Degradation of triclosan by peroxydisulfate/peroxomonosulfate binary oxidants activation under thermal conditions: Efficiency and mechanism.

Peroxydisulfate (PDS) and peroxymonosulfate (PMS) could be efficiently activated by heat to generate reactive oxygen species (ROS) for the degradation of organic contaminants. However, defects including the inefficiency treatment and pH dependence of monooxidant process are prominent. In this study, synergy of heat and the PDS-PMS binary oxidant was studied for efficient triclosan (TCS) degradation and apply in rubber wastewater. Under different pH values, the degradation of TCS followed pseudo-first-order kinetics, the reaction rate constant (kobs) value of TCS in heat/PDS/PMS system increased from 1.8 to 4.4 fold and 6.8-49.1 fold when compared to heat/PDS system and heat/PMS system, respectively. Hydroxyl radicals (·OH), sulfate radicals (SO4·-) and singlet oxygen (1O2) were the major ROS for the degradation of TCS in heat/PDS/PMS system. In addition, the steady-state concentrations of ·OH/1O2 and SO4·-/·OH/1O2 increased under acidic conditions and alkaline conditions, respectively. It was concluded that the pH regulated the ROS for degradation of TCS in heat/PDS/PMS system significantly. Based on the analysis of degradation byproducts, it was inferred that the dechlorination, hydroxylation and ether bond breaking reactions occurred during the degradation of TCS. Moreover, the biological toxicity of the ten byproducts was lower than that of TCS was determined. Furthermore, the heat/PDS/PMS system is resistant to the influence of water substrates and can effectively improve the water quality of rubber wastewater. This study provides a novel perspective for efficient degradation of TCS independent of pH in the heat/PDS/PMS system and its application of rubber wastewater.

Hydrogen Peroxide/Phosphoric Acid Modification of Hydrochars for Sulfamethoxazole and Carbamazepine Adsorption: The Role of Oxygen-Containing Functional Groups.

Emerging pollutants, such as sulfonamide antibiotics and pharmaceuticals, have been widely detected in water and soils, posing serious environmental and human health concerns. Thus, it is urgent and necessary to develop a technology for removing them. In this work, a hydrothermal carbonization method was used to prepare the hydrochars (HCs) by pine sawdust with different temperatures. To improve the physicochemical properties of HCs, phosphoric acid (H3PO4) and hydrogen peroxide (H2O2) were used to modify these HCs, and they were referred to as PHCs and HHCs, respectively. The adsorption of sulfamethoxazole (SMX) and carbamazepine (CBZ) by pristine and modified HCs was investigated systematically. Scanning electron microscopy (SEM) and X-ray diffraction (XRD) results indicated that the H2O2/H3PO4 modification led to the formation of a disordered carbon structure and abundant pores. X-ray photoelectron spectroscopy (XPS) and Fourier transform infrared (FTIR) spectroscopy results suggested that carboxyl (-COOH) and hydroxyl (-OH) functional groups of HCs increased after modification, which is the main reason for the higher sorption of SMX and CBZ on H3PO4/H2O2-modified HCs when compared with pristine HCs. In addition, the positive correlation between -COOH/C=O and logKd of these two chemicals also suggested that oxygen-containing functional groups played a crucial role in the sorption of SMX and CBZ. The strong hydrophobic interaction and π-π interaction between CBZ and pristine/modified HCs resulted in its higher adsorption when compared with SMX. The results of this study provide a novel perspective on the investigation of adsorption mechanisms and environmental behaviors for organic contaminants by pristine and modified HCs.

Green manuring alters reactive N losses and N pools in arable soils: A meta-regression study.

