Data-Trace Types for Distributed Stream Processing Systems.

Distributed architectures for efficient processing of streaming data are increasingly critical to modern information processing systems. The goal of this paper is to develop type-based programming abstractions that facilitate correct and efficient deployment of a logical specification of the desired computation on such architectures. In the proposed model, each communication link has an associated type specifying tagged data items along with a dependency relation over tags that captures the logical partial ordering constraints over data items. The semantics of a (distributed) stream processing system is then a function from input data traces to output data traces, where a data trace is an equivalence class of sequences of data items induced by the dependency relation. This data-trace transduction model generalizes both acyclic synchronous data-flow and relational query processors, and can specify computations over data streams with a rich variety of partial ordering and synchronization characteristics. We then describe a set of programming templates for data-trace transductions: abstractions corresponding to common stream processing tasks. Our system automatically maps these high-level programs to a given topology on the distributed implementation platform Apache Storm while preserving the semantics. Our experimental evaluation shows that (1) while automatic parallelization deployed by existing systems may not preserve semantics, particularly when the computation is sensitive to the ordering of data items, our programming abstractions allow a natural specification of the query that contains a mix of ordering constraints while guaranteeing correct deployment, and (2) the throughput of the automatically compiled distributed code is comparable to that of hand-crafted distributed implementations.

The iPlant Collaborative: Cyberinfrastructure for Plant Biology.

The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF) funded project that aims to create an innovative, comprehensive, and foundational cyberinfrastructure in support of plant biology research (PSCIC, 2006). iPlant is developing cyberinfrastructure that uniquely enables scientists throughout the diverse fields that comprise plant biology to address Grand Challenges in new ways, to stimulate and facilitate cross-disciplinary research, to promote biology and computer science research interactions, and to train the next generation of scientists on the use of cyberinfrastructure in research and education. Meeting humanity's projected demands for agricultural and forest products and the expectation that natural ecosystems be managed sustainably will require synergies from the application of information technologies. The iPlant cyberinfrastructure design is based on an unprecedented period of research community input, and leverages developments in high-performance computing, data storage, and cyberinfrastructure for the physical sciences. iPlant is an open-source project with application programming interfaces that allow the community to extend the infrastructure to meet its needs. iPlant is sponsoring community-driven workshops addressing specific scientific questions via analysis tool integration and hypothesis testing. These workshops teach researchers how to add bioinformatics tools and/or datasets into the iPlant cyberinfrastructure enabling plant scientists to perform complex analyses on large datasets without the need to master the command-line or high-performance computational services.