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1.
BMC Bioinformatics ; 22(1): 212, 2021 Apr 23.
Artigo em Inglês | MEDLINE | ID: mdl-33892629

RESUMO

BACKGROUND: Mutation-induced variations in the functional architecture of the NaV1.7 channel protein are causally related to a broad spectrum of human pain disorders. Predicting in silico the phenotype of NaV1.7 variant is of major clinical importance; it can aid in reducing costs of in vitro pathophysiological characterization of NaV1.7 variants, as well as, in the design of drug agents for counteracting pain-disease symptoms. RESULTS: In this work, we utilize spatial complexity of hydropathic effects toward predicting which NaV1.7 variants cause pain (and which are neutral) based on the location of corresponding mutation sites within the NaV1.7 structure. For that, we analyze topological and scaling hydropathic characteristics of the atomic environment around NaV1.7's pore and probe their spatial correlation with mutation sites. We show that pain-related mutation sites occupy structural locations in proximity to a hydrophobic patch lining the pore while clustering at a critical hydropathic-interactions distance from the selectivity filter (SF). Taken together, these observations can differentiate pain-related NaV1.7 variants from neutral ones, i.e., NaV1.7 variants not causing pain disease, with 80.5[Formula: see text] sensitivity and 93.7[Formula: see text] specificity [area under the receiver operating characteristics curve = 0.872]. CONCLUSIONS: Our findings suggest that maintaining hydrophobic NaV1.7 interior intact, as well as, a finely-tuned (dictated by hydropathic interactions) distance from the SF might be necessary molecular conditions for physiological NaV1.7 functioning. The main advantage for using the presented predictive scheme is its negligible computational cost, as well as, hydropathicity-based biophysical rationalization.


Assuntos
Dor , Humanos , Mutação , Fenótipo
2.
J Biol Phys ; 47(1): 61-77, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33735400

RESUMO

Voltage-gated sodium channels (NavChs) are pore-forming membrane proteins that regulate the transport of sodium ions through the cell membrane. Understanding the structure and function of NavChs is of major biophysical, as well as clinical, importance given their key role in cellular pathophysiology. In this work, we provide a computational framework for modeling system-size-dependent, i.e., cumulative, atomic properties around a NavCh's pore. We illustrate our methodologies on the bacterial NavAb channel captured in a closed-pore state where we demonstrate that the atomic environment around its pore exhibits a bi-phasic spatial organization dictated by the structural separation of the pore domains (PDs) from the voltage-sensing domains (VSDs). Accordingly, a mathematical model describing packing of atoms around NavAb's pore is constructed that allows-under certain conservation conditions-for a power-law approximation of the cumulative hydropathic dipole field effect acting along NavAb's pore. This verified the non-extensitivity hypothesis for the closed-pore NavAb channel and revealed a long-range hydropathic interactions law regulating atom-packing around the NavAb's selectivity filter. Our model predicts a PDs-VSDs coupling energy of [Formula: see text] kcal/mol corresponding to a global maximum of the atom-packing energy profile. Crucially, we demonstrate for the first time how critical phenomena can emerge in a single-channel structure as a consequence of the non-extensive character of its atomic porous environment.


Assuntos
Sódio , Canais de Sódio Disparados por Voltagem , Membrana Celular/metabolismo , Íons , Sódio/metabolismo
3.
Proteins ; 88(10): 1319-1328, 2020 10.
Artigo em Inglês | MEDLINE | ID: mdl-32447794

RESUMO

Voltage-gated sodium channels (NavChs) are biological pores that control the flow of sodium ions through the cell membrane. In humans, mutations in genes encoding NavChs can disrupt physiological cellular activity thus leading to a wide spectrum of diseases. Here, we present a topological connection between the functional architecture of a NavAb bacterial channel and accumulation of atomic hydropathicity around its pore. This connection is established via a scaling analysis methodology that elucidates how intrachannel hydropathic density variations translate into hydropathic dipole field configurations along the pore. Our findings suggest the existence of a nonrandom cumulative hydropathic topology that is organized parallel to the membrane surface so that pore's stability, as well as, gating behavior are guaranteed. Given the biophysical significance of the hydropathic effect, our study seeks to provide a computational framework for studying cumulative hydropathic topological properties of NavChs and pore-forming proteins in general.