Green manuring is a conservation agricultural practice that improves soil quality and crop yield. However, increasing the active nitrogen (N) and carbon (C) pools during green manure (GM) amendment may accelerate soil N transformation and stimulate N loss. Previous studies have reported the effects of cover crop incorporation on N2O emission; however, the driving mechanisms and other N losses remain unclear. Therefore, we conducted a comprehensive meta-analysis of 109 published articles (517 paired observations) to clarify the effects of GM amendment on soil reactive N (Nr) losses (N2O emissions, NH3 volatilization, and N leaching and runoff), N pools, and N cycling functional gene abundance. The results showed that green manuring increased soil microbial biomass N (MBN) and NO3--N concentrations and stimulated N2O emission but significantly lowered N leaching and yield-scaled NH3 volatilization. Practices of green manuring made a dominant contribution to the variation in N2O emissions and NH3 volatilization after GM application. Furthermore, applying legume-based GM, using N derived from GM (GMN) as an additional input, and short-term GM amendment each stimulated N2O emissions. In contrast, adopting non-legume GM, using GMN to partially substitute mineral N, and applying GM to the soil surface or paddy field mitigated NH3 loss during GM amendment. Additionally, the variation in NH3 volatilization was positively related to soil pH and N application rate (NAR) but had a negative relationship with mean annual precipitation (MAP). This study highlighted the marked effects of green manuring on soil N retention and loss. Agricultural operations that adopt GM amendment should select suitable GM species and optimize mineral N inputs to minimize N loss.

The role of superoxide anion to Cr(VI) reduction by pine biochar.

It has been reported that Cr(VI) can be reduced by biochar because of its redox activity. Considering the anionic form of Cr(VI), we hypothesize that the reduction in aqueous phase is significant. However, the contribution of different reactive oxygen species in the biochar-Cr(VI) reaction system has not been distinguished. Herein, we quantitatively identified Cr(VI) adsorption and reduction in biochar systems. The reduction content of Cr(VI) was 1.5 times higher in untreated conditions than in anaerobic conditions. The disappearance of·O2- under anaerobic conditions illustrated that·O2- may be involved in the reduction of Cr(VI). Quenching of·O2- resulted in a decrease of Cr(VI) reduction by 34%, while 1O2 was negligible, probably due to the stronger electron-donating capacity of·O2-. The degradation of nitrotetrazolium blue chloride (quenching agent of·O2-) confirmed that the reduction process of·O2- mainly occurred in the liquid-phase. Boehm titration and quantification of·O2- further elucidated the significant correlation (P < 0.05) between phenolic groups and the formation of·O2-, which implied that phenolic groups acted as the primary electron donors in generating·O2-. This study highlights the importance of the liquid-phase reduction process in removing Cr(VI), which provides theoretical support for biochar conversion of Cr(VI).

Degradation mechanisms and toxicity determination of bisphenol A by FeOx-activated peroxydisulfate under ultraviolet light.

Ultraviolet light (UV)-assisted advanced oxidation processes (AOPs) are commonly used to degrade organic contaminants. However, this reaction system's extensive comprehension of the degradation mechanisms and toxicity assessment remains inadequate. This study focuses on investigating the degradation mechanisms and pathways of bisphenol A (BPA), generation of reactive oxygen species (ROS), and toxicity of degradation intermediates in UV/PDS/ferrous composites (FeOx) systems. The degradation rate of BPA gradually increased from the initial 11.92% to 100% within 120 min. Sulfate radicals (SO4.-), hydroxyl radicals (.OH), superoxide anions (O2.-), and singlet oxygen (1O2) were the primary factors in the photocatalytic degradation of BPA in the UV/PDS/FeOx systems. The main reactions of BPA in this system were deduced to be ß-bond cleavage, hydroxyl substitution reaction, hydrogen bond cleavage, and oxidation reaction. A trend of decreasing toxicity for the degradation intermediates of BPA was observed according to the toxicity investigations. The efficient degradation of BPA in UV/PDS/FeOx systems provided theoretical data for AOPs, which will improve the understanding of organic contaminants by FeOx in natural industry wastewater.

Biochar conductivity and electron donating capability control Cr(VI) bioreduction.

