Pesquisa | BVS Integralidade em Saúde

1.

FAIR Header Reference genome: a TRUSTworthy standard.

Wright, Adam; Wilkinson, Mark D; Mungall, Christopher; Cain, Scott; Richards, Stephen; Sternberg, Paul; Provin, Ellen; Jacobs, Jonathan L; Geib, Scott; Raciti, Daniela; Yook, Karen; Stein, Lincoln; Molik, David C.

Brief Bioinform ; 25(3)2024 Mar 27.

Artigo em Inglês | MEDLINE | ID: mdl-38555475

2.

WormBase: a modern Model Organism Information Resource.

Harris, Todd W; Arnaboldi, Valerio; Cain, Scott; Chan, Juancarlos; Chen, Wen J; Cho, Jaehyoung; Davis, Paul; Gao, Sibyl; Grove, Christian A; Kishore, Ranjana; Lee, Raymond Y N; Muller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael; Raciti, Daniela; Rodgers, Faye H; Russell, Matthew; Schindelman, Gary; Auken, Kimberly V; Wang, Qinghua; Williams, Gary; Wright, Adam J; Yook, Karen; Howe, Kevin L; Schedl, Tim; Stein, Lincoln; Sternberg, Paul W.

Nucleic Acids Res ; 48(D1): D762-D767, 2020 01 08.

Artigo em Inglês | MEDLINE | ID: mdl-31642470

3.

WormBase 2017: molting into a new stage.

Lee, Raymond Y N; Howe, Kevin L; Harris, Todd W; Arnaboldi, Valerio; Cain, Scott; Chan, Juancarlos; Chen, Wen J; Davis, Paul; Gao, Sibyl; Grove, Christian; Kishore, Ranjana; Muller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael; Raciti, Daniela; Rodgers, Faye; Russell, Matt; Schindelman, Gary; Tuli, Mary Ann; Van Auken, Kimberly; Wang, Qinghua; Williams, Gary; Wright, Adam; Yook, Karen; Berriman, Matthew; Kersey, Paul; Schedl, Tim; Stein, Lincoln; Sternberg, Paul W.

Nucleic Acids Res ; 46(D1): D869-D874, 2018 01 04.

Artigo em Inglês | MEDLINE | ID: mdl-29069413

4.

WormBase 2016: expanding to enable helminth genomic research.

Howe, Kevin L; Bolt, Bruce J; Cain, Scott; Chan, Juancarlos; Chen, Wen J; Davis, Paul; Done, James; Down, Thomas; Gao, Sibyl; Grove, Christian; Harris, Todd W; Kishore, Ranjana; Lee, Raymond; Lomax, Jane; Li, Yuling; Muller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael; Raciti, Daniela; Schindelman, Gary; Stanley, Eleanor; Tuli, Mary Ann; Van Auken, Kimberly; Wang, Daniel; Wang, Xiaodong; Williams, Gary; Wright, Adam; Yook, Karen; Berriman, Matthew; Kersey, Paul; Schedl, Tim; Stein, Lincoln; Sternberg, Paul W.

Nucleic Acids Res ; 44(D1): D774-80, 2016 Jan 04.

Artigo em Inglês | MEDLINE | ID: mdl-26578572

5.

WormBase 2014: new views of curated biology.

Harris, Todd W; Baran, Joachim; Bieri, Tamberlyn; Cabunoc, Abigail; Chan, Juancarlos; Chen, Wen J; Davis, Paul; Done, James; Grove, Christian; Howe, Kevin; Kishore, Ranjana; Lee, Raymond; Li, Yuling; Muller, Hans-Michael; Nakamura, Cecilia; Ozersky, Philip; Paulini, Michael; Raciti, Daniela; Schindelman, Gary; Tuli, Mary Ann; Van Auken, Kimberly; Wang, Daniel; Wang, Xiaodong; Williams, Gary; Wong, J D; Yook, Karen; Schedl, Tim; Hodgkin, Jonathan; Berriman, Matthew; Kersey, Paul; Spieth, John; Stein, Lincoln; Sternberg, Paul W.

Nucleic Acids Res ; 42(Database issue): D789-93, 2014 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-24194605

6.

WormBase 2012: more genomes, more data, new website.