Assuntos
Arcobacter/química , Proteínas de Bactérias/química , Ativação do Canal Iônico/fisiologia , Sódio/química , Canais de Sódio Disparados por Voltagem/química , Sequência de Aminoácidos , Arcobacter/metabolismo , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Interações Hidrofóbicas e Hidrofílicas , Modelos Moleculares , Ligação Proteica , Conformação Proteica em alfa-Hélice , Conformação Proteica em Folha beta , Domínios e Motivos de Interação entre Proteínas , Sódio/metabolismo , Termodinâmica , Canais de Sódio Disparados por Voltagem/metabolismo
4.
Pharmacogenet Genomics ; 27(2): 51-56, 2017 02.
Artigo em Inglês | MEDLINE | ID: mdl-27922550

RESUMO

OBJECTIVE: We investigated the association of single nucleotide polymorphisms (SNPs) in drug-metabolizing enzymes and transporters (DMETs) with the response to azathioprine (AZA) in patients affected by myasthenia gravis (MG) to determine possible genotype-phenotype correlations. PATIENTS AND METHODS: Genomic DNA from 180 AZA-treated MG patients was screened through the Affymetrix DMET platform, which characterizes 1931 SNPs in 225 genes. The significant SNPs, identified to be involved in AZA response, were subsequently validated by allelic discrimination and direct sequencing. SNP analysis was carried out using the SNPassoc R package and the haploblocks were determined using haploview software. RESULTS: We studied 127 patients in the discovery phase and 53 patients in the validation phase. We showed that two SNPs (rs8058694 and rs8058696) found in ATP-binding cassette subfamily C member 6, a subfamily member of ATP-binding cassette genes, constituted a new haplotype associated with AZA response in MG patients in the discovery cohort (P=0.011; odds ratio: 0.40; 95% confidence interval: 0.20-0.83) and in the combined cohort (P=0.04; odds ratio: 1.58). CONCLUSION: These findings highlight the role that the ATP-binding cassette subfamily C member 6 haplotype may play in AZA drug response. In view of the significant effects and AZA intolerance, these novel SNPs should be taken into consideration in pharmacogenetic profiling for AZA.


Assuntos
Azatioprina/administração & dosagem , Estudos de Associação Genética/métodos , Proteínas Associadas à Resistência a Múltiplos Medicamentos/genética , Miastenia Gravis/tratamento farmacológico , Polimorfismo de Nucleotídeo Único , Adulto , Idoso , Azatioprina/farmacocinética , Feminino , Haplótipos , Humanos , Masculino , Pessoa de Meia-Idade , Miastenia Gravis/genética , Variantes Farmacogenômicos , Análise de Sequência de DNA
6.
Clin Immunol ; 173: 133-146, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27720845

RESUMO

Multiple Sclerosis (MS) is an inflammatory disease with neurodegenerative alterations, ultimately progressing to neurological handicap. Therapies are effective in counteracting inflammation but not neurodegeneration. Biomarkers predicting disease course or treatment response are lacking. We investigated whether altered gene and protein expression profiles were detectable in the peripheral blood of 78 relapsing remitting MS (RR-MS) patients treated by disease-modifying therapies. A discovery/validation study on RR-MS responsive to glatiramer acetate identified 8 differentially expressed genes: ITGA2B, ITGB3, CD177, IGJ, IL5RA, MMP8, P2RY12, and S100ß. A longitudinal study on glatiramer acetate, Interferon-ß, or Fingolimod treated RR-MS patients confirmed that 7 out of 8 genes were downregulated with reference to the different therapies, whereas S100ß was always upregulated. Thus, we identified a peripheral gene signature associated with positive response in RR-MS which may also explain drug immunomodulatory effects. The usefulness of this signature as a biomarker needs confirmation on larger series of patients.


Assuntos
Fatores Imunológicos/uso terapêutico , Esclerose Múltipla Recidivante-Remitente/tratamento farmacológico , Esclerose Múltipla Recidivante-Remitente/genética , Transcriptoma/efeitos dos fármacos , Adulto , Feminino , Cloridrato de Fingolimode/uso terapêutico , Perfilação da Expressão Gênica , Acetato de Glatiramer/uso terapêutico , Humanos , Interferon beta/uso terapêutico , Leucócitos Mononucleares/metabolismo , Masculino , Esclerose Múltipla Recidivante-Remitente/sangue , Adulto Jovem
7.
Proc Natl Acad Sci U S A ; 109(47): 19444-9, 2012 Nov 20.
Artigo em Inglês | MEDLINE | ID: mdl-23115331

RESUMO

Painful peripheral neuropathy often occurs without apparent underlying cause. Gain-of-function variants of sodium channel Na(v)1.7 have recently been found in ∼30% of cases of idiopathic painful small-fiber neuropathy. Here, we describe mutations in Na(v)1.8, another sodium channel that is specifically expressed in dorsal root ganglion (DRG) neurons and peripheral nerve axons, in patients with painful neuropathy. Seven Na(v)1.8 mutations were identified in 9 subjects within a series of 104 patients with painful predominantly small-fiber neuropathy. Three mutations met criteria for potential pathogenicity based on predictive algorithms and were assessed by voltage and current clamp. Functional profiling showed that two of these three Na(v)1.8 mutations enhance the channel's response to depolarization and produce hyperexcitability in DRG neurons. These observations suggest that mutations of Na(v)1.8 contribute to painful peripheral neuropathy.


