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1.
Immunity ; 45(3): 597-609, 2016 09 20.
Artigo em Inglês | MEDLINE | ID: mdl-27590115

RESUMO

Hematopoietic stem cells (HSCs) sustain long-term reconstitution of hematopoiesis in transplantation recipients, yet their role in the endogenous steady-state hematopoiesis remains unclear. In particular, recent studies suggested that HSCs provide a relatively minor contribution to immune cell development in adults. We directed transgene expression in a fraction of HSCs that maintained reconstituting activity during serial transplantations. Inducible genetic labeling showed that transgene-expressing HSCs gave rise to other phenotypic HSCs, confirming their top position in the differentiation hierarchy. The labeled HSCs rapidly contributed to committed progenitors of all lineages and to mature myeloid cells and lymphocytes, but not to B-1a cells or tissue macrophages. Importantly, labeled HSCs gave rise to more than two-thirds of all myeloid cells and platelets in adult mice, and this contribution could be accelerated by an induced interferon response. Thus, classically defined HSCs maintain immune cell development in the steady state and during systemic cytokine responses.


Assuntos
Linhagem da Célula/fisiologia , Hematopoese/fisiologia , Células-Tronco Hematopoéticas/fisiologia , Animais , Linfócitos B/metabolismo , Linfócitos B/fisiologia , Plaquetas/metabolismo , Plaquetas/fisiologia , Diferenciação Celular/fisiologia , Transplante de Células-Tronco Hematopoéticas/métodos , Células-Tronco Hematopoéticas/metabolismo , Interferons/metabolismo , Macrófagos/metabolismo , Macrófagos/fisiologia , Camundongos , Camundongos Endogâmicos C57BL , Células Mieloides/metabolismo , Células Mieloides/fisiologia
2.
Ecol Appl ; 33(5): e2889, 2023 07.
Artigo em Inglês | MEDLINE | ID: mdl-37212375

RESUMO

Translocation, often a management solution reserved for at-risk species, is a highly time-sensitive intervention in the face of a rapidly changing climate. The definition of abiotic and biotic habitat requirements is essential to the selection of appropriate release sites in novel environments. However, field-based approaches to gathering this information are often too time intensive, especially in areas of complex topography where common, coarse-scale climate models lack essential details. We apply a fine-scale remote sensing-based approach to study the 'akikiki (Oreomystis bairdi) and 'akeke'e (Loxops caeruleirostris), Hawaiian honeycreepers endemic to Kaua'i that are experiencing large-scale population declines due to warming-induced spread of invasive disease. We use habitat suitability modeling based on fine-scale light detection and ranging (lidar)-derived habitat structure metrics to refine coarse climate ranges for these species in candidate translocation areas on Maui. We found that canopy density was consistently the most important variable in defining habitat suitability for the two Kaua'i species. Our models also corroborated known habitat preferences and behavioral information for these species that are essential for informing translocation. We estimated a nesting habitat that will persist under future climate conditions on east Maui of 23.43 km2 for 'akikiki, compared to the current Kaua'i range of 13.09 km2 . In contrast, the novel nesting range for 'akeke'e in east Maui was smaller than its current range on Kaua'i (26.29 vs. 38.48 km2 , respectively). We were also able to assess detailed novel competitive interactions at a fine scale using models of three endemic Maui species of conservation concern: 'akohekohe (Palmeria dolei), Maui 'alauahio (Paroreomyza montana), and kiwikiu (Pseudonestor xanthophrys). Weighted overlap areas between the species from both islands were moderate (<12 km2 ), and correlations between Maui and Kaua'i bird habitat were generally low, indicating limited potential for competition. Results indicate that translocation to east Maui could be a viable option for 'akikiki but would be more uncertain for 'akeke'e. Our novel multifaceted approach allows for the timely analysis of both climate and vegetation structure at informative scales for the effective selection of appropriate translocation sites for at-risk species.


Assuntos
Espécies em Perigo de Extinção , Passeriformes , Animais , Havaí/epidemiologia , Ilhas , Ecossistema
3.
Proc Natl Acad Sci U S A ; 117(52): 33711-33718, 2020 12 29.
Artigo em Inglês | MEDLINE | ID: mdl-33318215

