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1.
Nature ; 586(7831): 790-795, 2020 10.
Artigo em Inglês | MEDLINE | ID: mdl-32788725

RESUMO

Serine, glycine and other nonessential amino acids are critical for tumour progression, and strategies to limit their availability are emerging as potential therapies for cancer1-3. However, the molecular mechanisms driving this response remain unclear and the effects on lipid metabolism are relatively unexplored. Serine palmitoyltransferase (SPT) catalyses the de novo biosynthesis of sphingolipids but also produces noncanonical 1-deoxysphingolipids when using alanine as a substrate4,5. Deoxysphingolipids accumulate in the context of mutations in SPTLC1 or SPTLC26,7-or in conditions of low serine availability8,9-to drive neuropathy, and deoxysphinganine has previously been investigated as an anti-cancer agent10. Here we exploit amino acid metabolism and the promiscuity of SPT to modulate the endogenous synthesis of toxic deoxysphingolipids and slow tumour progression. Anchorage-independent growth reprogrammes a metabolic network involving serine, alanine and pyruvate that drives the endogenous synthesis and accumulation of deoxysphingolipids. Targeting the mitochondrial pyruvate carrier promotes alanine oxidation to mitigate deoxysphingolipid synthesis and improve spheroid growth, similar to phenotypes observed with the direct inhibition of SPT or ceramide synthesis. Restriction of dietary serine and glycine potently induces the accumulation of deoxysphingolipids while decreasing tumour growth in xenograft models in mice. Pharmacological inhibition of SPT rescues xenograft growth in mice fed diets restricted in serine and glycine, and the reduction of circulating serine by inhibition of phosphoglycerate dehydrogenase (PHGDH) leads to the accumulation of deoxysphingolipids and mitigates tumour growth. The promiscuity of SPT therefore links serine and mitochondrial alanine metabolism to membrane lipid diversity, which further sensitizes tumours to metabolic stress.


Assuntos
Neoplasias/metabolismo , Neoplasias/patologia , Serina/deficiência , Esfingolipídeos/química , Esfingolipídeos/metabolismo , Alanina/biossíntese , Alanina/metabolismo , Alanina/farmacologia , Animais , Adesão Celular/efeitos dos fármacos , Divisão Celular/efeitos dos fármacos , Dieta , Feminino , Glicina/biossíntese , Glicina/deficiência , Glicina/metabolismo , Glicina/farmacologia , Células HCT116 , Humanos , Lipídeos de Membrana/química , Lipídeos de Membrana/metabolismo , Camundongos , Mitocôndrias/metabolismo , Neoplasias/tratamento farmacológico , Fosfoglicerato Desidrogenase/antagonistas & inibidores , Fosfoglicerato Desidrogenase/metabolismo , Ácido Pirúvico/metabolismo , Serina/sangue , Serina/farmacologia , Serina C-Palmitoiltransferase/antagonistas & inibidores , Serina C-Palmitoiltransferase/metabolismo , Esferoides Celulares/patologia , Esfingolipídeos/biossíntese , Estresse Fisiológico/efeitos dos fármacos , Ensaios Antitumorais Modelo de Xenoenxerto
2.
Plant J ; 105(3): 580-599, 2021 02.
Artigo em Inglês | MEDLINE | ID: mdl-33119149

RESUMO

Floral nectar is a sugary solution produced by nectaries to attract and reward pollinators. Nectar metabolites, such as sugars, are synthesized within the nectary during secretion from both pre-stored and direct phloem-derived precursors. In addition to sugars, nectars contain nitrogenous compounds such as amino acids; however, little is known about the role(s) of nitrogen (N) compounds in nectary function. In this study, we investigated N metabolism in Cucurbita pepo (squash) floral nectaries in order to understand how various N-containing compounds are produced and determine the role of N metabolism in nectar secretion. The expression and activity of key enzymes involved in primary N assimilation, including nitrate reductase (NR) and alanine aminotransferase (AlaAT), were induced during secretion in C. pepo nectaries. Alanine (Ala) accumulated to about 35% of total amino acids in nectaries and nectar during peak secretion; however, alteration of vascular nitrate supply had no impact on Ala accumulation during secretion, suggesting that nectar(y) amino acids are produced by precursors other than nitrate. In addition, nitric oxide (NO) is produced from nitrate and nitrite, at least partially by NR, in nectaries and nectar. Hypoxia-related processes are induced in nectaries during secretion, including lactic acid and ethanolic fermentation. Finally, treatments that alter nitrate supply affect levels of hypoxic metabolites, nectar volume and nectar sugar composition. The induction of N metabolism in C. pepo nectaries thus plays an important role in the synthesis and secretion of nectar sugar.


