Direct optical detection of aptamer conformational changes induced by target molecules.

Aptamers are single-stranded DNA/RNA oligomers that fold into three-dimensional conformations in the presence of specific molecular targets. Surface-enhanced Raman spectroscopy (SERS) of thiol-bound DNA aptamer self-assembled monolayers on Au nanoshell surfaces provides a direct, label-free detection method for the interaction of DNA aptamers with target molecules. A spectral cross-correlation function, Gamma, is shown to be a useful metric to quantify complex changes in the SERS spectra resulting from conformational changes in the aptamer induced by target analytes. While the pristine, unexposed anti-PDGF (PDGF = platelet-derived growth factor) aptamer yields highly reproducible spectra with Gamma = 0.91 +/- 0.01, following incubation with PDGF, the reproducibility of the SERS spectra is dramatically reduced, yielding Gamma = 0.67 +/- 0.02. This approach also allows us to discriminate the response of a cocaine aptamer to its target from its weaker response to nonspecific analyte molecules.

Surface-enhanced Raman spectroscopy of DNA.

We report a method for obtaining highly reproducible surface-enhanced Raman spectroscopy (SERS) of single and double-stranded thiolated DNA oligomers. Following a protocol that relaxes the DNA into an extended conformation, SERS spectra of DNA oligonucleotides are found to be extremely similar, strongly dominated by the Stokes modes of adenine. A spectral correlation function analysis useful for assessing reproducibility and for quantifying the highly complex changes corresponding to modifications in molecular conformation of the adsorbate molecules is introduced. This approach is used to monitor the interaction of DNA with cisplatin, a chemotherapy agent in widespread use.

The Safety of an Adjuvanted Autologous Cancer Vaccine Platform in Canine Cancer Patients.

Canine cancer rates are similar to humans, though the therapeutic options might be limited. Inducing a patient's own immune system to have an anti-tumor response is an attractive approach to cancer therapy. In this safety study, autologous tumor vaccines produced specifically for each canine patient were combined with Advax™, a novel non-inflammatory immunomodulator and vaccine adjuvant and were tested for safety in a diverse range of patient presentations alone or in combination with other treatments. Canine patients had their tumor biopsied, debulked or resected and the tumor antigens were processed into an autologous vaccine formulated with Advax™ adjuvant with or without rhizavidin as an additional immune stimulant. Patients treated early in the trial received two intramuscular (IM) doses, 2 weeks apart. As the study progressed and no issues of safety were observed, the protocol was changed to weekly vaccinations for 4 weeks followed by monthly booster shots. Over the 150 I.M injections delivered to date, the vaccine was found to be very safe and no significant adverse reactions were observed. These results justify ongoing development and future controlled studies of this autologous vaccine approach.

Applications of nanoparticles to diagnostics and therapeutics in colorectal cancer.

Nanotechnology has considerable promise for the detection, staging and treatment of cancer. Here, we outline one such promising application: the use of nanostructures with surface-bound ligands for the targeted delivery and ablation of colorectal cancer (CRC), the third most common malignancy and the second most common cause of cancer-related mortality in the US. Normal colonic epithelial cells as well as primary CRC and metastatic tumors all express a unique surface-bound guanylyl cyclase C (GCC), which binds the diarrheagenic bacterial heat-stable peptide enterotoxin ST. This makes GCC a potential target for metastatic tumor ablation using ST-bound nanoparticles in combination with thermal ablation with near-infrared or radiofrequency energy absorption. Furthermore, the incorporation of iron or iron oxide into such structures would provide advantages for magnetic resonance imaging (MRI). Although the scenarios outlined in this article are hypothetical, they might stimulate ideas about how other cancers could be attacked using nanotechnology.

Cu nanoshells: effects of interband transitions on the nanoparticle plasmon resonance.