RESUMO

Coral is the life-form that underpins the habitat of most tropical reef ecosystems, thereby supporting biological diversity throughout the marine realm. Coral reefs are undergoing rapid change from ocean warming and nearshore human activities, compromising a myriad of services provided to societies including coastal protection, fishing, and cultural practices. In the face of these challenges, large-scale operational mapping of live coral cover within and across reef ecosystems could provide more opportunities to address reef protection, resilience, and restoration at broad management- and policy-relevant scales. We developed an airborne mapping approach combining laser-guided imaging spectroscopy and deep learning models to quantify, at a large archipelago scale, the geographic distribution of live corals to 16-m water depth throughout the main Hawaiian islands. Airborne estimates of live coral cover were highly correlated with field-based estimates of live coral cover (R2 = 0.94). Our maps were used to assess the relative condition of reefs based on live coral, and to identify potential coral refugia in the face of human-driven stressors, including marine heat waves. Geospatial modeling revealed that water depth, wave power, and nearshore development accounted for the majority (>60%) of live coral cover variation, but other human-driven factors were also important. Mapped interisland and intraisland variation in live coral location improves our understanding of reef geography and its human impacts, thereby guiding environmental management for reef resiliency.


Assuntos
Antozoários/fisiologia , Conservação dos Recursos Naturais , Recifes de Corais , Animais , Ilhas , Modelos Biológicos , Reprodutibilidade dos Testes
4.
Blood ; 135(25): 2235-2251, 2020 06 18.
Artigo em Inglês | MEDLINE | ID: mdl-32384151

RESUMO

Aging is associated with significant changes in the hematopoietic system, including increased inflammation, impaired hematopoietic stem cell (HSC) function, and increased incidence of myeloid malignancy. Inflammation of aging ("inflammaging") has been proposed as a driver of age-related changes in HSC function and myeloid malignancy, but mechanisms linking these phenomena remain poorly defined. We identified loss of miR-146a as driving aging-associated inflammation in AML patients. miR-146a expression declined in old wild-type mice, and loss of miR-146a promoted premature HSC aging and inflammation in young miR-146a-null mice, preceding development of aging-associated myeloid malignancy. Using single-cell assays of HSC quiescence, stemness, differentiation potential, and epigenetic state to probe HSC function and population structure, we found that loss of miR-146a depleted a subpopulation of primitive, quiescent HSCs. DNA methylation and transcriptome profiling implicated NF-κB, IL6, and TNF as potential drivers of HSC dysfunction, activating an inflammatory signaling relay promoting IL6 and TNF secretion from mature miR-146a-/- myeloid and lymphoid cells. Reducing inflammation by targeting Il6 or Tnf was sufficient to restore single-cell measures of miR-146a-/- HSC function and subpopulation structure and reduced the incidence of hematological malignancy in miR-146a-/- mice. miR-146a-/- HSCs exhibited enhanced sensitivity to IL6 stimulation, indicating that loss of miR-146a affects HSC function via both cell-extrinsic inflammatory signals and increased cell-intrinsic sensitivity to inflammation. Thus, loss of miR-146a regulates cell-extrinsic and -intrinsic mechanisms linking HSC inflammaging to the development of myeloid malignancy.


Assuntos
Envelhecimento/genética , Inflamação/genética , Interleucina-6/fisiologia , Leucemia Mieloide Aguda/etiologia , MicroRNAs/genética , Fator de Necrose Tumoral alfa/fisiologia , Adolescente , Adulto , Idoso , Envelhecimento/imunologia , Animais , Diferenciação Celular , Autorrenovação Celular , Senescência Celular , Citocinas/biossíntese , Metilação de DNA , Feminino , Células-Tronco Hematopoéticas/metabolismo , Células-Tronco Hematopoéticas/patologia , Humanos , Inflamação/fisiopatologia , Interleucina-6/antagonistas & inibidores , Masculino , Camundongos , Camundongos Knockout , MicroRNAs/biossíntese , Pessoa de Meia-Idade , NF-kappa B/fisiologia , Análise de Célula Única , Transcriptoma , Fator de Necrose Tumoral alfa/antagonistas & inibidores , Adulto Jovem
5.
Blood ; 136(5): 596-609, 2020 07 30.
Artigo em Inglês | MEDLINE | ID: mdl-32270193

RESUMO

Overcoming drug resistance and targeting cancer stem cells remain challenges for curative cancer treatment. To investigate the role of microRNAs (miRNAs) in regulating drug resistance and leukemic stem cell (LSC) fate, we performed global transcriptome profiling in treatment-naive chronic myeloid leukemia (CML) stem/progenitor cells and identified that miR-185 levels anticipate their response to ABL tyrosine kinase inhibitors (TKIs). miR-185 functions as a tumor suppressor: its restored expression impaired survival of drug-resistant cells, sensitized them to TKIs in vitro, and markedly eliminated long-term repopulating LSCs and infiltrating blast cells, conferring a survival advantage in preclinical xenotransplantation models. Integrative analysis with mRNA profiles uncovered PAK6 as a crucial target of miR-185, and pharmacological inhibition of PAK6 perturbed the RAS/MAPK pathway and mitochondrial activity, sensitizing therapy-resistant cells to TKIs. Thus, miR-185 presents as a potential predictive biomarker, and dual targeting of miR-185-mediated PAK6 activity and BCR-ABL1 may provide a valuable strategy for overcoming drug resistance in patients.


