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1.
J Biol Chem ; 296: 100155, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33273017

RESUMO

Serine active-site ß-lactamases hydrolyze ß-lactam antibiotics through the formation of a covalent acyl-enzyme intermediate followed by deacylation via an activated water molecule. Carbapenem antibiotics are poorly hydrolyzed by most ß-lactamases owing to slow hydrolysis of the acyl-enzyme intermediate. However, the emergence of the KPC-2 carbapenemase has resulted in widespread resistance to these drugs, suggesting it operates more efficiently. Here, we investigated the unusual features of KPC-2 that enable this resistance. We show that KPC-2 has a 20,000-fold increased deacylation rate compared with the common TEM-1 ß-lactamase. Furthermore, kinetic analysis of active site alanine mutants indicates that carbapenem hydrolysis is a concerted effort involving multiple residues. Substitution of Asn170 greatly decreases the deacylation rate, but this residue is conserved in both KPC-2 and non-carbapenemase ß-lactamases, suggesting it promotes carbapenem hydrolysis only in the context of KPC-2. X-ray structure determination of the N170A enzyme in complex with hydrolyzed imipenem suggests Asn170 may prevent the inactivation of the deacylating water by the 6α-hydroxyethyl substituent of carbapenems. In addition, the Thr235 residue, which interacts with the C3 carboxylate of carbapenems, also contributes strongly to the deacylation reaction. In contrast, mutation of the Arg220 and Thr237 residues decreases the acylation rate and, paradoxically, improves binding affinity for carbapenems. Thus, the role of these residues may be ground state destabilization of the enzyme-substrate complex or, alternatively, to ensure proper alignment of the substrate with key catalytic residues to facilitate acylation. These findings suggest modifications of the carbapenem scaffold to avoid hydrolysis by KPC-2 ß-lactamase.


Assuntos
Antibacterianos/química , Escherichia coli/enzimologia , Imipenem/química , Klebsiella pneumoniae/enzimologia , beta-Lactamases/química , Acilação , Ampicilina/química , Ampicilina/metabolismo , Ampicilina/farmacologia , Antibacterianos/metabolismo , Antibacterianos/farmacologia , Sítios de Ligação , Cefalotina/química , Cefalotina/metabolismo , Cefalotina/farmacologia , Clonagem Molecular , Cristalografia por Raios X , Escherichia coli/genética , Expressão Gênica , Vetores Genéticos/química , Vetores Genéticos/metabolismo , Imipenem/metabolismo , Imipenem/farmacologia , Cinética , Klebsiella pneumoniae/genética , Meropeném/química , Meropeném/metabolismo , Meropeném/farmacologia , Modelos Moleculares , Mutação , Ligação Proteica , Conformação Proteica em alfa-Hélice , Conformação Proteica em Folha beta , Domínios e Motivos de Interação entre Proteínas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Especificidade por Substrato , Termodinâmica , Resistência beta-Lactâmica/genética , beta-Lactamases/genética , beta-Lactamases/metabolismo
2.
Artigo em Inglês | MEDLINE | ID: mdl-30782990

RESUMO

In 2016, we identified a new class A carbapenemase, VCC-1, in a nontoxigenic Vibrio cholerae strain that had been isolated from retail shrimp imported into Canada for human consumption. Shortly thereafter, seven additional VCC-1-producing V. cholerae isolates were recovered along the German coastline. These isolates appear to have acquired the VCC-1 gene (blaVCC-1) independently from the Canadian isolate, suggesting that blaVCC-1 is mobile and widely distributed. VCC-1 hydrolyzes penicillins, cephalothin, aztreonam, and carbapenems and, like the broadly disseminated class A carbapenemase KPC-2, is only weakly inhibited by clavulanic acid or tazobactam. Although VCC-1 has yet to be observed in the clinic, its encroachment into aquaculture and other areas with human activity suggests that the enzyme may be emerging as a public health threat. To preemptively address this threat, we examined the structural and functional biology of VCC-1 against the FDA-approved non-ß-lactam-based inhibitor avibactam. We found that avibactam restored the in vitro sensitivity of V. cholerae to meropenem, imipenem, and ertapenem. The acylation efficiency was lower for VCC-1 than for KPC-2 and akin to that of Pseudomonas aeruginosa PAO1 AmpC (k2/Ki = 3.0 × 103 M-1 s-1). The tertiary structure of VCC-1 is similar to that of KPC-2, and they bind avibactam similarly; however, our analyses suggest that VCC-1 may be unable to degrade avibactam, as has been found for KPC-2. Based on our prior genomics-based surveillance, we were able to target VCC-1 for detailed molecular studies to gain early insights that could be used to combat this carbapenemase in the future.