Assuntos
Alanina/biossíntese , Cucurbita/metabolismo , Óxido Nítrico/metabolismo , Néctar de Plantas/metabolismo , Alanina Transaminase/genética , Alanina Transaminase/metabolismo , Aminoácidos/metabolismo , Cucurbita/efeitos dos fármacos , Cucurbita/fisiologia , Flores/metabolismo , Regulação da Expressão Gênica de Plantas , Hipóxia , Nitrato Redutase/genética , Nitrato Redutase/metabolismo , Nitratos/metabolismo , Nitratos/farmacologia , Nitrogênio/metabolismo , Néctar de Plantas/química , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Estresse Fisiológico/fisiologia , Açúcares/metabolismo
3.
Mol Microbiol ; 113(2): 326-337, 2020 02.
Artigo em Inglês | MEDLINE | ID: mdl-31696567

RESUMO

Lantibiotics are lanthionine ring containing natural products that belong to the class of ribosomally synthesized and posttranslationally modified peptides (RiPPs). Recent expansion in the availability of microbial genome data and in silico analysis tools have accelerated the discovery of these promising alternatives to antibiotics. Following the genome-mining approach, a biosynthetic gene cluster for a putative two-component lantibiotic, roseocin, was identified in the genome of an Actinomycete, Streptomyces roseosporus NRRL 11379. Posttranslationally modified lanthipeptides of this cluster were obtained by heterologous expression of the genes in Escherichia coli, and were in vitro reconstituted to their bioactive form by exploiting commercial proteases like endoproteinase GluC, and proteinase K. The two peptides displayed synergistic antimicrobial activity against Gram-positive bacteria including the WHO high-priority pathogens, MRSA and VRE. Structural characterization confirmed the installation of four (methyl)lanthionine rings with an indispensable disulfide bond in the α-peptide, and six (methyl)lanthionine rings in the ß-peptide, by a single promiscuous lanthionine synthetase, RosM. Roseocin is the first two-component lantibiotic from a non-Firmicute, with extensive lanthionine bridging.


Assuntos
Alanina/análogos & derivados , Bacteriocinas , Streptomyces , Sulfetos , Actinobacteria/genética , Alanina/biossíntese , Alanina/química , Alanina/genética , Alanina/isolamento & purificação , Antibacterianos/biossíntese , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Bacteriocinas/biossíntese , Bacteriocinas/química , Bacteriocinas/genética , Bacteriocinas/isolamento & purificação , Escherichia coli/genética , Genoma Bacteriano , Família Multigênica , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Streptomyces/genética , Streptomyces/metabolismo , Sulfetos/química , Sulfetos/isolamento & purificação
4.
Chem Res Toxicol ; 34(6): 1655-1663, 2021 06 21.
Artigo em Inglês | MEDLINE | ID: mdl-34077192

RESUMO

Experimental studies have indicated that electrophilic mercury forms (e.g., methylmercury, MeHg+) can accelerate the breakage of selenocysteine in vitro. Particularly, in 2009, Khan et al. (Environ. Toxicol. Chem. 2009, 28, 1567-1577) proposed a mechanism for the degradation of a free methylmercury selenocysteinate complex that was theoretically supported by Asaduzzaman et al. (Inorg. Chem. 2010, 50, 2366-2372). However, little is known about the fate of methylmercury selenocysteinate complexes embedded in an enzyme, especially in conditions of oxidative stress in which methylmercury target enzymes operate. Here, an accurate computational study on molecular models (level of theory: COSMO-ZORA-BLYP-D3(BJ)/TZ2P) was carried out to investigate the formation of dehydroalanine (Dha) in selenoenzymes, which irreversibly impairs their function. Methylselenocysteine as well as methylcysteine and methyltellurocysteine were included to gain insight on the peculiar behavior of selenium. Dha forms in a two-step process, i.e., the oxidation of the chalcogen nucleus followed by a syn-elimination leading to the alkene and the chalcogenic acid. The effect of an excess of hydrogen peroxide, which may lead to the formation of chalcogenones before the elimination, and of MeHg+, a severe toxicant targeting selenoproteins, which leads to the formation of methylmercury selenocysteinate, are also studied with the aim of assessing whether these pathological conditions facilitate the formation of Dha. Indeed, elimination occurs after chalcogen oxidation and MeHg+ facilitates the process. These results indicate a possible mechanism of toxicity of MeHg+ in selenoproteins.