Assuntos
Resistencia a Medicamentos Antineoplásicos/genética , Leucemia Mielogênica Crônica BCR-ABL Positiva/genética , MicroRNAs/genética , Células-Tronco Neoplásicas/patologia , Quinases Ativadas por p21/genética , Animais , Regulação Leucêmica da Expressão Gênica/genética , Xenoenxertos , Humanos , Leucemia Mielogênica Crônica BCR-ABL Positiva/tratamento farmacológico , Leucemia Mielogênica Crônica BCR-ABL Positiva/metabolismo , Camundongos , Camundongos SCID , MicroRNAs/metabolismo , Células-Tronco Neoplásicas/metabolismo , Inibidores de Proteínas Quinases/uso terapêutico , Transdução de Sinais/fisiologia , Quinases Ativadas por p21/metabolismo
6.
Blood ; 133(9): 927-939, 2019 02 28.
Artigo em Inglês | MEDLINE | ID: mdl-30622121

RESUMO

Recent advances in single-cell molecular analytical methods and clonal growth assays are enabling more refined models of human hematopoietic lineage restriction processes to be conceptualized. Here, we report the results of integrating single-cell proteome measurements with clonally determined lymphoid, neutrophilic/monocytic, and/or erythroid progeny outputs from >1000 index-sorted CD34+ human cord blood cells in short-term cultures with and without stromal cells. Surface phenotypes of functionally examined cells were individually mapped onto a molecular landscape of the entire CD34+ compartment constructed from single-cell mass cytometric measurements of 14 cell surface markers, 20 signaling/cell cycle proteins, and 6 transcription factors in ∼300 000 cells. This analysis showed that conventionally defined subsets of CD34+ cord blood cells are heterogeneous in their functional properties, transcription factor content, and signaling activities. Importantly, this molecular heterogeneity was reduced but not eliminated in phenotypes that were found to display highly restricted lineage outputs. Integration of the complete proteomic and functional data sets obtained revealed a continuous probabilistic topology of change that includes a multiplicity of lineage restriction trajectories. Each of these reflects progressive but variable changes in the levels of specific signaling intermediates and transcription factors but shared features of decreasing quiescence. Taken together, our results suggest a model in which increasingly narrowed hematopoietic output capabilities in neonatal CD34+ cord blood cells are determined by a history of external stimulation in combination with innately programmed cell state changes.


Assuntos
Antígenos CD34/metabolismo , Linhagem da Célula , Sangue Fetal/metabolismo , Células-Tronco Hematopoéticas/metabolismo , Proteoma/análise , Análise de Célula Única/métodos , Diferenciação Celular , Células Cultivadas , Sangue Fetal/citologia , Células-Tronco Hematopoéticas/citologia , Humanos , Proteoma/metabolismo
7.
Blood ; 134(13): 1059-1071, 2019 09 26.
Artigo em Inglês | MEDLINE | ID: mdl-31383639

RESUMO

Human lymphopoiesis is a dynamic lifelong process that starts in utero 6 weeks postconception. Although fetal B-lymphopoiesis remains poorly defined, it is key to understanding leukemia initiation in early life. Here, we provide a comprehensive analysis of the human fetal B-cell developmental hierarchy. We report the presence in fetal tissues of 2 distinct CD19+ B-progenitors, an adult-type CD10+ve ProB-progenitor and a new CD10-ve PreProB-progenitor, and describe their molecular and functional characteristics. PreProB-progenitors and ProB-progenitors appear early in the first trimester in embryonic liver, followed by a sustained second wave of B-progenitor development in fetal bone marrow (BM), where together they form >40% of the total hematopoietic stem cell/progenitor pool. Almost one-third of fetal B-progenitors are CD10-ve PreProB-progenitors, whereas, by contrast, PreProB-progenitors are almost undetectable (0.53% ± 0.24%) in adult BM. Single-cell transcriptomics and functional assays place fetal PreProB-progenitors upstream of ProB-progenitors, identifying them as the first B-lymphoid-restricted progenitor in human fetal life. Although fetal BM PreProB-progenitors and ProB-progenitors both give rise solely to B-lineage cells, they are transcriptionally distinct. As with their fetal counterparts, adult BM PreProB-progenitors give rise only to B-lineage cells in vitro and express the expected B-lineage gene expression program. However, fetal PreProB-progenitors display a distinct, ontogeny-related gene expression pattern that is not seen in adult PreProB-progenitors, and they share transcriptomic signatures with CD10-ve B-progenitor infant acute lymphoblastic leukemia blast cells. These data identify PreProB-progenitors as the earliest B-lymphoid-restricted progenitor in human fetal life and suggest that this fetal-restricted committed B-progenitor might provide a permissive cellular context for prenatal B-progenitor leukemia initiation.