Assuntos
Mutação/genética , Canal de Sódio Disparado por Voltagem NAV1.8/genética , Neuralgia/genética , Adulto , Idoso , Substituição de Aminoácidos/genética , Animais , Análise Mutacional de DNA , Fenômenos Eletrofisiológicos , Gânglios Espinais/metabolismo , Gânglios Espinais/patologia , Humanos , Masculino , Camundongos , Fibras Nervosas/metabolismo , Fibras Nervosas/patologia , Neuralgia/fisiopatologia
8.
Hum Brain Mapp ; 35(9): 4267-81, 2014 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-24706574

RESUMO

Presurgical monitoring with intracerebral electrodes in patients with drug-resistant focal epilepsy represents a standard invasive procedure to localize the sites of seizures origin, defined as the epileptogenic zone (EZ). During presurgical evaluation, intracerebral single-pulse electrical stimulation (SPES) is performed to define the boundaries of eloquent areas and to evoke seizure-associated symptoms. Extensive intracranial exploration and stimulation generate a large dataset on brain connectivity that can be used to improve EZ detection and to understand the organization of the human epileptic brain. We developed a protocol to analyse field responses evoked by intracranial stimulation. Intracerebral recordings were performed with 105-162 recording sites positioned in fronto-temporal regions in 12 patients with pharmacoresistant focal epilepsy. Recording sites were used for bipolar SPES at 1 Hz. Reproducible early and late phases (<60 ms and 60-500 ms from stimulus artefact, respectively) were identified on averaged evoked responses. Phase 1 and 2 responses recorded at all and each recording sites were plotted on a 3D brain reconstructions. Based on connectivity properties, electrode contacts were primarily identified as receivers, mainly activators or bidirectional. We used connectivity patterns to construct networks and applied cluster partitioning to study the proprieties between potentials evoked/stimulated in different regions. We demonstrate that bidirectional connectivity during phase 1 is a prevalent feature that characterize contacts included in the EZ. This study shows that the application of an analytical protocol on intracerebral stimulus-evoked recordings provides useful information that may contribute to EZ detection and to the management of surgical-remediable epilepsies.


Assuntos
Mapeamento Encefálico/métodos , Eletroencefalografia/métodos , Epilepsias Parciais/fisiopatologia , Epilepsias Parciais/cirurgia , Potenciais Evocados , Cuidados Pré-Operatórios/métodos , Adolescente , Adulto , Estimulação Elétrica/métodos , Epilepsias Parciais/patologia , Estudos de Viabilidade , Feminino , Seguimentos , Lobo Frontal/patologia , Lobo Frontal/fisiopatologia , Humanos , Neuroestimuladores Implantáveis , Imageamento por Ressonância Magnética , Masculino , Modelos Neurológicos , Vias Neurais/fisiopatologia , Processamento de Sinais Assistido por Computador , Lobo Temporal/patologia , Lobo Temporal/fisiopatologia , Tomografia Computadorizada por Raios X , Adulto Jovem
9.
J Hum Genet ; 58(9): 581-7, 2013 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-23739125

RESUMO

Myotonia congenita is a genetic disease characterized by impaired muscle relaxation after forceful contraction (myotonia) and caused by mutations in the chloride channel voltage-sensitive 1 (CLCN1) gene, encoding the voltage-gated chloride channel of skeletal muscle (ClC-1). In a large cohort of clinically diagnosed unrelated probands, we identified 75 different CLCN1 mutations in 106 individuals, among which 29 were novel mutations and 46 had already been reported. Despite the newly described mutations being scattered throughout the gene, in our patients, mutations were mostly found in exons 4 and 5. Most of the novel mutations located in the region comprising the intramembrane helices are involved in the ion-conducting pathway and predicted to affect channel function. We report for the first time that two mutations, inherited on the same allele as a heterozygous trait, abrogate disease expression, although when inherited singularly they were pathogenic. Such a mode of inheritance might explain the incomplete penetrance reported for autosomal dominant mutations in particular families.


Assuntos
Canais de Cloreto/genética , Miotonia Congênita/genética , Adolescente , Adulto , Idoso , Criança , Pré-Escolar , Canais de Cloreto/química , Estudos de Coortes , Análise Mutacional de DNA , Éxons , Feminino , Humanos , Itália/epidemiologia , Masculino , Pessoa de Meia-Idade , Mutação , Miotonia Congênita/epidemiologia , Adulto Jovem
10.
J Plant Res ; 124(5): 619-29, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21240536

RESUMO

In nature, plants can recognize potential pathogens, thus activating intricate networks of defense signals and reactions. Inducible defense is often mediated by the detection of microbe or pathogen associated molecular pattern elicitors, such as flagellin and chitin. Chitosan, the deacetylated form of chitin, plays a role in inducing protection against pathogens in many plant species. We evaluated the ability of chitosan to confer resistance to Botrytis cinerea in Arabidopsis leaves. We subsequently treated Arabidopsis seedlings with chitosan and carried out a transcript profiling analysis using both ATH1 GeneChip microarrays and quantitative RT-PCR. The results showed that defense response genes, including camalexin biosynthesis genes, were up-regulated by chitosan, both in wild-type and in the chitin-insensitive cerk1 mutant, indicating that chitosan is perceived through a CERK1-independent pathway.