Biochar can facilitate Cr(VI) bioreduction, but it is still undetermined which biochar property control this process. We observed that the apparent Cr(VI) bioreduction by Shewanella oneidensis MR-1 could be identified as a fast and a relatively slow processes. The fast-bioreduction rates (rf0) were 2-15 times higher than the slow-bioreduction rates (rs0). In this study, we investigated the kinetics and efficiency of biochar in promoting Cr(VI) reduction by S. oneidensis MR-1 in the neutral solution using a "dual-process model" (fast and slow processes), and analyzed the mechanisms of biochar concentration, conductivity, particle size and other properties on these two processes. The correlation analysis of these rate constants and biochar properties was carried out. The fast-bioreduction rates were associated with higher conductivity and smaller particle sizes of biochar, which facilitated the direct electron transfer from Shewanella oneidensis MR-1 to Cr(VI). The Cr(VI) slow-bioreduction rates (rs0) were mainly determined by the electron donating capability of biochar and independent of the cell concentration. Our results suggested that Cr(VI) bioreduction was mediated by both electron conductivity and redox potential of biochar. This result is instructive for biochar production. Manipulating biochar properties to control fast and slow Cr(VI) reduction may be helpful to effectively remove or detoxify Cr(VI) in the environment.

FexO4-enhanced degradation of bisphenol A in visible light/peroxydisulfate system: production of singlet state oxygen.

In this study, ferrous composites (FexO4) were prepared by microreactor to activate peroxydisulfate (PDS) for the degradation of bisphenol A (BPA) with visible (Vis) light irradiation. X-ray diffraction (XRD), energy-dispersive spectrometry (EDS), X-ray photoelectron spectroscopy (XPS), and scanning electron microscope (SEM) were used to characterize the morphology and crystal phase of FeXO4. Photoluminescence (PL) spectroscopy combined with amperometric tests were used to determine the role of PDS on the performance of photocatalytic reaction. The main reactive species and intermediates for BPA removal were determined by electron paramagnetic resonance (EPR) measurement and quenching experiments. The result indicated that singlet state oxygen (1O2) contributed more to the BPA degradation than that of other reactive radicals (·OH, SO4·- and ·O2-); these reactive radicals and 1O2 formed by the reaction between photo-generated electrons (e-) and holes (h+) of FexO4 and PDS. During this process, the consumption of e- and h+ also improved their separation efficiency and thus enhanced the degradation of BPA. In addition, the photocatalytic activity of FexO4 in Vis/FexO4/PDS system was 3.2-fold and 6.6-fold higher than that of single FexO4 and PDS under Vis light, respectively. The Fe2+/Fe3+ cycle could effectively drive the photocatalytic activation of PDS through indirect electron transfer and the formation of reactive radicals. This work illustrated that the degradation of BPA was rapidly in Vis/FexO4/PDS system mainly through 1O2, which further improve our understanding on the efficient removal of organic contaminants in the environment.

Plasma exchange plus glucocorticoids in the treatment of immune checkpoint inhibitor-induced myocarditis: A case series and review.

Immune checkpoint inhibitors (ICIs), including antiprogrammed cell-death (PD)-1/anti-PD-ligand (PDL-1) monoclonal antibodies, are effective at improving the prognosis of patients with cancer. Among immune-related adverse events, myocarditis associated with anti-PD-1/anti-PD-L1 antibodies is rare but lacks effective treatment and mortality is very high. In this study, the authors extracted data from the previous 8 years from electronic medical records housed in the hospital information system to identify patients hospitalized with myocarditis putatively caused by anti-PD-1/anti-PD-L1 tumor therapy. Clinical data from these patients are reported. Four patients who developed myocarditis after undergoing treatment with anti-PD-1/anti-PD-L1 antibodies for malignant tumors, all of whom responded favorably to therapy consisting of plasma exchange and glucocorticoids for myocarditis, and all patients improved and were discharged from hospital. Plasma exchange plus systemic glucocorticoids may be effective for treating anti-PD-1/anti-PD-L1 antibody-induced myocarditis in patients with cancer.

Palladium electrodes for molecular tunnel junctions.

Gold has been the metal of choice for research on molecular tunneling junctions, but it is incompatible with complementary metal-oxide-semiconductor fabrication because it forms deep level traps in silicon. Palladium electrodes do not contaminate silicon, and also give higher tunnel current signals in the molecular tunnel junctions that we have studied. The result is cleaner signals in a recognition-tunneling junction that recognizes the four natural DNA bases as well as 5-methyl cytosine, with no spurious background signals. More than 75% of all the recorded signal peaks indicate the base correctly.