Assuntos
Feto/citologia , Linfopoese , Neprilisina/análise , Células Precursoras de Linfócitos B/citologia , Adulto , Medula Óssea/embriologia , Medula Óssea/metabolismo , Células Cultivadas , Feto/embriologia , Feto/metabolismo , Regulação da Expressão Gênica no Desenvolvimento , Humanos , Fígado/embriologia , Fígado/metabolismo , Neprilisina/genética , Células Precursoras de Linfócitos B/metabolismo , Transcriptoma
8.
Bioinformatics ; 34(23): 4131-4133, 2018 12 01.
Artigo em Inglês | MEDLINE | ID: mdl-29850785

RESUMO

Motivation: High-parameter single-cell technologies can reveal novel cell populations of interest, but studying or validating these populations using lower-parameter methods remains challenging. Results: Here, we present GateFinder, an algorithm that enriches high-dimensional cell types with simple, stepwise polygon gates requiring only two markers at a time. A series of case studies of complex cell types illustrates how simplified enrichment strategies can enable more efficient assays, reveal novel biomarkers and clarify underlying biology. Availability and implementation: The GateFinder algorithm is implemented as a free and open-source package for BioConductor: https://nalab.stanford.edu/gatefinder. Supplementary information: Supplementary data are available at Bioinformatics online.


Assuntos
Algoritmos , Biomarcadores/análise , Citometria de Fluxo , Software
9.
Blood ; 129(3): 307-318, 2017 Jan 19.
Artigo em Inglês | MEDLINE | ID: mdl-27827829

RESUMO

Several growth factors (GFs) that together promote quiescent human hematopoietic stem cell (HSC) expansion ex vivo have been identified; however, the molecular mechanisms by which these GFs regulate the survival, proliferation. and differentiation of human HSCs remain poorly understood. We now describe experiments in which we used mass cytometry to simultaneously measure multiple surface markers, transcription factors, active signaling intermediates, viability, and cell-cycle indicators in single CD34+ cord blood cells before and up to 2 hours after their stimulation with stem cell factor, Fms-like tyrosine kinase 3 ligand, interleukin-3, interleukin-6, and granulocyte colony-stimulating factor (5 GFs) either alone or combined. Cells with a CD34+CD38-CD45RA-CD90+CD49f+ (CD49f+) phenotype (∼10% HSCs with >6-month repopulating activity in immunodeficient mice) displayed rapid increases in activated STAT1/3/5, extracellular signal-regulated kinase 1/2, AKT, CREB, and S6 by 1 or more of these GFs, and ß-catenin only when the 5 GFs were combined. Certain minority subsets within the CD49f+ compartment were poorly GF-responsive and, among the more GF-responsive subsets of CD49f+ cells, different signaling intermediates correlated with the levels of the myeloid- and lymphoid-associated transcription factors measured. Phenotypically similar, but CD90-CD49f- cells (MPPs) contained lower baseline levels of multiple signaling intermediates than the CD90+CD49f+ cells, but showed similar response amplitudes to the same GFs. Importantly, we found activation or inhibition of AKT and ß-catenin directly altered immediate CD49f+ cell survival and proliferation. These findings identify rapid signaling events that 5 GFs elicit directly in the most primitive human hematopoietic cell types to promote their survival and proliferation.


Assuntos
Células-Tronco Hematopoéticas/citologia , Transdução de Sinais/fisiologia , Animais , Proliferação de Células , Sobrevivência Celular , Humanos , Imunofenotipagem , Peptídeos e Proteínas de Sinalização Intercelular , Camundongos , Fatores de Transcrição
10.
Proc Natl Acad Sci U S A ; 113(28): E4043-51, 2016 07 12.
Artigo em Inglês | MEDLINE | ID: mdl-27354534