Assuntos
Proteínas de Arabidopsis/genética , Arabidopsis/efeitos dos fármacos , Arabidopsis/genética , Quitosana/farmacologia , Regulação da Expressão Gênica de Plantas/efeitos dos fármacos , Imunidade Vegetal/efeitos dos fármacos , Proteínas Serina-Treonina Quinases/genética , Arabidopsis/imunologia , Arabidopsis/metabolismo , Botrytis/fisiologia , Quitina/farmacologia , Perfilação da Expressão Gênica , Indóis/metabolismo , Mutação , Análise de Sequência com Séries de Oligonucleotídeos , Folhas de Planta/efeitos dos fármacos , Folhas de Planta/genética , Folhas de Planta/imunologia , Folhas de Planta/metabolismo , Plântula/efeitos dos fármacos , Plântula/genética , Plântula/imunologia , Plântula/metabolismo , Tiazóis/metabolismo
11.
Antimicrob Agents Chemother ; 54(5): 2167-74, 2010 May.
Artigo em Inglês | MEDLINE | ID: mdl-20145076

RESUMO

Class D beta-lactamases represent a heterogeneous group of active-site serine beta-lactamases that show an extraordinary panel of functional features and substrate profiles, thus representing relevant models for biochemical and structural studies. OXA-46 is a narrow-spectrum enzyme belonging to the OXA-2 subgroup which was found in a Pseudomonas aeruginosa clinical isolate from northern Italy. In this work, we obtained the three-dimensional structure of OXA-46, which shows the overall fold of active serine beta-lactamases and a dimeric quaternary structure. Significant differences with currently available structures of class D beta-lactamases were found in the loops located close to the active site, which differ in length and conformation. Interestingly, the three subunits present in the asymmetric unit showed some structural heterogeneity, only one of which presented a carbamylated lysine recognized as an important functional feature of class D enzymes. The carbamylation state of residue Lys75 appeared to be associated with different shapes and dimensions of the active site. Moreover, a tartrate molecule from the crystallization buffer was found in the active site of the noncarbamylated subunits, which interacts with catalytically relevant residues. The OXA-46 crystal asymmetric units thus interestingly present the structures of the free carbamylated active site and of the ligand-bound uncarbamylated active site, offering the structural basis for investigating the potential of new scaffolds of beta-lactamase inhibitors.


Assuntos
Ácidos Carboxílicos/farmacologia , Oxalatos/farmacologia , Pseudomonas aeruginosa/genética , beta-Lactamases/química , beta-Lactamases/genética , Sequência de Aminoácidos , Ânions/química , Ácidos Carboxílicos/química , Domínio Catalítico , Sequência Conservada , Cristalografia por Raios X , Lisina/química , Dados de Sequência Molecular , Oxalatos/química , Estrutura Quaternária de Proteína , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Pseudomonas aeruginosa/efeitos dos fármacos , Relação Estrutura-Atividade , Tartaratos/química , Resistência beta-Lactâmica
12.
Toxicol In Vitro ; 50: 124-136, 2018 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-29522793

RESUMO

Botulin toxin (BTX) is widely used for treating skeletal muscle spasticity. Experimental reports on BTX treatment were mainly focused on the neuromuscular junction, while relatively little is known about toxin effects on the muscle cell itself. We investigated possible impact of BTX type A on skeletal muscle cell transcriptome by microarray analysis in muscle-derived cell cultures (fibroblasts, myoblasts and myotubes) from controls and spastic patients, and results were then validated at transcript and protein level. BTX-A treatment of control cells induced major changes in the myogenic component of the transcriptome, whereas the same treatment had a negligible effect in the fibrogenic component. BTX-A treatment of cell cultures from spastic patients induced an increased number of genes differentially expressed both in the fibrogenic and myogenic components. Specifically, BTX-A had a major effect on cell cycle-related genes in myoblasts, on muscle contraction-related genes in myotubes, and on extracellular matrix-related genes in fibroblasts from spastic patients. Our findings show that in vitro BTX-A treatment differentially affects transcript expression in muscle cells from spastic patients compared to those from controls suggesting a direct effect of BTX-A on muscle-specific functional pathways.