Assuntos
Alanina/análogos & derivados , Teoria da Densidade Funcional , Compostos de Metilmercúrio/metabolismo , Selenoproteínas/metabolismo , Alanina/biossíntese , Alanina/química , Compostos de Metilmercúrio/química , Modelos Moleculares , Estrutura Molecular
5.
Amino Acids ; 53(6): 801-812, 2021 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-33950299

RESUMO

Plants catalyze the biosynthesis of a large number of non-protein amino acids, which are usually toxic for other organisms. In this review, the chemistry and metabolism of N-heterocyclic non-protein amino acids from plants are described. These N-heterocyclic non-protein amino acids are composed of ß-substituted alanines and include mimosine, ß-pyrazol-1-yl-L-alanine, willardiine, isowillardiine, and lathyrine. These ß-substituted alanines consisted of an N-heterocyclic moiety and an alanyl side chain. This review explains how these individual moieties are derived from their precursors and how they are used as the substrate for biosynthesizing the respective N-heterocyclic non-protein amino acids. In addition, known catabolism and possible role of these non-protein amino acids in the actual host is explained.


Assuntos
Alanina/análogos & derivados , Diamino Aminoácidos/biossíntese , Plantas/metabolismo , Uracila/biossíntese , Alanina/biossíntese
6.
J Appl Microbiol ; 128(2): 473-490, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31633851

RESUMO

AIM: Lanthionine or methyllanthionine-containing lanthipeptides belongs to ribosomally synthesized and post-translationally modified peptides (RiPPs) family. Recent revolution in sequencing has made available huge genome sequence dataset of micro-organisms. In this study, we performed genome mining of the complete and partial genome sequences of 479 bacteria of the genus Paenibacillus to determine the diversity and distribution of lanthipeptide gene clusters. METHODS AND RESULTS: All genome sequences were annotated by RAST and subsequently analysed by BAGEL and antiSMASH. A total of 221 lanthipeptide gene clusters were identified in 127 strains of the genus Paenibacillus. One hundred and fifty gene clusters were found associated with the production of class I lanthipeptides while 58 and 13 gene clusters were related to class II and class IV lanthipeptide production respectively. Frequency of strains whose genomes encode putative lanthipeptide precursors was 26·5%. CONCLUSIONS: The results of lanthionine synthetases analysis suggested that diversity of lanthipeptides is much more than anticipated, while lanthionine synthetases must have been co-evolved among various species of the genus Paenibacillus. SIGNIFICANCE AND IMPACT OF THE STUDY: This is the first report showing diversity and distribution of different classes of lanthipeptides among various species of the genus Paenibacillus. This study also reveals the novel lanthipeptide sequences which may be further developed as potential antimicrobials for therapeutic applications.


Assuntos
Alanina/análogos & derivados , Proteínas de Bactérias/genética , Genoma Bacteriano , Ligases/genética , Paenibacillus/enzimologia , Peptídeos/metabolismo , Alanina/biossíntese , Alanina/química , Proteínas de Bactérias/metabolismo , Ligases/metabolismo , Família Multigênica , Paenibacillus/classificação , Paenibacillus/genética , Paenibacillus/metabolismo , Peptídeos/química , Sulfetos/química
7.
J Ind Microbiol Biotechnol ; 47(6-7): 485-495, 2020 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-32535763

RESUMO

L-Leucine is an essential amino acid that has wide and expanding applications in the industry. It is currently fast-growing market demand that provides a powerful impetus to further increase its bioconversion productivity and production stability. In this study, we rationally engineered the metabolic flux from pyruvate to L-leucine synthesis in Corynebacterium glutamicum to enhance both pyruvate availability and L-leucine synthesis. First, the pyc (encoding pyruvate carboxylase) and avtA (encoding alanine-valine aminotransferase) genes were deleted to weaken the metabolic flux of the tricarboxylic acid cycle and reduce the competitive consumption of pyruvate. Next, the transcriptional level of the alaT gene (encoding alanine aminotransferase) was down regulated by inserting a terminator to balance L-leucine production and cell growth. Subsequently, the genes involved in L-leucine biosynthesis were overexpressed by replacing the native promoters PleuA and PilvBNC of the leuA gene and ilvBNC operon, respectively, with the promoter Ptuf of eftu (encoding elongation factor Tu) and using a shuttle expression vector. The resulting strain WL-14 produced 28.47 ± 0.36 g/L L-leucine in shake flask fermentation.