RESUMO

Leaf economics spectrum (LES) theory suggests a universal trade-off between resource acquisition and storage strategies in plants, expressed in relationships between foliar nitrogen (N) and phosphorus (P), leaf mass per area (LMA), and photosynthesis. However, how environmental conditions mediate LES trait interrelationships, particularly at large biospheric scales, remains unknown because of a lack of spatially explicit data, which ultimately limits our understanding of ecosystem processes, such as primary productivity and biogeochemical cycles. We used airborne imaging spectroscopy and geospatial modeling to generate, to our knowledge, the first biospheric maps of LES traits, here centered on 76 million ha of Andean and Amazonian forest, to assess climatic and geophysical determinants of LES traits and their interrelationships. Elevation and substrate were codominant drivers of leaf trait distributions. Multiple additional climatic and geophysical factors were secondary determinants of plant traits. Anticorrelations between N and LMA followed general LES theory, but topo-edaphic conditions strongly mediated and, at times, eliminated this classic relationship. We found no evidence for simple P-LMA or N-P trade-offs in forest canopies; rather, we mapped a continuum of N-P-LMA interactions that are sensitive to elevation and temperature. Our results reveal nested climatic and geophysical filtering of LES traits and their interrelationships, with important implications for predictions of forest productivity and acclimation to rapid climate change.


Assuntos
Clima , Florestas , Folhas de Planta/crescimento & desenvolvimento , Tecnologia de Sensoriamento Remoto , Altitude , Geografia , Peru , Folhas de Planta/metabolismo
11.
Proc Natl Acad Sci U S A ; 113(2): E249-55, 2016 Jan 12.
Artigo em Inglês | MEDLINE | ID: mdl-26712020

RESUMO

The 2012-2015 drought has left California with severely reduced snowpack, soil moisture, ground water, and reservoir stocks, but the impact of this estimated millennial-scale event on forest health is unknown. We used airborne laser-guided spectroscopy and satellite-based models to assess losses in canopy water content of California's forests between 2011 and 2015. Approximately 10.6 million ha of forest containing up to 888 million large trees experienced measurable loss in canopy water content during this drought period. Severe canopy water losses of greater than 30% occurred over 1 million ha, affecting up to 58 million large trees. Our measurements exclude forests affected by fire between 2011 and 2015. If drought conditions continue or reoccur, even with temporary reprieves such as El Niño, we predict substantial future forest change.


Assuntos
Dessecação , Secas , Florestas , Folhas de Planta/fisiologia , California , Mudança Climática , Geografia , Imageamento Tridimensional , Água
12.
New Phytol ; 214(3): 973-988, 2017 May.
Artigo em Inglês | MEDLINE | ID: mdl-27349599

RESUMO

Average responses of forest foliar traits to elevation are well understood, but far less is known about trait distributional responses to elevation at multiple ecological scales. This limits our understanding of the ecological scales at which trait variation occurs in response to environmental drivers and change. We analyzed and compared multiple canopy foliar trait distributions using field sampling and airborne imaging spectroscopy along an Andes-to-Amazon elevation gradient. Field-estimated traits were generated from three community-weighting methods, and remotely sensed estimates of traits were made at three scales defined by sampling grain size and ecological extent. Field and remote sensing approaches revealed increases in average leaf mass per unit area (LMA), water, nonstructural carbohydrates (NSCs) and polyphenols with increasing elevation. Foliar nutrients and photosynthetic pigments displayed little to no elevation trend. Sample weighting approaches had little impact on field-estimated trait responses to elevation. Plot representativeness of trait distributions at landscape scales decreased with increasing elevation. Remote sensing indicated elevation-dependent increases in trait variance and distributional skew. Multiscale invariance of LMA, leaf water and NSC mark these traits as candidates for tracking forest responses to changing climate. Trait-based ecological studies can be greatly enhanced with multiscale studies made possible by imaging spectroscopy.


Assuntos
Altitude , Florestas , Folhas de Planta/fisiologia , Clima Tropical , Geografia , Modelos Lineares , Característica Quantitativa Herdável , Análise Espectral
13.
Blood ; 125(3): 504-15, 2015 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-25370416

RESUMO

Without effective therapy, chronic-phase chronic myeloid leukemia (CP-CML) evolves into an acute leukemia (blast crisis [BC]) that displays either myeloid or B-lymphoid characteristics. This transition is often preceded by a clinically recognized, but biologically poorly characterized, accelerated phase (AP). Here, we report that IKAROS protein is absent or reduced in bone marrow blasts from most CML patients with advanced myeloid disease (AP or BC). This contrasts with primitive CP-CML cells and BCR-ABL1-negative acute myeloid leukemia blasts, which express readily detectable IKAROS. To investigate whether loss of IKAROS contributes to myeloid disease progression in CP-CML, we examined the effects of forced expression of a dominant-negative isoform of IKAROS (IK6) in CP-CML patients' CD34(+) cells. We confirmed that IK6 disrupts IKAROS activity in transduced CP-CML cells and showed that it confers on them features of AP-CML, including a prolonged increased output in vitro and in xenografted mice of primitive cells with an enhanced ability to differentiate into basophils. Expression of IK6 in CD34(+) CP-CML cells also led to activation of signal transducer and activator of transcription 5 and transcriptional repression of its negative regulators. These findings implicate loss of IKAROS as a frequent step and potential diagnostic harbinger of progressive myeloid disease in CML patients.


