Detalhe da pesquisa
1.
NeuronMotif: Deciphering cis-regulatory codes by layer-wise demixing of deep neural networks.
Proc Natl Acad Sci U S A
; 120(15): e2216698120, 2023 04 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-37023129
2.
GPro: generative AI-empowered toolkit for promoter design.
Bioinformatics
; 40(3)2024 Mar 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-38429953
3.
The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence.
Genome Res
; 31(7): 1121-1135, 2021 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-34140314
4.
ARIC: accurate and robust inference of cell type proportions from bulk gene expression or DNA methylation data.
Brief Bioinform
; 23(1)2022 01 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-34472588
5.
Evaluating methylation of human ribosomal DNA at each CpG site reveals its utility for cancer detection using cell-free DNA.
Brief Bioinform
; 23(4)2022 07 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35804466
6.
DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads.
Brief Bioinform
; 22(6)2021 11 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34245239
7.
MeConcord: a new metric to quantitatively characterize DNA methylation heterogeneity across reads and CpG sites.
Bioinformatics
; 38(Suppl 1): i307-i315, 2022 06 24.
Artigo
em Inglês
| MEDLINE | ID: mdl-35758820
8.
Allelic reprogramming of 3D chromatin architecture during early mammalian development.
Nature
; 547(7662): 232-235, 2017 07 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-28703188
9.
OpenAnnotate: a web server to annotate the chromatin accessibility of genomic regions.
Nucleic Acids Res
; 49(W1): W483-W490, 2021 07 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33999180
10.
DeSP: a systematic DNA storage error simulation pipeline.
BMC Bioinformatics
; 23(1): 185, 2022 May 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-35581548
11.
CellTracker: an automated toolbox for single-cell segmentation and tracking of time-lapse microscopy images.
Bioinformatics
; 37(2): 285-287, 2021 Apr 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-33416830
12.
cfDNApipe: a comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data.
Bioinformatics
; 37(22): 4251-4252, 2021 11 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-34042972
13.
Aging-induced IL27Ra signaling impairs hematopoietic stem cells.
Blood
; 136(2): 183-198, 2020 07 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-32305041
14.
YTHDF3 modulates hematopoietic stem cells by recognizing RNA m6A modification on Ccnd1.
Haematologica
; 107(10): 2381-2394, 2022 10 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-35112553
15.
Synthetic promoter design in Escherichia coli based on a deep generative network.
Nucleic Acids Res
; 48(12): 6403-6412, 2020 07 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-32424410
16.
Genome-wide cell-free DNA methylation analyses improve accuracy of non-invasive diagnostic imaging for early-stage breast cancer.
Mol Cancer
; 20(1): 36, 2021 02 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-33608029
17.
Dynamic transcriptome profiling in DNA damage-induced cellular senescence and transient cell-cycle arrest.
Genomics
; 112(2): 1309-1317, 2020 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-31376528
18.
The atypical E2F family member E2F7 couples the p53 and RB pathways during cellular senescence.
Genes Dev
; 26(14): 1546-57, 2012 Jul 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-22802529
19.
ATRX-mediated chromatin association of histone variant macroH2A1 regulates α-globin expression.
Genes Dev
; 26(5): 433-8, 2012 Mar 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-22391447
20.
DEsingle for detecting three types of differential expression in single-cell RNA-seq data.
Bioinformatics
; 34(18): 3223-3224, 2018 09 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-29688277