Assuntos
Carbono/metabolismo , Corynebacterium glutamicum/metabolismo , Leucina/biossíntese , Alanina/biossíntese , Ciclo do Ácido Cítrico , Corynebacterium glutamicum/genética , Fermentação , Microbiologia Industrial , Engenharia Metabólica , Plasmídeos/metabolismo , Ácido Pirúvico/metabolismo , Transaminases/metabolismo , Valina/biossíntese
8.
Angew Chem Int Ed Engl ; 59(10): 3881-3885, 2020 03 02.
Artigo em Inglês | MEDLINE | ID: mdl-31823464

RESUMO

The formation of a N-N bond is a unique biochemical transformation, and nature employs diverse biosynthetic strategies to activate nitrogen for bond formation. Among molecules that contain a N-N bond, biosynthetic routes to diazeniumdiolates remain enigmatic. We here report the biosynthetic pathway for the diazeniumdiolate-containing amino acid l-alanosine. Our work reveals that the two nitrogen atoms in the diazeniumdiolate of l-alanosine arise from glutamic acid and aspartic acid, and we clarify the early steps of the biosynthetic pathway by using both in vitro and in vivo approaches. Our work demonstrates a peptidyl-carrier-protein-based mechanism for activation of the precursor l-diaminopropionate, and we also show that nitric oxide can participate in non-enzymatic diazeniumdiolate formation. Furthermore, we demonstrate that the gene alnA, which encodes a fusion protein with an N-terminal cupin domain and a C-terminal AraC-like DNA-binding domain, is required for alanosine biosynthesis.


Assuntos
Alanina/análogos & derivados , Alanina/biossíntese , Alanina/química , Alanina/genética , Ácido Aspártico/química , Ácido Aspártico/metabolismo , Ácido Glutâmico/química , Ácido Glutâmico/metabolismo , Estrutura Molecular , Família Multigênica , Streptomyces/genética , Streptomyces/metabolismo
9.
Angew Chem Int Ed Engl ; 59(6): 2289-2293, 2020 02 03.
Artigo em Inglês | MEDLINE | ID: mdl-31773819

RESUMO

Chemical synthesis of amino acids directly from biomass feedstock is rare. Reported here is a one-step protocol to convert crude glycerol, from the biodiesel industry, into 43 % alanine over a Ru1 Ni7 /MgO catalyst. The multifunctional catalytic system promotes glycerol conversion into lactic acid, and then into alanine. X-ray absorption spectroscopy and scanning transmission electron microscopy revealed the existence of bimetallic RuNi species, whereas density-functional theory calculations suggested Ni-doped Ru substantially decreased the Ea of C-H bond dissociation of lactate alkoxide to form pyruvate, which is the rate-determining step. The catalytic route established in this work creates new opportunities for glycerol utilization and enriches the substrate scope of renewable feedstock to access value-added amino acids.


Assuntos
Alanina/biossíntese , Glicerol/metabolismo , Amônia/química , Biocombustíveis , Catálise , Complexos de Coordenação/química , Teoria da Densidade Funcional , Glicerol/química , Ácido Láctico/química , Níquel/química , Rutênio/química , Espectroscopia por Absorção de Raios X
10.
Biochemistry ; 58(34): 3592-3603, 2019 08 27.
Artigo em Inglês | MEDLINE | ID: mdl-31398016

RESUMO

Fusobacterium nucleatum is a common oral bacterium and a major producer of H2S, a toxic gas linked to the pathogenesis of periodontal disease. The bacterium encodes a fold type II pyridoxal l-phosphate (PLP)-dependent enzyme, Fn1220 or lanthionine synthase (LS), that generates H2S and l-lanthionine (a component of the peptidoglycan layer) through ß-replacement of l-cysteine by a second molecule of l-cysteine. Herein, we show through detailed kinetic analysis that LS elicits catalytic promiscuity as demonstrated for other fold type II PLP-dependent homologues, namely, O-acetylserine sulfhydrylase (OASS) and cystathionine ß-synthase (CBS). Like OASS, LS can assimilate H2S by catalyzing the ß-replacement of O-acetyl-l-serine by sulfide to form l-cysteine. However, the turnover for this reaction in LS is slower than that of other studied OASS enzymes due to slower conversion to the α-aminoacrylate intermediate. Similar to yeast and human CBS, LS can generate H2S and l-cystathionine through ß-replacement of l-cysteine by a second molecule of l-homocysteine; however, whereas this is the main H2S-forming reaction in CBS, it is not for LS. LS shows a marked preference for forming H2S and l-lanthionine through the condensation of 2 equiv of l-cysteine. Sequence alignment of LS with other CBS and OASS enzymes and inspection of the LS crystal structure in the external aldimine state with l-lanthionine reveal that LS possesses a unique loop that engages in hydrogen-bond contact with the product, providing a structural rationale for the enzyme's catalytic preference for H2S and l-lanthionine biosynthesis.