Assuntos
Basófilos/patologia , Diferenciação Celular/efeitos dos fármacos , Eosinófilos/patologia , Fator de Transcrição Ikaros/antagonistas & inibidores , Leucemia Mieloide de Fase Crônica/patologia , Fator de Transcrição STAT5/metabolismo , Animais , Antígenos CD34/metabolismo , Apoptose/efeitos dos fármacos , Basófilos/efeitos dos fármacos , Basófilos/metabolismo , Western Blotting , Proliferação de Células/efeitos dos fármacos , Células Cultivadas , Progressão da Doença , Eosinófilos/efeitos dos fármacos , Eosinófilos/metabolismo , Citometria de Fluxo , Humanos , Fator de Transcrição Ikaros/genética , Fator de Transcrição Ikaros/metabolismo , Técnicas Imunoenzimáticas , Leucemia Mieloide de Fase Crônica/genética , Leucemia Mieloide de Fase Crônica/metabolismo , Camundongos , Camundongos Endogâmicos NOD , Camundongos SCID , Inibidores de Proteínas Quinases/farmacologia , Proteínas Tirosina Quinases/antagonistas & inibidores , RNA Mensageiro/genética , Reação em Cadeia da Polimerase em Tempo Real , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Fator de Transcrição STAT5/genética
14.
Proc Natl Acad Sci U S A ; 111(48): E5224-32, 2014 Dec 02.
Artigo em Inglês | MEDLINE | ID: mdl-25422434

RESUMO

Tropical forests convert more atmospheric carbon into biomass each year than any terrestrial ecosystem on Earth, underscoring the importance of accurate tropical forest structure and biomass maps for the understanding and management of the global carbon cycle. Ecologists have long used field inventory plots as the main tool for understanding forest structure and biomass at landscape-to-regional scales, under the implicit assumption that these plots accurately represent their surrounding landscape. However, no study has used continuous, high-spatial-resolution data to test whether field plots meet this assumption in tropical forests. Using airborne LiDAR (light detection and ranging) acquired over three regions in Peru, we assessed how representative a typical set of field plots are relative to their surrounding host landscapes. We uncovered substantial mean biases (9-98%) in forest canopy structure (height, gaps, and layers) and aboveground biomass in both lowland Amazonian and montane Andean landscapes. Moreover, simulations reveal that an impractical number of 1-ha field plots (from 10 to more than 100 per landscape) are needed to develop accurate estimates of aboveground biomass at landscape scales. These biases should temper the use of plots for extrapolations of forest dynamics to larger scales, and they demonstrate the need for a fundamental shift to high-resolution active remote sensing techniques as a primary sampling tool in tropical forest biomass studies. The potential decrease in the bias and uncertainty of remotely sensed estimates of forest structure and biomass is a vital step toward successful tropical forest conservation and climate-change mitigation policy.


Assuntos
Biomassa , Ecossistema , Florestas , Árvores/crescimento & desenvolvimento , Algoritmos , Ciclo do Carbono , Conservação dos Recursos Naturais/métodos , Geografia , Modelos Teóricos , Peru , Densidade Demográfica , Dinâmica Populacional , Tecnologia de Sensoriamento Remoto/métodos , Reprodutibilidade dos Testes , Clima Tropical
15.
Proc Natl Acad Sci U S A ; 111(47): E5016-22, 2014 Nov 25.
Artigo em Inglês | MEDLINE | ID: mdl-25385593

RESUMO

Terrestrial carbon conservation can provide critical environmental, social, and climate benefits. Yet, the geographically complex mosaic of threats to, and opportunities for, conserving carbon in landscapes remain largely unresolved at national scales. Using a new high-resolution carbon mapping approach applied to Perú, a megadiverse country undergoing rapid land use change, we found that at least 0.8 Pg of aboveground carbon stocks are at imminent risk of emission from land use activities. Map-based information on the natural controls over carbon density, as well as current ecosystem threats and protections, revealed three biogeographically explicit strategies that fully offset forthcoming land-use emissions. High-resolution carbon mapping affords targeted interventions to reduce greenhouse gas emissions in rapidly developing tropical nations.