The optical properties of metals arise both from optical excitation of interband transitions and their collective electronic, or plasmon, response. Here, we examine the optical properties of Cu, whose strong interband transitions dominate its optical response in the visible region of the spectrum, in a nanoshell geometry. This nanostructure permits the geometrical tuning of the nanoparticle plasmon energy relative to the onset of interband transitions in the metal. Spectral overlap of the interband transitions of Cu with the nanoshell plasmon resonance results in a striking double-peaked plasmon resonance, a unique phenomenon previously unobserved in other noble or coinage metal nanostructures.

Controlled texturing modifies the surface topography and plasmonic properties of Au nanoshells.

We report a facile and controllable method for the postfabrication texturing of the surface topography of Au nanoshells based on site-selective chemical etching of the polycrystalline Au nanoshell surface by a bifunctional alkanethiol molecule, cysteamine. This nanoscale surface texturing process systematically introduces dramatic changes to the plasmonic properties of the Au nanoshells. The modification of the plasmon resonant properties of nanoshells as a function of increased surface roughness was examined experimentally and modeled theoretically using three-dimensional finite difference time domain (FDTD) simulations.

Facile chemical approach to ZnO submicrometer particles with controllable morphologies.

We have developed a simple wet-chemistry approach to fabricating ZnO submicrometer particles with unique morphologies including rings, bowls, hemispheres, and disks. The size and morphology of the particles can be conveniently tailored by varying the concentrations of the zinc precursor. The reaction temperature, pH, and concentration of ammonia are also found to play critical roles in directing the formation of these particle morphologies. These submicrometer particles exhibit strong white-light emission upon UV excitation as a result of the presence of surface defect states resulting from the fabrication method and synthesis conditions.

Plasmonic enhancement of molecular fluorescence.

Metallic nanoparticles are known to dramatically modify the spontaneous emission of nearby fluorescent molecules and materials. Here we examine the role of the nanoparticle plasmon resonance energy and nanoparticle scattering cross section on the fluorescence enhancement of adjacent indocyanine green (ICG) dye molecules. We find that enhancement of the molecular fluorescence by more than a factor of 50 can be achieved for ICG next to a nanoparticle with a large scattering cross section and a plasmon resonance frequency corresponding to the emission frequency of the molecule.

Peptide-assembled optically responsive nanoparticle complexes.

The design of active nanostructures whose form and properties can be modulated by remote means is an important challenge in nanoscience. Here we report two types of active nanoparticle complexes, with properties controlled by near-infrared illumination, resulting from the assembly of photothermally responsive plasmonic nanoparticles with thermally labile biomolecular linkers. Au nanoshells (NS) and quantum dots (QD) are assembled using coiled-coil peptides into NS-NS and NS-QD complexes. Illumination of the NS-NS complexes results in reversible disassembly reassembly, while illumination of NS-QD complexes results in a large, reproducible modulation of the quantum dot fluorescence without disassembly of the nanoparticle-peptide complex.

Mesoscopic nanoshells: geometry-dependent plasmon resonances beyond the quasistatic limit.

The plasmon response of a spherical metallic shell becomes significantly more complex as its size is increased beyond the quasistatic limit. With increasing size and decreasing aspect ratio (r1/r2), higher order multipolar modes contribute in a more dominant manner, and two distinct core-shell geometries exist that provide the same dipole plasmon resonance, with differing relative multipolar contributions in their overall spectral response. With further increase in particle size, the geometric tunability of the core-shell structure disappears, and in the infinite radius limit the plasmon response is consistent with that of a thin metallic film.

Metal nanoshells.

Metal nanoshells are a new class of nanoparticles with highly tunable optical properties. Metal nanoshells consist of a dielectric core nanoparticle such as silica surrounded by an ultrathin metal shell, often composed of gold for biomedical applications. Depending on the size and composition of each layer of the nanoshell, particles can be designed to either absorb or scatter light over much of the visible and infrared regions of the electromagnetic spectrum, including the near infrared region where penetration of light through tissue is maximal. These particles are also effective substrates for surface-enhanced Raman scattering (SERS) and are easily conjugated to antibodies and other biomolecules. One can envision a myriad of potential applications of such tunable particles. Several potential biomedical applications are under development, including immunoassays, modulated drug delivery, photothermal cancer therapy, and imaging contrast agents.