Assuntos
Toxinas Botulínicas Tipo A/toxicidade , Fibras Musculares Esqueléticas/efeitos dos fármacos , Espasticidade Muscular/genética , Fármacos Neuromusculares/toxicidade , Músculo Quadríceps/efeitos dos fármacos , Transcriptoma/efeitos dos fármacos , Adolescente , Adulto , Biópsia , Sobrevivência Celular/efeitos dos fármacos , Células Cultivadas , Fibroblastos/efeitos dos fármacos , Fibroblastos/metabolismo , Humanos , Pessoa de Meia-Idade , Fibras Musculares Esqueléticas/metabolismo , Espasticidade Muscular/metabolismo , Espasticidade Muscular/patologia , Mioblastos Esqueléticos/efeitos dos fármacos , Mioblastos Esqueléticos/metabolismo , Músculo Quadríceps/metabolismo , Músculo Quadríceps/patologia , Adulto Jovem
13.
BMC Syst Biol ; 11(1): 28, 2017 02 24.
Artigo em Inglês | MEDLINE | ID: mdl-28235406

RESUMO

BACKGROUND: Gain-of-function mutations in SCN9A gene that encodes the voltage-gated sodium channel NaV1.7 have been associated with a wide spectrum of painful syndromes in humans including inherited erythromelalgia, paroxysmal extreme pain disorder and small fibre neuropathy. These mutations change the biophysical properties of NaV1.7 channels leading to hyperexcitability of dorsal root ganglion nociceptors and pain symptoms. There is a need for better understanding of how gain-of-function mutations alter the atomic structure of Nav1.7. RESULTS: We used homology modeling to build an atomic model of NaV1.7 and a network-based theoretical approach, which can predict interatomic interactions and connectivity arrangements, to investigate how pain-related NaV1.7 mutations may alter specific interatomic bonds and cause connectivity rearrangement, compared to benign variants and polymorphisms. For each amino acid substitution, we calculated the topological parameters betweenness centrality (B ct ), degree (D), clustering coefficient (CC ct ), closeness (C ct ), and eccentricity (E ct ), and calculated their variation (Δ value = mutant value -WT value ). Pathogenic NaV1.7 mutations showed significantly higher variation of |ΔB ct | compared to benign variants and polymorphisms. Using the cut-off value ±0.26 calculated by receiver operating curve analysis, we found that ΔB ct correctly differentiated pathogenic NaV1.7 mutations from variants not causing biophysical abnormalities (nABN) and homologous SNPs (hSNPs) with 76% sensitivity and 83% specificity. CONCLUSIONS: Our in-silico analyses predict that pain-related pathogenic NaV1.7 mutations may affect the network topological properties of the protein and suggest |ΔB ct | value as a potential in-silico marker.


Assuntos
Biologia Computacional/métodos , Mutação , Canal de Sódio Disparado por Voltagem NAV1.7/genética , Canal de Sódio Disparado por Voltagem NAV1.7/metabolismo , Dor/genética , Dor/metabolismo , Mapeamento de Interação de Proteínas , Humanos , Modelos Moleculares , Mutagênese , Canal de Sódio Disparado por Voltagem NAV1.7/química , Polimorfismo de Nucleotídeo Único , Conformação Proteica
14.
Oncoimmunology ; 5(5): e1108513, 2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-27467914

RESUMO

Abcc3, a member of the ATP-binding cassette transporter superfamily, plays a role in multidrug resistance. Here, we found that Abcc3 is highly expressed in blood-derived NK cells but not in CD8(+) T cells. In GL261 glioma-bearing mice treated with the alkylating agent temozolomide (TMZ) for 5 d, an early increased frequency of NK cells was observed. We also found that Abcc3 is strongly upregulated and functionally active in NK cells from mice treated with TMZ compared to controls. We demonstrate that Abcc3 is critical for NK cell survival during TMZ administration; more importantly, Akt, involved in lymphocyte survival, is phosphorylated only in NK cells expressing Abcc3. The resistance of NK cells to chemotherapy was accompanied by increased migration and homing in the brain at early time points. Cytotoxicity, evaluated by IFNγ production and specific lytic activity against GL261 cells, increased peripherally in the later phases, after conclusion of TMZ treatment. Intra-tumor increase of the NK effector subset as well as in IFNγ, granzymes and perforin-1 expression, were found early and persisted over time, correlating with a profound modulation on glioma microenvironment induced by TMZ. Our findings reveal an important involvement of Abcc3 in NK cell resistance to chemotherapy and have important clinical implications for patients treated with chemo-immunotherapy.