16.
Biol Blood Marrow Transplant ; 22(11): 1945-1952, 2016 11.
Artigo em Inglês | MEDLINE | ID: mdl-27496214

RESUMO

Plerixafor (P) together with granulocyte colony-stimulating factor (G) is now recognized as an important strategy for mobilizing hematopoietic cells for use in patients given myelosuppressive therapies. However, quantitative comparisons of their ability to mobilize human cells with different hematopoietic activities in vitro or in vivo (in immunodeficient mice) and their interrelationships have not been investigated. To address these questions, we collected samples from 5 normal adult volunteers before and after administering P alone and from another 5 before and after a 4-day course of G and again after a subsequent injection of P. Measurements of their blood content of CD34+ cells, in vitro myeloid colony-forming cells, 3- and 6-week long-term culture (LTC) cell outputs, and levels of circulating human platelets, as well as myeloid and lymphoid cells obtained in immunodeficient mice that received transplants, showed all activities were maximal 4 hours after P preceded by G, and 3-week LTC outputs showed the highest concordance with the 3-week circulating human neutrophil levels obtained in mice that received transplants. Thus, human cells capable of producing neutrophils rapidly in vivo were optimally mobilized by the G + P protocol, and the 3-week LTC assay appears to offer a more specific predictor of their levels than conventional CD34+ cell or colony-forming cell counts.


Assuntos
Fator Estimulador de Colônias de Granulócitos/administração & dosagem , Mobilização de Células-Tronco Hematopoéticas/métodos , Compostos Heterocíclicos/administração & dosagem , Animais , Antígenos CD34/sangue , Antígenos CD34/efeitos dos fármacos , Benzilaminas , Plaquetas/citologia , Plaquetas/efeitos dos fármacos , Contagem de Células , Técnicas de Cultura de Células , Ciclamos , Xenoenxertos , Humanos , Camundongos , Camundongos SCID , Neutrófilos/citologia , Neutrófilos/efeitos dos fármacos
17.
PLoS Biol ; 11(8): e1001630, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23966837

RESUMO

Many normal adult tissues contain rare stem cells with extensive self-maintaining regenerative potential. During development, the stem cells of the hematopoietic and neural systems undergo intrinsically specified changes in their self-renewal potential. In the mouse, mammary stem cells with transplantable regenerative activity are first detectable a few days before birth. They share some phenotypic properties with their adult counterparts but are enriched in a subpopulation that displays a distinct gene expression profile. Here we show that fetal mammary epithelial cells have a greater direct and inducible growth potential than their adult counterparts. The latter feature is revealed in a novel culture system that enables large numbers of in vitro clonogenic progenitors as well as mammary stem cells with serially transplantable activity to be produced within 7 days from single fetal or adult input cells. We further show that these responses are highly dependent on novel factors produced by fibroblasts. These findings provide new avenues for elucidating mechanisms that regulate normal mammary epithelial stem cell properties at the single-cell level, how these change during development, and how their perturbation may contribute to transformation.


Assuntos
Células Epiteliais/citologia , Glândulas Mamárias Animais/citologia , Células 3T3 , Animais , Células Epiteliais/fisiologia , Feminino , Imuno-Histoquímica , Glândulas Mamárias Animais/fisiologia , Camundongos
18.
Ecol Appl ; 26(1): 55-66, 2016 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-27039509

RESUMO

Species interactions are susceptible to anthropogenic changes in ecosystems, but this has been poorly investigated in a spatially explicit manner in the case of plant parasitism, such as the omnipresent hemiparasitic mistletoe-host plant interactions. Analyzing such interactions at a large spatial scale may advance our understanding of parasitism patterns over complex landscapes. Combining high-resolution airborne imaging spectroscopy and LiDAR, we studied hemiparasite incidence within and among tree host stands to examine the prevalence and spatial distribution of hemiparasite load in ecosystems. Specifically, we aimed to assess: (1) detection accuracy of mistletoes on their oak hosts; (2) hemiparasitism prevalence within host tree canopies depending on tree height, and (3) spatial variation in hemiparasitism across fragmented woodlands, in a low-diversity mediterranean oak woodland in California, USA. We identified mistletoe infestations with 55-96% accuracy, and detected significant differences in remote-sensed spectra between oak trees with and without mistletoe infestation. We also found that host canopy height had little influence on infestation degree, whereas landscape-level variation showed consistent; non-random patterns: isolated host trees had twice the infestation load than did trees located at the core of forest fragments. Overall, we found that canopy exposure (i.e., lower canopy density or proximity to forest edge) is more important than canopy height for mistletoe infestation, and that by changing landscape structure, parasitic prevalence increased with woodland fragmentation. We conclude that reducing fragmentation in oak woodlands will minimize anthropogenic impact on mistletoe infestation at the landscape level. We argue that advanced remote sensing technology can provide baselines to quantitatively analyze and monitor parasite-host trajectories in light of global environmental change, and that this is a promising approach to be further tested in other temperate and tropical forests.