Dynamics of DNA translocation in a solid-state nanopore immersed in aqueous glycerol.

Nanopore-based technologies have attracted much attention recently for their promising use in low-cost and high-throughput genome sequencing. To achieve single-base resolution of DNA sequencing, it is critical to slow and control the translocation of DNA, which has been achieved in a protein nanopore but not yet in a solid-state nanopore. Using all-atom molecular dynamics simulations, we investigated the dynamics of a single-stranded DNA (ssDNA) molecule in an aqueous glycerol solution confined in a SiO(2) nanopore. The friction coefficient ξ of the ssDNA molecule is found to be approximately 18 times larger in glycerol than in water, which can dramatically slow the motion of ssDNA. The electrophoretic mobility µ of ssDNA in glycerol, however, decreases by almost the same factor, yielding the effective charge (ξµ) of ssDNA being roughly the same as in water. This is counterintuitive since the ssDNA effective charge predicted from the counterion condensation theory varies with the dielectric constant of a solvent. Due to the larger friction coefficient of ssDNA in glycerol, we further show that glycerol can improve trapping of ssDNA in the DNA transistor, a nanodevice that can be used to control the motion of ssDNA in a solid-state nanopore. Simulation results of slowing ssDNA translocation were confirmed in our nanopore experiment.

Functional Biochar and Its Balanced Design.

Biochar has attracted increasing research attention. Various modification methods have been proposed to enhance a certain biochar function. However, these modifications may also result in an unstable structure, additional energy consumption, secondary pollution, and/or extra cost. Balanced consideration of different aspects will ensure the sustainable development of biochar technology. This review first summarizes the most commonly used methods for biochar modification. These methods are categorized according to the purposes of modification, such as surface area enlargement, persistent free radical manipulation, magnetism introduction, and redox potential enhancement. More importantly, a systematic analysis and discussion are provided regarding the balanced consideration of biochar designs, such as the balance between effectiveness and stability, functions and risks, as well as effectiveness and cost. Then, perspectives regarding biochar modification are presented. This review calls for attention that biochar modifications should not be evaluated for their functions only. A balanced design of biochars will ensure both the practicability and the effectiveness of this technology.

An inner-filter-effect based ratiometric fluorescent sensor for the detection of uranyl ions in real samples.

In this work, a ratiometric fluorescence system was designed for the detection of trace UO22+ in water based on the inner filter effect (IFE) between gold nanoparticles (AuNPs) and gold nanoclusters (AuNCs). IFE-induced fluorescence quenching was achieved due to the enhanced complementary overlap between the absorption spectra of AuNPs and the emission spectrum of AuNCs after the addition of UO22+. Blue carbon dots (B-CDs) were added to serve as reference fluorophores to expand the color tonality and make human eye recognition easier. The ratiometric fluorescent sensor demonstrated a unique fluorescence color change from red to blue when different doses of UO22+ were added, with a detection limit of 8.4 nM. Furthermore, the ratiometric fluorescent sensor was effectively used for UO22+ determination in real-world water samples, with acceptable recoveries.

"Seminal testosterone", rising viewpoint of local spermatogenesis in nonobstructive azoospermia: One center long-term bidirectional cohort study.