15.
Immunobiology ; 221(4): 516-27, 2016 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-26723518

RESUMO

Considerable data implicate the thymus as the main site of autosensitization to the acetylcholine receptor in myasthenia gravis (MG), a B-cell-mediated autoimmune disease affecting the neuromuscular junction. We recently demonstrated an active Epstein-Barr virus (EBV) infection in the thymus of MG patients, suggesting that EBV might contribute to the onset or maintenance of the autoimmune response within MG thymus, because of its ability to activate and immortalize autoreactive B cells. EBV has been reported to elicit and modulate Toll-like receptor (TLR) 7- and TLR9-mediated innate immune responses, which are known to favor B-cell dysfunction and autoimmunity. Aim of this study was to investigate whether EBV infection is associated with altered expression of TLR7 and TLR9 in MG thymus. By real-time PCR, we found that TLR7 and TLR9 mRNA levels were significantly higher in EBV-positive MG compared to EBV-negative normal thymuses. By confocal microscopy, high expression levels of TLR7 and TLR9 proteins were observed in B cells and plasma cells of MG thymic germinal centers (GCs) and lymphoid infiltrates, where the two receptors co-localized with EBV antigens. An increased frequency of Ki67-positive proliferating B cells was found in MG thymuses, where we also detected proliferating cells expressing TLR7, TLR9 and EBV antigens, thus supporting the idea that EBV-associated TLR7/9 signaling may promote abnormal B-cell activation and proliferation. Along with B cells and plasma cells, thymic epithelium, plasmacytoid dendritic cells and macrophages exhibited enhanced TLR7 and TLR9 expression in MG thymus; TLR7 was also increased in thymic myeloid dendritic cells and its transcriptional levels positively correlated with those of interferon (IFN)-ß. We suggested that TLR7/9 signaling may be involved in antiviral type I IFN production and long-term inflammation in EBV-infected MG thymuses. Our overall findings indicate that EBV-driven TLR7- and TLR9-mediated innate immune responses may participate in the intra-thymic pathogenesis of MG.


Assuntos
Antígenos Virais/imunologia , Infecções por Vírus Epstein-Barr/imunologia , Miastenia Gravis/imunologia , Timo/imunologia , Receptor 7 Toll-Like/imunologia , Receptor Toll-Like 9/imunologia , Adolescente , Adulto , Antígenos Virais/genética , Linfócitos B/imunologia , Linfócitos B/patologia , Linfócitos B/virologia , Proliferação de Células , Células Dendríticas/imunologia , Células Dendríticas/patologia , Células Dendríticas/virologia , Infecções por Vírus Epstein-Barr/complicações , Infecções por Vírus Epstein-Barr/patologia , Infecções por Vírus Epstein-Barr/virologia , Feminino , Regulação da Expressão Gênica , Centro Germinativo/imunologia , Centro Germinativo/patologia , Centro Germinativo/virologia , Herpesvirus Humano 4 , Humanos , Interferon beta/genética , Interferon beta/imunologia , Antígeno Ki-67/genética , Antígeno Ki-67/imunologia , Ativação Linfocitária , Macrófagos/imunologia , Macrófagos/patologia , Macrófagos/virologia , Masculino , Miastenia Gravis/complicações , Miastenia Gravis/patologia , Miastenia Gravis/virologia , RNA Mensageiro/genética , RNA Mensageiro/imunologia , Transdução de Sinais , Timo/patologia , Timo/virologia , Receptor 7 Toll-Like/genética , Receptor Toll-Like 9/genética
16.
Neurobiol Aging ; 38: 215.e1-215.e12, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26652843

RESUMO

GRN, the gene coding for the progranulin (PGRN) protein, was recognized as a gene linked to frontotemporal lobar degeneration (FTLD). The first mutations identified were null mutations giving rise to haploinsufficiency. Missense mutations were subsequently detected, but only a small subset has been functionally investigated. We identified missense mutations (C105Y, A199V, and R298H) in FTLD cases with family history and/or with low plasma PGRN levels. The aim of this study was to determine their pathogenicity. We performed functional studies, analyzing PGRN expression, secretion, and cleavage by elastase. GRN C105Y affected both secretion and elastase cleavage, likely representing a pathogenic mutation. GRN A199V did not alter the physiological properties of PGRN and GRN R298H produced only moderate effects on PGRN secretion, indicating that their pathogenicity is uncertain. In the absence of strong segregation data and neuropathological examinations, genetic, biomarker, and functional studies can be applied to an algorithm to assess the likelihood of pathogenicity for a mutation. This information can improve our understanding of the complex mechanisms by which GRN mutations lead to FTLD.


Assuntos
Degeneração Lobar Frontotemporal/genética , Estudos de Associação Genética , Peptídeos e Proteínas de Sinalização Intercelular/genética , Mutação de Sentido Incorreto/genética , Adulto , Idoso , Idoso de 80 Anos ou mais , Celobiose/análogos & derivados , Estudos de Coortes , Feminino , Degeneração Lobar Frontotemporal/patologia , Dosagem de Genes , Células HEK293 , Humanos , Peptídeos e Proteínas de Sinalização Intercelular/análise , Pessoa de Meia-Idade , Progranulinas
17.
Mol Brain ; 8: 5, 2015 Jan 28.
Artigo em Inglês | MEDLINE | ID: mdl-25626686