Yook, Karen; Harris, Todd W; Bieri, Tamberlyn; Cabunoc, Abigail; Chan, Juancarlos; Chen, Wen J; Davis, Paul; de la Cruz, Norie; Duong, Adrian; Fang, Ruihua; Ganesan, Uma; Grove, Christian; Howe, Kevin; Kadam, Snehalata; Kishore, Ranjana; Lee, Raymond; Li, Yuling; Muller, Hans-Michael; Nakamura, Cecilia; Nash, Bill; Ozersky, Philip; Paulini, Michael; Raciti, Daniela; Rangarajan, Arun; Schindelman, Gary; Shi, Xiaoqi; Schwarz, Erich M; Ann Tuli, Mary; Van Auken, Kimberly; Wang, Daniel; Wang, Xiaodong; Williams, Gary; Hodgkin, Jonathan; Berriman, Matthew; Durbin, Richard; Kersey, Paul; Spieth, John; Stein, Lincoln; Sternberg, Paul W.

Nucleic Acids Res ; 40(Database issue): D735-41, 2012 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-22067452

7.

WormBase 2024: status and transitioning to Alliance infrastructure.

Sternberg, Paul W; Van Auken, Kimberly; Wang, Qinghua; Wright, Adam; Yook, Karen; Zarowiecki, Magdalena; Arnaboldi, Valerio; Becerra, Andrés; Brown, Stephanie; Cain, Scott; Chan, Juancarlos; Chen, Wen J; Cho, Jaehyoung; Davis, Paul; Diamantakis, Stavros; Dyer, Sarah; Grigoriadis, Dionysis; Grove, Christian A; Harris, Todd; Howe, Kevin; Kishore, Ranjana; Lee, Raymond; Longden, Ian; Luypaert, Manuel; Müller, Hans-Michael; Nuin, Paulo; Quinton-Tulloch, Mark; Raciti, Daniela; Schedl, Tim; Schindelman, Gary; Stein, Lincoln.

Genetics ; 227(1)2024 May 07.

Artigo em Inglês | MEDLINE | ID: mdl-38573366

8.

DATA RESOURCES AND ANALYSES FAIR Header Reference genome: A TRUSTworthy standard.

Wright, Adam; Wilkinson, Mark D; Mungall, Chris; Cain, Scott; Richards, Stephen; Sternberg, Paul; Provin, Ellen; Jacobs, Jonathan L; Geib, Scott; Raciti, Daniela; Yook, Karen; Stein, Lincoln; Molik, David C.

bioRxiv ; 2023 Dec 20.

Artigo em Inglês | MEDLINE | ID: mdl-38076838

9.

WormBase: a comprehensive resource for nematode research.

Harris, Todd W; Antoshechkin, Igor; Bieri, Tamberlyn; Blasiar, Darin; Chan, Juancarlos; Chen, Wen J; De La Cruz, Norie; Davis, Paul; Duesbury, Margaret; Fang, Ruihua; Fernandes, Jolene; Han, Michael; Kishore, Ranjana; Lee, Raymond; Müller, Hans-Michael; Nakamura, Cecilia; Ozersky, Philip; Petcherski, Andrei; Rangarajan, Arun; Rogers, Anthony; Schindelman, Gary; Schwarz, Erich M; Tuli, Mary Ann; Van Auken, Kimberly; Wang, Daniel; Wang, Xiaodong; Williams, Gary; Yook, Karen; Durbin, Richard; Stein, Lincoln D; Spieth, John; Sternberg, Paul W.

Nucleic Acids Res ; 38(Database issue): D463-7, 2010 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-19910365

10.

WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans.

Davis, Paul; Zarowiecki, Magdalena; Arnaboldi, Valerio; Becerra, Andrés; Cain, Scott; Chan, Juancarlos; Chen, Wen J; Cho, Jaehyoung; da Veiga Beltrame, Eduardo; Diamantakis, Stavros; Gao, Sibyl; Grigoriadis, Dionysis; Grove, Christian A; Harris, Todd W; Kishore, Ranjana; Le, Tuan; Lee, Raymond Y N; Luypaert, Manuel; Müller, Hans-Michael; Nakamura, Cecilia; Nuin, Paulo; Paulini, Michael; Quinton-Tulloch, Mark; Raciti, Daniela; Rodgers, Faye H; Russell, Matthew; Schindelman, Gary; Singh, Archana; Stickland, Tim; Van Auken, Kimberly; Wang, Qinghua; Williams, Gary; Wright, Adam J; Yook, Karen; Berriman, Matt; Howe, Kevin L; Schedl, Tim; Stein, Lincoln; Sternberg, Paul W.