Objective: Reproductive hormones are a traditional good method to evaluate spermatogenesis but might not accurately represent local spermatogenesis. To find a more accurate method, seminal reproductive hormones were studied. Methods: A bidirectional cohort study was performed. A total of 126 infertile men from 2018 to 2019 were retrospectively analyzed. They were divided into nonobstructive azoospermia (NOA), oligozoospermia (OLZ) and normal (NOR) groups. A prospective study was conducted on patients in the NOA and OLZ groups for 2 years. Microscopic testicular sperm extraction was performed for NOA patients, who were divided into a focal spermatogenesis group (FS) and an idiopathic azoospermia group (IA). Drug treatment was for OLZ patients, who were divided into a valid group (VA) and an invalid group (IN). The differences in sperm parameters and reproductive hormones were compared. ANOSIM analysis was used between and within groups. Pearson correlation analysis, CO inertia analysis and Proctor's analysis were for relationships. ROC curve for the specificity and sensitivity. Time series analysis was for the trends between hormones and time. Results: The b-FSH, b-LH, s-T and ΔT in the NOA group were significantly higher than those in the OLZ and NOR groups. However, the s-FSH, s-E2, s-P, ΔFSH, ΔLH, ΔP and ΔE2 were lower. Thirty-one NOA patients underwent MTSE, of whom 12 had sperm (FS) and 19 had no sperm (IA). The s-FSH and s-E2 of the FS group were higher than those of the IA group. Twenty-six OLZ patients completed 30 days of treatment, of which 11 had an improved sperm count (VA) and 15 had no (IN). The ΔT of the VA group was higher than that of the IN group. After follow-up for 2 years, 18 patients' results showed that b-FSH, b-LH and s-T were different over time, with delays of 19, 3 and -19 days. SC is closely related to pH, s-FSH, s-LH, s-E2, s-P, s-T, b-FSH, b-LH, ΔFSH, ΔLH, ΔP, ΔE2 and ΔT. There were complex common trends and relationships between different kinds of hormones. s-FSH, s-LH, s-E2, s-P, s-T, b-FSH and b-LH were useful to judge spermatogenesis, of which s-T, b-FSH and b-LH were more sensitive. If s-T, b-FSH and b-LH reached 64.4, 9.4 and 4.7, respectively, their prediction performance was the strongest. Conclusion: Seminal testosterone is sensitive for judging local spermatogenesis in nonobstructive azoospermia patients, which may be the direction of local spermatogenesis in nonobstructive azoospermia. Clinical trial registration: http://www.chictr.org.cn/index.aspx, identifier ChiCTR2200060463.

Prevalence of atrial fibrillation and the risk of cardiovascular mortality among hypertensive elderly population in northeast China.

Little is known about the epidemiology and impact of atrial fibrillation (AF) on cardiovascular diseases (CVD) mortality among hypertensive elderly population in northeast China. The community-based study included 4497 hypertensive elderly residents aged ≥65 years who lived in northeast China from September 2017 to March 2019. Information on CVD deaths was obtained from baseline until July 31, 2021. Cox proportional hazard regression models were performed in the evaluation of CVD mortality. We identified 101 persons with AF. The prevalence of AF was 2.2% among elderly hypertensive population, which increased significantly with age. The prevalence of AF was higher in men than in women. The awareness rate was 51.5%, higher in urban areas than in rural areas (68.8% vs 43.5%, P = .018). Only 4.0% patients received oral anticoagulant (OAC) therapy among AF patients. Moreover, diabetes (26.7%) and dyslipidemia (37.6%) were highly prevalent in AF patients. Furthermore, 212 persons died due to CVD (14.7/1000 person-years) during a median follow-up of 3.2 years. AF patients had a 3.42 (95% CI: 2.07-5.63) times higher risk of CVD mortality than the patients without AF in the fully adjusted model. Therefore, the burden of AF among hypertensive elderly population in northeast China was considerable. Long-term screening and management strategies for AF and related risk factors are required among hypertensive elderly in northeast China.

Electrochemical protection of thin film electrodes in solid state nanopores.