RESUMO

BACKGROUND: Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease characterized by selective motor neuron degeneration in motor cortex, brainstem and spinal cord. microRNAs (miRNAs) are small non-coding RNAs that bind complementary target sequences and modulate gene expression; they are key molecules for establishing a neuronal phenotype, and in neurodegeneration. Here we investigated neural miR-9, miR-124a, miR-125b, miR-219, miR-134, and cell cycle-related miR-19a and -19b, in G93A-SOD1 mouse brain in pre-symptomatic and late stage disease. RESULTS: Expression of miR-9, miR-124a, miR-19a and -19b was significantly increased in G93A-SOD1 whole brain at late stage disease compared to B6.SJL and Wt-SOD1 control brains. These miRNAs were then analyzed in manually dissected SVZ, hippocampus, primary motor cortex and brainstem motor nuclei in 18-week-old ALS mice compared to same age controls. In SVZ and hippocampus miR-124a was up-regulated, miR-219 was down-regulated, and numbers of neural stem progenitor cells (NSPCs) were significantly increased. In G93A-SOD1 brainstem motor nuclei and primary motor cortex, miR-9 and miR-124a were significantly up-regulated, miR-125b expression was also increased. miR-19a and -19b were up-regulated in primary motor cortex and hippocampus, respectively. Expression analysis of predicted miRNA targets identified miRNA/target gene pairs differentially expressed in G93A-SOD1 brain regions compared to controls. CONCLUSIONS: Hierarchical clustering analysis, identifying two clusters of miRNA/target genes, one characterizing brainstem motor nuclei and primary motor cortex, the other hippocampus and SVZ, suggests that altered expression of neural and cell cycle-related miRNAs in these brain regions might contribute to ALS pathogenesis in G93A-SOD1 mice. Re-establishing their expression to normal levels could be a new therapeutic approach to ALS.


Assuntos
Esclerose Lateral Amiotrófica/genética , Esclerose Lateral Amiotrófica/patologia , Encéfalo/metabolismo , Ciclo Celular , MicroRNAs/genética , Neurônios/metabolismo , Regulação para Cima/genética , Animais , Contagem de Células , Diferenciação Celular , Progressão da Doença , Hipocampo/patologia , Camundongos , Camundongos Transgênicos , MicroRNAs/metabolismo , Células-Tronco Neurais/metabolismo , Neuroglia/metabolismo , Neurônios/patologia , Especificidade de Órgãos/genética , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Superóxido Dismutase/genética
18.
PLoS One ; 9(11): e111490, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-25365350

RESUMO

Autophagy has a large range of physiological functions and its dysregulation contributes to several human disorders, including autoinflammatory/autoimmune diseases such as inflammatory myopathies (IIMs). In order to better understand the pathogenetic mechanisms of these muscular disorders, we sought to define the role of autophagic processes and their relation with the innate immune system in the three main subtypes of IIM, specifically sporadic inclusion body myositis (sIBM), polymyositis (PM), dermatomyositis (DM) and juvenile dermatomyositis (JDM). We found that although the mRNA transcript levels of the autophagy-related genes BECN1, ATG5 and FBXO32 were similar in IIM and controls, autophagy activation in all IIM subgroups was suggested by immunoblotting results and confirmed by immunofluorescence. TLR4 and TLR3, two potent inducers of autophagy, were highly increased in IIM, with TLR4 transcripts significantly more expressed in PM and DM than in JDM, sIBM and controls, and TLR3 transcripts highly up-regulated in all IIM subgroups compared to controls. Co-localization between autophagic marker, LC3, and TLR4 and TLR3 was observed not only in sIBM but also in PM, DM and JDM muscle tissues. Furthermore, a highly association with the autophagic processes was observed in all IIM subgroups also for some TLR4 ligands, endogenous and bacterial HSP60, other than the high-mobility group box 1 (HMGB1). These findings indicate that autophagic processes are active not only in sIBM but also in PM, DM and JDM, probably in response to an exogenous or endogenous 'danger signal'. However, autophagic activation and regulation, and also interaction with the innate immune system, differ in each type of IIM. Better understanding of these differences may lead to new therapies for the different IIM types.


Assuntos
Autofagia , Imunidade Inata , Miosite/etiologia , Autofagia/genética , Autofagia/imunologia , Biomarcadores , Chaperonina 60/genética , Chaperonina 60/metabolismo , Antígenos HLA-DR/imunologia , Antígenos HLA-DR/metabolismo , Proteínas HMGB/genética , Proteínas HMGB/metabolismo , Humanos , Imunidade Inata/genética , Proteínas Associadas aos Microtúbulos/metabolismo , Miosite/diagnóstico , Miosite/patologia , Fagossomos/metabolismo , Ligação Proteica , Transporte Proteico , Regeneração/genética , Regeneração/imunologia , Receptores Toll-Like/genética , Receptores Toll-Like/metabolismo , Transcrição Gênica
19.
Exp Neurol ; 253: 91-101, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24365539