Assuntos
Alanina/análogos & derivados , Cisteína/metabolismo , Fusobacterium nucleatum/enzimologia , Hidroliases/metabolismo , Complexos Multienzimáticos/metabolismo , Alanina/biossíntese , Proteínas de Bactérias/metabolismo , Cistationina beta-Sintase , Cisteína Sintase , Fusobacterium nucleatum/metabolismo , Humanos , Sulfeto de Hidrogênio/metabolismo , Cinética , Conformação Proteica , Fosfato de Piridoxal , Relação Estrutura-Atividade , Sulfetos , Leveduras/enzimologia
11.
Org Biomol Chem ; 17(4): 822-829, 2019 01 23.
Artigo em Inglês | MEDLINE | ID: mdl-30608108

RESUMO

The C-terminal domain of the dehydrophos biosynthetic enzyme DhpH (DhpH-C) catalyzes the condensation of Leu-tRNALeu with (R)-1-aminoethylphosphonate, the aminophosphonate analog of alanine called Ala(P). The product of this reaction, Leu-Ala(P), is a phosphonodipeptide, a class of compounds that have previously been investigated for use as clinical antibiotics. In this study, we show that DhpH-C is highly substrate tolerant and can condense various aminophosphonates (Gly(P), Ser(P), Val(P), 1-amino-propylphosphonate, and phenylglycine(P)) to Leu. Moreover, the enzyme is also tolerant with respect to the amino acid attached to tRNALeu. Using a mutant of leucyl tRNA synthetase that is deficient in its proofreading ability allowed the preparation of a series of aminoacyl-tRNALeu derivatives (Ile, Ala, Val, Met, norvaline, and norleucine). DhpH-C accepted these aminoacyl-tRNA derivatives and condensed the amino acid with l-Ala(P) to form the corresponding phosphonodipeptides. A subset of these peptides displayed antimicrobial activities demonstrating that the enzyme is a versatile biocatalyst for the preparation of antimicrobial peptides. We also investigated another enzyme from the dehydrophos biosynthetic pathway, the 2-oxoglutarate dependent enzyme DhpA. This enzyme oxidizes 2-hydroxyethylphosphonate to 1,2-dihydroxyethylphosphonate en route to l-Ala(P), but longer incubation results in overoxidation to 1-oxo-2-hydroxyethylphosphonate. This α-ketophosphonate was converted by the pyridoxal phosphate dependent enzyme DhpD into l-Ser(P). Thus, the dehydrophos biosynthetic enzymes can generate not only l-Ala(P) but also l-Ser(P).


Assuntos
Alanina/análogos & derivados , Antibacterianos/biossíntese , Leucina-tRNA Ligase/metabolismo , Alanina/biossíntese , Alanina/química , Antibacterianos/química , Biocatálise , Conformação Molecular , Streptomyces/enzimologia
12.
Chembiochem ; 19(3): 256-262, 2018 02 02.
Artigo em Inglês | MEDLINE | ID: mdl-29193538

RESUMO

The ast gene cluster (GenBank accession numbers KF813023.1 and KP284551) was characterized to be responsible for the biosynthesis of ansatrienins in Streptomyces sp. XZQH13, which contains astC, astF1, and astF2 genes involved in the assembly of the N-cyclohexanoyl d-alanyl side chain and the hydroxylation of C-19, respectively. Further to investigating the biosynthetic mechanism of ansatrienins, herein we constructed the mutant strains XZQH13OEΔastF2 and XZQH13OEΔastCΔastF2. Three new ansatrienin analogues, namely, ansatrienols I-K (1-3), along with trienomycinol (4) and 3-O-demethyltrienomycinol (5), were isolated from the XZQH13OEΔastCΔastF2 strain, and trienomycin A (6) and trienomycin G (7) were isolated from the XZQH13OEΔastF2 strain. Their structures were determined by a combination of high-resolution MS (ESI) and 1D and 2D NMR spectroscopy. Accordingly, a pathway for the biosynthesis of these new ansatrienins was proposed.


Assuntos
Alanina/análogos & derivados , Aminofenóis/metabolismo , Compostos Bicíclicos Heterocíclicos com Pontes/metabolismo , Policetídeos/metabolismo , Streptomyces/química , Alanina/biossíntese , Alanina/química , Alanina/isolamento & purificação , Aminofenóis/química , Aminofenóis/isolamento & purificação , Compostos Bicíclicos Heterocíclicos com Pontes/química , Compostos Bicíclicos Heterocíclicos com Pontes/isolamento & purificação , Espectroscopia de Ressonância Magnética , Conformação Molecular , Policetídeos/química , Policetídeos/isolamento & purificação , Estereoisomerismo , Streptomyces/metabolismo
13.
Angew Chem Int Ed Engl ; 57(20): 5645-5649, 2018 05 14.
Artigo em Inglês | MEDLINE | ID: mdl-29527788

RESUMO

We report a general and novel semisynthetic strategy for the preparation of ubiquitinated protein-activity-based probes on the basis of sequential dehydroalanine formation on expressed proteins. We applied this approach to construct a physiologically and therapeutically relevant ubiquitinated α-globin probe, which was used for the enrichment and proteomic identification of α-globin-modulating deubiquitinases. We found USP15 as a potential deubiquitinase for the modulation of α-globin, an excess of which aggravates ß-thalassemia symptoms. This development opens new opportunities for activity-based-probe design to shed light on the important aspects underlying ubiquitination and deubiquitination in health and disease.