Genetics ; 220(4)2022 04 04.

Artigo em Inglês | MEDLINE | ID: mdl-35134929

11.

Worm Phenotype Ontology: integrating phenotype data within and beyond the C. elegans community.

Schindelman, Gary; Fernandes, Jolene S; Bastiani, Carol A; Yook, Karen; Sternberg, Paul W.

BMC Bioinformatics ; 12: 32, 2011 Jan 24.

Artigo em Inglês | MEDLINE | ID: mdl-21261995

12.

Toward an interactive article: integrating journals and biological databases.

Rangarajan, Arun; Schedl, Tim; Yook, Karen; Chan, Juancarlos; Haenel, Stephen; Otis, Lolly; Faelten, Sharon; DePellegrin-Connelly, Tracey; Isaacson, Ruth; Skrzypek, Marek S; Marygold, Steven J; Stefancsik, Raymund; Cherry, J Michael; Sternberg, Paul W; Müller, Hans-Michael.

BMC Bioinformatics ; 12: 175, 2011 May 19.

Artigo em Inglês | MEDLINE | ID: mdl-21595960

13.

WormBase 2007.

Rogers, Anthony; Antoshechkin, Igor; Bieri, Tamberlyn; Blasiar, Darin; Bastiani, Carol; Canaran, Payan; Chan, Juancarlos; Chen, Wen J; Davis, Paul; Fernandes, Jolene; Fiedler, Tristan J; Han, Michael; Harris, Todd W; Kishore, Ranjana; Lee, Raymond; McKay, Sheldon; Müller, Hans-Michael; Nakamura, Cecilia; Ozersky, Philip; Petcherski, Andrei; Schindelman, Gary; Schwarz, Erich M; Spooner, Will; Tuli, Mary Ann; Van Auken, Kimberly; Wang, Daniel; Wang, Xiaodong; Williams, Gary; Yook, Karen; Durbin, Richard; Stein, Lincoln D; Spieth, John; Sternberg, Paul W.

Nucleic Acids Res ; 36(Database issue): D612-7, 2008 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-17991679

14.

Mos1 mutagenesis reveals a diversity of mechanisms affecting response of Caenorhabditis elegans to the bacterial pathogen Microbacterium nematophilum.

Yook, Karen; Hodgkin, Jonathan.

Genetics ; 175(2): 681-97, 2007 Feb.

Artigo em Inglês | MEDLINE | ID: mdl-17151260

15.

Micropublication: incentivizing community curation and placing unpublished data into the public domain.

Raciti, Daniela; Yook, Karen; Harris, Todd W; Schedl, Tim; Sternberg, Paul W.

Database (Oxford) ; 20182018 01 01.

Artigo em Inglês | MEDLINE | ID: mdl-29688367

16.

Multiple genes affect sensitivity of Caenorhabditis elegans to the bacterial pathogen Microbacterium nematophilum.

Gravato-Nobre, Maria J; Nicholas, Hannah R; Nijland, Reindert; O'Rourke, Delia; Whittington, Deborah E; Yook, Karen J; Hodgkin, Jonathan.

Genetics ; 171(3): 1033-45, 2005 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-16079230

17.

Genome characterization, analysis of virulence and transformation of Microbacterium nematophilum, a coryneform pathogen of the nematode Caenorhabditis elegans.

Akimkina, Tatiana; Yook, Karen; Curnock, Steve; Hodgkin, Jonathan.

FEMS Microbiol Lett ; 264(2): 145-51, 2006 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-17010162

18.

WormBase: Annotating many nematode genomes.

Howe, Kevin; Davis, Paul; Paulini, Michael; Tuli, Mary Ann; Williams, Gary; Yook, Karen; Durbin, Richard; Kersey, Paul; Sternberg, Paul W.

Worm ; 1(1): 15-21, 2012 Jan 01.

Artigo em Inglês | MEDLINE | ID: mdl-24058818

19.

Complementation.

Yook, Karen.

WormBook ; : 1-17, 2005 Oct 06.

Artigo em Inglês | MEDLINE | ID: mdl-18023121

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