Detalhe da pesquisa
1.
PPI3D: a web server for searching, analyzing and modeling protein-protein, protein-peptide and protein-nucleic acid interactions.
Nucleic Acids Res
; 2024 Apr 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-38619046
2.
TemStaPro: protein thermostability prediction using sequence representations from protein language models.
Bioinformatics
; 40(4)2024 Mar 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-38507682
3.
Discriminating physiological from non-physiological interfaces in structures of protein complexes: A community-wide study.
Proteomics
; 23(17): e2200323, 2023 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37365936
4.
VoroIF-GNN: Voronoi tessellation-derived protein-protein interface assessment using a graph neural network.
Proteins
; 91(12): 1879-1888, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-37482904
5.
Prediction of protein assemblies by structure sampling followed by interface-focused scoring.
Proteins
; 91(12): 1724-1733, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-37578163
6.
VoroContacts: a tool for the analysis of interatomic contacts in macromolecular structures.
Bioinformatics
; 37(24): 4873-4875, 2021 12 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-34132767
7.
VoroCNN: deep convolutional neural network built on 3D Voronoi tessellation of protein structures.
Bioinformatics
; 37(16): 2332-2339, 2021 Aug 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-33620450
8.
Modeling of protein complexes in CASP14 with emphasis on the interaction interface prediction.
Proteins
; 89(12): 1834-1843, 2021 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-34176161
9.
Modeling SARS-CoV-2 proteins in the CASP-commons experiment.
Proteins
; 89(12): 1987-1996, 2021 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-34462960
10.
VoroMQA web server for assessing three-dimensional structures of proteins and protein complexes.
Nucleic Acids Res
; 47(W1): W437-W442, 2019 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-31073605
11.
Template-based modeling of diverse protein interactions in CAPRI rounds 38-45.
Proteins
; 88(8): 939-947, 2020 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-31697420
12.
Comparative analysis of methods for evaluation of protein models against native structures.
Bioinformatics
; 35(6): 937-944, 2019 03 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-30169622
13.
Structural modeling of protein complexes: Current capabilities and challenges.
Proteins
; 87(12): 1222-1232, 2019 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-31294859
14.
Estimation of model accuracy in CASP13.
Proteins
; 87(12): 1361-1377, 2019 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-31265154
15.
Modeling of protein complexes in CAPRI Round 37 using template-based approach combined with model selection.
Proteins
; 86 Suppl 1: 292-301, 2018 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-28905467
16.
The PPI3D web server for searching, analyzing and modeling protein-protein interactions in the context of 3D structures.
Bioinformatics
; 33(6): 935-937, 2017 03 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28011769
17.
VoroMQA: Assessment of protein structure quality using interatomic contact areas.
Proteins
; 85(6): 1131-1145, 2017 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-28263393
18.
The use of interatomic contact areas to quantify discrepancies between RNA 3D models and reference structures.
Nucleic Acids Res
; 42(9): 5407-15, 2014 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-24623815
19.
The CAD-score web server: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes.
Nucleic Acids Res
; 42(Web Server issue): W259-63, 2014 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-24838571
20.
Voronota: A fast and reliable tool for computing the vertices of the Voronoi diagram of atomic balls.
J Comput Chem
; 35(8): 672-81, 2014 Mar 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-24523197