Solid state nanopores are a core element of next-generation single molecule tools in the field of nano-biotechnology. Thin film electrodes integrated into a pore can interact with charges and fields within the pore. In order to keep the nanopore open and thus functional electrochemically induced surface alteration of electrode surfaces and bubble formation inside the pore have to be eliminated. This paper provides electrochemical analyses of nanopores drilled into TiN membranes which in turn were employed as thin film electrodes. We studied physical pore integrity and the occurrence of water decomposition yielding bubble formation inside pores by applying voltages between -4.5 and +4.5 V to membranes in various protection stages continuously for up to 24 h. During potential application pores were exposed to selected electrolyte-solvent systems. We have investigated and successfully eliminated electrochemical pore oxidation and reduction as well as water decomposition inside nanopores of various diameters ranging from 3.5 to 25 nm in 50 nm thick TiN membranes by passivating the nanopores with a plasma-oxidized layer and using a 90% solution of glycerol in water as KCl solvent. Nanopore ionic conductances were measured before and after voltage application in order to test for changes in pore diameter due to electrochemical oxidation or reduction. TEM imaging was used to confirm these observations. While non-passivated pores were electrochemically oxidized, neither electrochemical oxidation nor reduction was observed for passivated pores. Bubble formation through water decomposition could be detected in non-passivated pores in KCl/water solutions but was not observed in 90% glycerol solutions. The use of a protective self-assembled monolayer of hexadecylphosphonic acid (HDPA) was also investigated.

The role of solvents and oxygen-containing functional groups on the adsorption of Bisphenol A on carbon nanotubes.

The wide application of endocrine disruptors (EDs) has recently created great public concerns because of their toxicities. Previous studies have stated that the effect of oxygen-containing functional groups of carbon nanotubes (CNTs) for Bisphenol A (BPA) sorption, but no study has been quantified the exact contribution of the oxygen-containing functional groups. Moreover, the role of solvents on the adsorption of BPA should be considered. Considering the well properties of CNTs, graphitized (MG), carboxylated (MC) and hydroxylated (MH) multi-walled CNTs were selected as model adsorbents, BPA was used as model adsorbate. Solubility and single point adsorption coefficient (logKd) of BPA were n-hexadecane > water > methanol, suggesting that hydrophobic interaction was the main mechanism for BPA sorption on CNTs. For different functional groups of CNTs, π-π interaction between MH and BPA may be stronger than that of MC, and thus the sorption of BPA on MH was higher than that of MC. Moreover, hydrogen bond resulted in the higher adsorption of BPA on MH when compared with MC. The oxygen-containing functional groups of CNTs played a key role for BPA sorption in methanol because the values of contribution were 20%-45% for -OH and were 5%-25% for -COOH. In n-hexadecane, other factors such as hydrophobic interactions should be considered because the contribution percentages of -OH were ca.15% and the values for -COOH were ca.10%. The results are expected to provide important information on the interaction of EDs and CNTs.

Reduction of silver ions to silver nanoparticles by biomass and biochar: Mechanisms and critical factors.

The reduction of metal ions by biomasses (BMs) and biochars (BCs) is often neglected when evaluating the environmental behavior and risk of heavy metals. In this study, the formation mechanisms of silver nanoparticles (AgNPs) when Ag+ coexists with BMs/BCs were investigated. Four types of BMs (pine sawdust, bagasse, lignin, and cellulose) as well as their BCs were investigated for their roles in transforming Ag+ to AgNPs. The electron donating capacity (EDC) of all the BMs/BCs was larger than zero. The UV-Vis spectrometer and scanning electron microscopy-energy dispersive X-ray spectrometer (SEM-EDX) analysis confirmed the formation of AgNPs. The quantities of AgNPs formed by BM systems were higher than that by their corresponding BCs. The quantities of formed AgNPs by bagasse and its BCs were the highest when compared with other BMs/BCs, which may be due to their highest EDC values. We found that hydroxyl group (-OH) was the important redox-active functional group in BMs and BCs that contributed to Ag+ reduction according to the results from X-ray photoelectron spectrometric (XPS) and Fourier transform infrared spectroscopic (FTIR) analyses. AgNPs formation was enhanced at elevated pH, probably because of the deprotonated functional groups with high EDC values and electron density. The higher temperature could enhance the formation of AgNPs, suggesting that the reduction of Ag+ by BMs/BC was a thermodynamically favored process. This study illustrated that Ag+ was transformed to AgNPs by BMs and BCs through the redox reactive -OH of BMs/BCs, which further improved our understanding on the formation of AgNPs in the environment.

Pyrolyzed carbon derived from red soil as an efficient catalyst for cephalexin removal.