Assuntos
Alanina/análogos & derivados , Enzimas Desubiquitinantes/metabolismo , Sondas Moleculares/metabolismo , alfa-Globinas/metabolismo , Alanina/biossíntese , Alanina/química , Enzimas Desubiquitinantes/química , Humanos , Sondas Moleculares/química , Estrutura Molecular , alfa-Globinas/química
14.
J Proteome Res ; 16(3): 1270-1279, 2017 03 03.
Artigo em Inglês | MEDLINE | ID: mdl-28121156

RESUMO

In mycobacteria, d-alanine is an essential precursor for peptidoglycan biosynthesis. The only confirmed enzymatic pathway to form d-alanine is through the racemization of l-alanine by alanine racemase (Alr, EC 5.1.1.1). Nevertheless, the essentiality of Alr in Mycobacterium tuberculosis and Mycobacterium smegmatis for cell survivability in the absence of d-alanine has been a point of controversy with contradictory results reported in the literature. To address this issue, we examined the effects of alr inactivation on the cellular metabolism of M. smegmatis. The M. smegmatis alr insertion mutant TAM23 exhibited essentially identical growth to wild-type mc2155 in the absence of d-alanine. NMR metabolomics revealed drastically distinct phenotypes between mc2155 and TAM23. A metabolic switch was observed for TAM23 as a function of supplemented d-alanine. In the absence of d-alanine, the metabolic response directed carbon through an unidentified transaminase to provide the essential d-alanine required for survival. The process is reversed when d-alanine is available, in which the d-alanine is directed to peptidoglycan biosynthesis. Our results provide further support for the hypothesis that Alr is not an essential function of M. smegmatis and that specific Alr inhibitors will have no bactericidal action.


Assuntos
Alanina/biossíntese , Redes e Vias Metabólicas , Mycobacterium smegmatis/metabolismo , Alanina/metabolismo , Alanina Racemase/metabolismo , Proteínas de Bactérias/metabolismo , Mutação , Mycobacterium smegmatis/genética , Peptidoglicano/biossíntese , Transaminases/metabolismo
15.
Chembiochem ; 17(3): 218-23, 2016 Feb 02.
Artigo em Inglês | MEDLINE | ID: mdl-26630235

RESUMO

Dehydroalanines in goadsporin are proposed to be formed by GodF and GodG, which show slight homology to the N-terminal glutamylation and C-terminal elimination domains, respectively, of LanB, a class I lanthipeptide dehydratase. Although similar, separated-type LanBs are conserved among thiopeptides and indispensable for their biosynthesis and biological activities, these enzymes had not yet been characterized. Here, we identified goadsporin B, which has unmodified Ser4 and Ser14, from both godF and godG disruptants. The godG disruptant also produced goadsporin C, a glutamylated-Ser4 variant of goadsporin B. These results suggested that dehydroalanines are formed by glutamylation and glutamate elimination. NMR analysis revealed for the first time that the glutamyl group was attached to a serine via an ester bond, by the catalysis of LanB-type enzymes. Our findings provide insights into the function of separated-type LanBs involved in the biosynthesis of goadsporin and thiopeptides.


Assuntos
Alanina/análogos & derivados , Peptídeos/metabolismo , Actinobacteria/metabolismo , Alanina/biossíntese , Alanina/química , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Cromatografia Líquida de Alta Pressão , Hidroliases/química , Hidroliases/metabolismo , Peptídeos e Proteínas de Sinalização Intercelular , Família Multigênica , Ressonância Magnética Nuclear Biomolecular , Peptídeos/química , Estrutura Terciária de Proteína , Espectrometria de Massas por Ionização por Electrospray , Streptomyces/genética , Streptomyces/metabolismo
16.
J Am Chem Soc ; 137(30): 9575-8, 2015 Aug 05.
Artigo em Inglês | MEDLINE | ID: mdl-26200899