Assuntos
Florestas , Erva-de-Passarinho/fisiologia , Quercus/parasitologia , Análise Espectral/métodos , California , Demografia
19.
Blood ; 122(18): 3129-37, 2013 Oct 31.
Artigo em Inglês | MEDLINE | ID: mdl-24030380

RESUMO

Human cord blood (CB) offers an attractive source of cells for clinical transplants because of its rich content of cells with sustained repopulating ability in spite of an apparent deficiency of cells with rapid reconstituting ability. Nevertheless, the clonal dynamics of nonlimiting CB transplants remain poorly understood. To begin to address this question, we exposed CD34+ CB cells to a library of barcoded lentiviruses and used massively parallel sequencing to quantify the clonal distributions of lymphoid and myeloid cells subsequently detected in sequential marrow aspirates obtained from 2 primary NOD/SCID-IL2Rγ(-/-) mice, each transplanted with ∼10(5) of these cells, and for another 6 months in 2 secondary recipients. Of the 196 clones identified, 68 were detected at 4 weeks posttransplant and were often lympho-myeloid. The rest were detected later, after variable periods up to 13 months posttransplant, but with generally increasing stability throughout time, and they included clones in which different lineages were detected. However, definitive evidence of individual cells capable of generating T-, B-, and myeloid cells, for over a year, and self-renewal of this potential was also obtained. These findings highlight the caveats and utility of this model to analyze human hematopoietic stem cell control in vivo.


Assuntos
Diferenciação Celular , Proliferação de Células , Transplante de Células-Tronco de Sangue do Cordão Umbilical/métodos , Sangue Fetal/citologia , Animais , Antígenos CD34/metabolismo , Sequência de Bases , Linhagem da Célula , Células Clonais/classificação , Células Clonais/citologia , Células Clonais/metabolismo , Código de Barras de DNA Taxonômico , Sangue Fetal/metabolismo , Citometria de Fluxo , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Células HeLa , Humanos , Imunofenotipagem , Subunidade gama Comum de Receptores de Interleucina/deficiência , Subunidade gama Comum de Receptores de Interleucina/genética , Cinética , Camundongos , Camundongos Endogâmicos NOD , Camundongos Knockout , Camundongos SCID , Dados de Sequência Molecular , Oligonucleotídeos/genética , Fatores de Tempo , Transplante Heterólogo
20.
Blood ; 121(5): e1-4, 2013 Jan 31.
Artigo em Inglês | MEDLINE | ID: mdl-23233660

RESUMO

UNLABELLED: Better methods to characterize normal human hematopoietic cells with short-term repopulating activity cells (STRCs) are needed to facilitate improving recovery rates in transplanted patients.We now show that 5-fold more human myeloid cells are produced in sublethally irradiated NOD/SCID-IL-2Receptor-γchain-null (NSG) mice engineered to constitutively produce human interleukin-3, granulocyte-macrophage colony-stimulating factor and Steel factor (NSG-3GS mice) than in regular NSG mice 3 weeks after an intravenous injection of CD34 human cord blood cells. Importantly, the NSG-3GS mice also show a concomitant and matched increase in circulating mature human neutrophils. Imaging NSG-3GS recipients of lenti-luciferase-transduced cells showed that human cells being produced 3 weeks posttransplant were heterogeneously distributed, validating the blood as a more representative measure of transplanted STRC activity. Limiting dilution transplants further demonstrated that the early increase in human granulopoiesis in NSG-3GS mice reflects an expanded output of differentiated cells per STRC rather than an increase in STRC detection. KEY POINTS: NSG-3GS mice support enhanced clonal outputs from human short-term repopulating cells (STRCs) without affecting their engrafting efficiency. Increased human STRC clone sizes enable their more precise and efficient measurement by peripheral blood monitoring.


Assuntos
Transplante de Células-Tronco de Sangue do Cordão Umbilical , Sobrevivência de Enxerto , Fator Estimulador de Colônias de Granulócitos e Macrófagos/biossíntese , Interleucina-3/biossíntese , Mielopoese , Neutrófilos/metabolismo , Animais , Fator Estimulador de Colônias de Granulócitos e Macrófagos/genética , Humanos , Interleucina-3/genética , Camundongos , Camundongos Endogâmicos NOD , Camundongos Knockout , Camundongos SCID , Neutrófilos/citologia , Fatores de Tempo , Transplante Heterólogo
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