Enhanced Rare Earth Element Mobilization in a Mountain Watershed of the Colorado Mineral Belt with Concomitant Detection in Aquatic Biota: Increasing Climate Change-Driven Degradation to Water Quality.

In the western USA, one legacy of historic mining is drainage of acidic, metal-rich water generated by exposure to oxygen of sulfide minerals in mine workings, referred to as acid mine drainage (AMD). Streams receiving AMD and natural acid rock drainage (ARD) have a low pH, high dissolved metal concentrations, and extensive streambed oxide deposits. Recently, enhanced ARD generation in the Snake River watershed in the Rocky Mountains has been shown to be associated with warmer summer air temperatures, which has been attributed to expanding weathering fronts that promote oxidation due to earlier drying of shallow soils. In mountain watersheds where complex orogeny disseminated minerals throughout the landscape, weathering processes may also mobilize rare earth elements (REEs). We report that in the Snake River REEs are currently distributed in streams at concentrations ranging from 1 to 100 µg/L. Further, analysis of archived sample indicates that REE increases over time are also associated with increased summer air temperatures. In downstream reaches where the Snake River discharges into a water supply reservoir, colloidal and particulate metal oxides are abundant and sorptive processes may influence REE speciation. We also show that REEs accumulate in benthic invertebrates at concentrations comparable to toxic metals associated with ARD.

Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities.

Few studies have comprehensively investigated the temporal variability in soil microbial communities despite widespread recognition that the belowground environment is dynamic. In part, this stems from the challenges associated with the high degree of spatial heterogeneity in soil microbial communities and because the presence of relic DNA (DNA from dead cells or secreted extracellular DNA) may dampen temporal signals. Here, we disentangle the relationships among spatial, temporal, and relic DNA effects on prokaryotic and fungal communities in soils collected from contrasting hillslopes in Colorado, USA. We intensively sampled plots on each hillslope over 6 months to discriminate between temporal variability, intraplot spatial heterogeneity, and relic DNA effects on the soil prokaryotic and fungal communities. We show that the intraplot spatial variability in microbial community composition was strong and independent of relic DNA effects and that these spatial patterns persisted throughout the study. When controlling for intraplot spatial variability, we identified significant temporal variability in both plots over the 6-month study. These microbial communities were more dissimilar over time after relic DNA was removed, suggesting that relic DNA hinders the detection of important temporal dynamics in belowground microbial communities. We identified microbial taxa that exhibited shared temporal responses and show that these responses were often predictable from temporal changes in soil conditions. Our findings highlight approaches that can be used to better characterize temporal shifts in soil microbial communities, information that is critical for predicting the environmental preferences of individual soil microbial taxa and identifying linkages between soil microbial community composition and belowground processes.IMPORTANCE Nearly all microbial communities are dynamic in time. Understanding how temporal dynamics in microbial community structure affect soil biogeochemistry and fertility are key to being able to predict the responses of the soil microbiome to environmental perturbations. Here, we explain the effects of soil spatial structure and relic DNA on the determination of microbial community fluctuations over time. We found that intensive spatial sampling was required to identify temporal effects in microbial communities because of the high degree of spatial heterogeneity in soil and that DNA from nonliving sources masks important temporal patterns. We identified groups of microbes with shared temporal responses and show that these patterns were predictable from changes in soil characteristics. These results provide insight into the environmental preferences and temporal relationships between individual microbial taxa and highlight the importance of considering relic DNA when trying to detect temporal dynamics in belowground communities.