RESUMO

Dehydroalanine (Dha) is a nonproteinogenic electrophilic amino acid that is a synthetic intermediate or product in the biosynthesis of several bioactive cyclic peptides such as lantibiotics, thiopeptides, and microcystins. Dha also enables labeling of proteins and synthesis of post-translationally modified proteins and their analogues. However, current chemical approaches to introducing Dha into peptides have substantial limitations. Using in vitro selection, here we show that DNA can catalyze Zn(2+) or Zn(2+)/Mn(2+)-dependent formation of Dha from phosphoserine (pSer), i.e., exhibit pSer lyase activity, a fundamentally new DNA-catalyzed reaction. Two new pSer lyase deoxyribozymes, named Dha-forming deoxyribozymes 1 and 2 (DhaDz1 and DhaDz2), each function with multiple turnover on the model hexapeptide substrate that was used during selection. Using DhaDz1, we generated Dha from pSer within an unrelated linear 13-mer peptide. Subsequent base-promoted intramolecular cyclization of homocysteine into Dha formed a stable cystathionine (thioether) analogue of the complement inhibitor compstatin. These findings establish the fundamental catalytic ability of DNA to eliminate phosphate from pSer to form Dha and suggest that with further development, pSer lyase deoxyribozymes will have broad practical utility for site-specific enzymatic synthesis of Dha from pSer in peptide substrates.


Assuntos
ATP Citrato (pro-S)-Liase/metabolismo , Alanina/análogos & derivados , Biocatálise , DNA Catalítico/metabolismo , Peptídeos/química , Peptídeos/metabolismo , ATP Citrato (pro-S)-Liase/química , Alanina/biossíntese , Alanina/química , Ciclização , DNA Catalítico/química
17.
J Nutr ; 144(10): 1501-8, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25165392

RESUMO

BACKGROUND: Pyridoxal 5'-phosphate (PLP) functions as a coenzyme in many cellular processes including one-carbon metabolism and the interconversion and catabolism of amino acids. PLP-dependent enzymes, cystathionine ß-synthase and cystathionine γ-lyase, function in transsulfuration but also have been implicated in the production of the endogenous gaseous signaling molecule hydrogen sulfide (H2S) concurrent with the formation of the biomarkers lanthionine and homolanthionine. OBJECTIVE: Our objective was to determine if H2S production and concurrent biomarker production is affected by vitamin B-6 restriction in a cell culture model. METHODS: We used cultured human hepatoma cells and evaluated static intracellular profiles of amino acids and in vivo kinetics of H2S biomarker formation. Cells were cultured for 6 wk in media containing concentrations of pyridoxal that represented severe vitamin B-6 deficiency (15 nmol/L pyridoxal), marginal deficiency (56 nmol/L pyridoxal), adequacy (210 nmol/L pyridoxal), and standard medium formulation providing a supraphysiologic pyridoxal concentration (1800 nmol/L pyridoxal). RESULTS: Intracellular concentrations of lanthionine and homolanthionine in cells cultured at 15 nmol/L pyridoxal were 50% lower (P < 0.002) and 47% lower (P < 0.0255), respectively, than observed in cells cultured at 1800 nmol/L pyridoxal. Extracellular homocysteine and cysteine were 58% and 46% higher, respectively, in severely deficient cells than in adequate cells (P < 0.002). Fractional synthesis rates of lanthionine (P < 0.01) and homolanthionine (P < 0.006) were lower at 15 and 56 nmol/L pyridoxal than at both higher pyridoxal concentrations. The rate of homocysteine remethylation and the fractional rate of homocysteine production from methionine were not affected by vitamin B-6 restriction. In vitro studies of cell lysates using direct measurement of H2S also had a reduced extent of H2S production in the 2 lower vitamin B-6 conditions. CONCLUSION: In view of the physiologic roles of H2S, these results suggest a mechanism that may be involved in the association between human vitamin B-6 inadequacy and its effects on human health.


Assuntos
Biomarcadores/metabolismo , Sulfeto de Hidrogênio/metabolismo , Deficiência de Vitamina B 6/fisiopatologia , Vitamina B 6/farmacologia , Alanina/análogos & derivados , Alanina/biossíntese , Carcinoma Hepatocelular/metabolismo , Cisteína/biossíntese , Células Hep G2 , Homocisteína/biossíntese , Humanos , Sulfeto de Hidrogênio/antagonistas & inibidores , Modelos Lineares , Neoplasias Hepáticas/metabolismo , Fosfato de Piridoxal/metabolismo , Sulfetos
18.
Molecules ; 19(1): 1004-22, 2014 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-24434673

RESUMO

In this paper, we present a novel, "single experiment" methodology based on genetic engineering of metabolic pathways for direct intracellular production of non-canonical amino acids from simple precursors, coupled with expanded genetic code. In particular, we engineered the intracellular biosynthesis of L-azidohomoalanine from O-acetyl-L-homoserine and NaN3, and achieved its direct incorporation into recombinant target proteins by AUG codon reassignment in a methionine-auxotroph E. coli strain. In our system, the host's methionine biosynthetic pathway was first diverted towards the production of the desired non-canonical amino acid by exploiting the broad reaction specificity of recombinant pyridoxal phosphate-dependent O-acetylhomoserine sulfhydrylase from Corynebacterium glutamicum. Then, the expression of the target protein barstar, accompanied with efficient L-azidohomoalanine incorporation in place of L-methionine, was accomplished. This work stands as proof-of-principle and paves the way for additional work towards intracellular production and site-specific incorporation of biotechnologically relevant non-canonical amino acids directly from common fermentable sources.