RESUMO

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disorder characterized by progressive motoneuron loss in the CNS. In G93A-SOD1 mice, motoneuron degeneration is associated with proliferative restorative attempts of ependymal stem progenitor cells (epSPCs), usually quiescent in the spinal cord. The aims of the study were to demonstrate that epSPCs isolated from the spinal cord of G93A-SOD1 mice express neurogenic potential in vitro, and thus gain a better understanding of epSPC neural differentiation properties. For this purpose, we compared the ability of epSPCs from asymptomatic and symptomatic G93A-SOD1 and WT SOD1 transgenic mice to proliferate and differentiate into neural cells. Compared to control cells, G93A-SOD1 epSPCs differentiated more into neurons than into astrocytes, whereas oligodendrocyte proportions were similar in the two populations. G93A-SOD1 neurons were small and astrocytes had an activated phenotype. Evaluation of microRNAs, specific for neural cell fate and cell-cycle regulation, in G93A-SOD1 epSPCs showed that miR-9, miR-124a, miR-19a and miR-19b were differentially expressed. Expression analysis of the predicted miRNA targets allowed identification of a functional network in which Hes1, Pten, Socs1, and Stat3 genes were important for controlling epSPC fate. Our findings demonstrate that G93A-SOD1 epSPCs are a source of multipotent cells that have neurogenic potential in vitro, and might be a useful tool to investigate the mechanisms of neural differentiation in relation to miRNA expression whose modulation might constitute new targeted therapeutic approaches to ALS.


Assuntos
Epêndima/citologia , MicroRNAs/metabolismo , Neurônios/metabolismo , Células-Tronco/fisiologia , Superóxido Dismutase/metabolismo , Fatores Etários , Animais , Diferenciação Celular/genética , Proliferação de Células , Regulação da Expressão Gênica/genética , Regulação da Expressão Gênica/imunologia , Redes Reguladoras de Genes/genética , Camundongos , Camundongos Endogâmicos C57BL , Camundongos Transgênicos , MicroRNAs/genética , Proteínas do Tecido Nervoso/metabolismo , Antígenos O/metabolismo , Fator 3 de Transcrição de Octâmero/metabolismo , Receptores de N-Metil-D-Aspartato/metabolismo , Fatores de Transcrição SOXB1/metabolismo , Medula Espinal/anatomia & histologia , Células-Tronco/metabolismo , Superóxido Dismutase/genética , Tubulina (Proteína)/metabolismo
20.
Neurology ; 83(18): 1634-44, 2014 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-25274841

RESUMO

OBJECTIVES: Our aim was to conduct a comparative study in a large cohort of myopathic patients carrying LMNA gene mutations to evaluate clinical and molecular features associated with different phenotypes. METHODS: We performed a retrospective cohort study of 78 myopathic patients with LMNA mutation and 30 familial cases with LMNA mutation without muscle involvement. We analyzed features characterizing the various forms of LMNA-related myopathy through correlation statistics. RESULTS: Of the 78 patients, 37 (47%) had limb-girdle muscular dystrophy 1B (LGMD1B), 18 (23%) congenital muscular dystrophy (MDCL), 17 (22%) autosomal dominant Emery-Dreifuss muscular dystrophy 2 (EDMD2), and 6 (8%) an atypical myopathy. The myopathic phenotypes shared a similar cardiac impairment. Cardioverter defibrillator or pacemaker was implanted in 41 (53%) myopathic patients compared to 7 (23%) familial cases without muscle involvement (p = 0.005). Heart transplantation was performed in 8 (10.3%) myopathic patients and in none of the familial cases. Ten (12.8%) myopathic patients died; there were no deaths among the familial cases (p = 0.032). Missense mutations were found in 14 patients (82%) with EDMD2 and 14 patients (78%) with MDCL compared to 17 patients (45%) with LGMD1B and 4 (67%) atypical patients. Frameshift mutations were detected in 17 (45%) LGMD1B compared to 3 (18%) EDMD2, 1 (6%) MDCL, and 2 (33%) with atypical myopathy (p = 0.021). Furthermore, frameshift mutations were found in 30 of 73 patients (41%) with heart involvement compared to 4 of 35 (11%) without heart involvement (p = 0.004). CONCLUSIONS: Our data provided new insights in LMNA-related myopathies, whose natural history appears to be dominated by cardiac involvement and related complications.


Assuntos
Cardiomiopatias , Lamina Tipo A/genética , Doenças Musculares , Distrofias Musculares , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Cardiomiopatias/etiologia , Cardiomiopatias/genética , Cardiomiopatias/fisiopatologia , Criança , Pré-Escolar , Estudos de Coortes , Feminino , Humanos , Itália , Masculino , Pessoa de Meia-Idade , Doenças Musculares/complicações , Doenças Musculares/genética , Doenças Musculares/fisiopatologia , Distrofias Musculares/complicações , Distrofias Musculares/genética , Distrofias Musculares/fisiopatologia , Distrofia Muscular do Cíngulo dos Membros/complicações , Distrofia Muscular do Cíngulo dos Membros/genética , Distrofia Muscular do Cíngulo dos Membros/fisiopatologia , Distrofia Muscular de Emery-Dreifuss/complicações , Distrofia Muscular de Emery-Dreifuss/genética , Distrofia Muscular de Emery-Dreifuss/fisiopatologia , Mutação de Sentido Incorreto , Linhagem , Fenótipo , Adulto Jovem
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