Red soil, a typical soil type in southern China, has been deemed infertile or nutrient-deficient. In this study, red soil was firstly utilized as a substrate for preparing catalysts, which were then successfully applied to the catalytic wet peroxide oxidation (CWPO) of cephalexin. The highest cephalexin removal was 95.23% and TOC removal was 60.58%, with the catalyst pyrolyzed at 500 °C (RC500). The high iron content and proportion of Fe(II) on the surface of RC500 was responsible for the decomposition of H2O2 into· OH. Moreover, the porous structure and existence of other minerals (such as SiO2 and Al2O3) in the catalyst were also significant for enhancing the catalytic activity of RC500. Afterwards, the influencing parameters, including temperature, pH, the dose of H2O2, and catalyst, were examined for cephalexin degradation. It was noteworthy that RC500 was efficient in treating hospital wastewater when using a self-design pilot device. A density functional theory analysis of cephalexin was conducted to establish the possible position attacked by ·OH, and the possibly ruptured one. Meanwhile, the intermediates generated during CWPO were identified. Finally, a reliable degradation pathway of cephalexin was proposed on the basis of the results.

Base-by-base ratcheting of single stranded DNA through a solid-state nanopore.

We investigate the base-by-base translocation dynamics of single-stranded DNA (ssDNA) confined in a solid-state nanopore dressed with an electrostatic trap, using all-atom molecular dynamics (MD) simulation. We observe on the simulation time scale of tens of nanoseconds that ssDNA can be driven through the nanopore in a ratchetlike fashion, with a step size equal to the spacing between neighboring phosphate groups in the ssDNA backbone. A 1D-Langevin-like model is derived from atomistic dynamics which can quantitatively describe simulation results and can be used to study dynamics on longer time scales. The controlled ratcheting motion of DNA could potentially enhance the signal-to-noise ratio for nanoelectronic DNA sensing technologies.

Electrochemical characterization of thin film electrodes toward developing a DNA transistor.

The DNA-Transistor is a device designed to control the translocation of single-stranded DNA through a solid-state nanopore. Functionality of the device is enabled by three electrodes exposed to the DNA-containing electrolyte solution within the pore and the application of a dynamic electrostatic potential well between the electrodes to temporarily trap a DNA molecule. Optimizing the surface chemistry and electrochemical behavior of the device is a necessary (but by no means sufficient) step toward the development of a functional device. In particular, effects to be eliminated are (i) electrochemically induced surface alteration through corrosion or reduction of the electrode surface and (ii) formation of hydrogen or oxygen bubbles inside the pore through water decomposition. Even though our motivation is to solve problems encountered in DNA transistor technology, in this paper we report on generic surface chemistry results. We investigated a variety of electrode-electrolyte-solvent systems with respect to their capability of suppressing water decomposition and maintaining surface integrity. We employed cyclic voltammetry and long-term amperometry as electrochemical test schemes, X-ray photoelectron spectroscopy, atomic force microscopy, and scanning, as well as transmission electron microscopy as analytical tools. Characterized electrode materials include thin films of Ru, Pt, nonstoichiometric TiN, and nonstoichiometric TiN carrying a custom-developed titanium oxide layer, as well as custom-oxidized nonstoichiometric TiN coated with a monolayer of hexadecylphosphonic acid (HDPA). We used distilled water as well as aqueous solutions of poly(ethylene glycol) (PEG-300) and glycerol as solvents. One millimolar KCl was employed as electrolyte in all solutions. Our results show that the HDPA-coated custom-developed titanium oxide layer effectively passivates the underlying TiN layer, eliminating any surface alterations through corrosion or reduction within a voltage window from -2 V to +2 V. Furthermore, we demonstrated that, by coating the custom-oxidized TiN samples with HDPA and increasing the concentration of PEG-300 or glycerol in aqueous 1 mM KCl solutions, water decomposition was suppressed within the same voltage window. Water dissociation was not detected when combining custom-oxidized HDPA-coated TiN electrodes with an aqueous 1 mM KCl-glycerol solution at a glycerol concentration of at least 90%. These results are applicable to any system that requires nanoelectrodes placed in aqueous solution at voltages that can activate electrochemical processes.