Assuntos
Alanina/análogos & derivados , Proteínas de Bactérias/biossíntese , Alanina/biossíntese , Química Click , Escherichia coli , Fermentação , Engenharia Genética , Redes e Vias Metabólicas , Processamento de Proteína Pós-Traducional , Proteínas Recombinantes/biossíntese , Espectrometria de Massas por Ionização por Electrospray
19.
Biochim Biophys Acta ; 1820(2): 84-9, 2012 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-22146232

RESUMO

BACKGROUND: Sertoli cells metabolize glucose producing lactate for developing germ cells. As insulin regulates glucose uptake and its disturbance/insensitivity is associated with diabetes mellitus, we aimed to determine the effect of insulin deprivation in human Sertoli cell (hSC) metabolism and metabolism-associated gene expression. METHODS: hSC-enriched primary cultures were maintained in the absence/presence of insulin and metabolite variations were determined by (1)H-NMR. mRNA expression levels of glucose transporters (GLUT1, GLUT3), lactate dehydrogenase (LDHA) and monocarboxylate transporter (MCT4) were determined by RT-PCR. RESULTS: Insulin deprivation resulted in decreased lactate production and in decrease of glucose consumption that was completely reverted after 6h. Cells of both groups consumed similar amounts of glucose. In insulin-deprived cells, transcript levels of genes associated to lactate metabolism (LDHA and MCT4) were decreased. Transcript levels of genes involved in glucose uptake exhibited a divergent variation: GLUT3 levels were decreased while GLUT1 levels increased. Insulin-deprived hSCs presented: 1) altered glucose consumption and lactate secretion; 2) altered expression of metabolism-associated genes involved in lactate production and export; 3) an adaptation of glucose uptake by modulating the expression of GLUT1 and GLUT3. GENERAL SIGNIFICANCE: This is the first report regarding the effect of insulin-deprivation on hSC metabolism.


Assuntos
Regulação da Expressão Gênica , Insulina/deficiência , Células de Sertoli/metabolismo , Alanina/biossíntese , Células Cultivadas , Regulação da Expressão Gênica/efeitos dos fármacos , Glucose/metabolismo , Transportador de Glucose Tipo 3/genética , Transportador de Glucose Tipo 3/metabolismo , Humanos , Insulina/farmacologia , L-Lactato Desidrogenase/genética , L-Lactato Desidrogenase/metabolismo , Ácido Láctico/biossíntese , Masculino , Transportadores de Ácidos Monocarboxílicos/genética , Transportadores de Ácidos Monocarboxílicos/metabolismo , Proteínas Musculares/genética , Proteínas Musculares/metabolismo , Piruvatos/metabolismo , RNA Mensageiro/genética , RNA Mensageiro/metabolismo , Células de Sertoli/enzimologia
20.
Appl Environ Microbiol ; 79(21): 6670-6, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23974138

RESUMO

The filamentous mold Aspergillus fumigatus causes invasive aspergillosis, a potentially life-threatening infectious disease, in humans. The sidE gene encodes a bimodular peptide synthetase and was shown previously to be strongly upregulated during initiation of murine lung infection. In this study, we characterized the two adenylation domains of SidE with the ATP-[(32)P]pyrophosphate exchange assay in vitro, which identified fumarate and l-alanine, respectively, as the preferred substrates. Using full-length holo-SidE, fumarylalanine (FA) formation was observed in vitro. Furthermore, FA was identified in A. fumigatus culture supernatants under inducing conditions, unless sidE was genetically inactivated. As FA is structurally related to established pharmaceutical products exerting immunomodulatory activity, this work may contribute to our understanding of the virulence of A. fumigatus.


Assuntos
Alanina/biossíntese , Aspergillus fumigatus/enzimologia , Aspergillus fumigatus/patogenicidade , Fumaratos/metabolismo , Peptídeo Sintases/metabolismo , Filogenia , Alanina/metabolismo , Sequência de Bases , Northern Blotting , Escherichia coli , Teste de Complementação Genética , Dados de Sequência Molecular , Peptídeo Sintases/genética , Plasmídeos/genética , Alinhamento de Sequência , Virulência
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