Assuntos
Compostos Azabicíclicos/farmacologia , Proteínas de Bactérias/antagonistas & inibidores , Carbapenêmicos/farmacologia , Vibrio cholerae/efeitos dos fármacos , Inibidores de beta-Lactamases/farmacologia , Aztreonam/metabolismo , Carbapenêmicos/metabolismo , Cefalotina/metabolismo , Humanos , Testes de Sensibilidade Microbiana , Penicilinas/metabolismo , Alimentos Marinhos/microbiologia , Vibrio cholerae/genética , Vibrio cholerae/isolamento & purificação , beta-Lactamases
3.
Antimicrob Agents Chemother ; 59(12): 7811-4, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26369975
4.
Proteins ; 81(11): 2045-51, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23737193

RESUMO

EstU1 is a unique family VIII carboxylesterase that displays hydrolytic activity toward the amide bond of clinically used ß-lactam antibiotics as well as the ester bond of p-nitrophenyl esters. EstU1 assumes a ß-lactamase-like modular architecture and contains the residues Ser100, Lys103, and Tyr218, which correspond to the three catalytic residues (Ser64, Lys67, and Tyr150, respectively) of class C ß-lactamases. The structure of the EstU1/cephalothin complex demonstrates that the active site of EstU1 is not ideally tailored to perform an efficient deacylation reaction during the hydrolysis of ß-lactam antibiotics. This result explains the weak ß-lactamase activity of EstU1 compared with class C ß-lactamases. Finally, structural and sequential comparison of EstU1 with other family VIII carboxylesterases elucidates an operative molecular strategy used by family VIII carboxylesterases to extend their substrate spectrum.


Assuntos
Carboxilesterase/química , Carboxilesterase/metabolismo , beta-Lactamases/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Cefalotina/metabolismo , Ligação Proteica , Estrutura Secundária de Proteína , beta-Lactamases/química
5.
J Am Chem Soc ; 135(39): 14679-90, 2013 Oct 02.
Artigo em Inglês | MEDLINE | ID: mdl-24010547

RESUMO

Bacteria that cause most of the hospital-acquired infections make use of class C ß-lactamase (CBL) among other enzymes to resist a wide spectrum of modern antibiotics and pose a major public health concern. Other than the general features, details of the defensive mechanism by CBL, leading to the hydrolysis of drug molecules, remain a matter of debate, in particular the identification of the general base and role of the active site residues and substrate. In an attempt to unravel the detailed molecular mechanism, we carried out extensive hybrid quantum mechanical/molecular mechanical Car-Parrinello molecular dynamics simulation of the reaction with the aid of the metadynamics technique. On this basis, we report here the mechanism of the formation of the acyl-enzyme complex from the Henry-Michaelis complex formed by ß-lactam antibiotics and CBL. We considered two ß-lactam antibiotics, namely, cephalothin and aztreonam, belonging to two different subfamilies. A general mechanism for the formation of a ß-lactam antibiotic-CBL acyl-enzyme complex is elicited, and the individual roles of the active site residues and substrate are probed. The general base in the acylation step has been identified as Lys67, while Tyr150 aids the protonation of the ß-lactam nitrogen through either the substrate carboxylate group or a water molecule.


Assuntos
Antibacterianos/metabolismo , Aztreonam/metabolismo , Cefalotina/metabolismo , Citrobacter freundii/enzimologia , beta-Lactamases/metabolismo , Antibacterianos/química , Aztreonam/química , Domínio Catalítico , Cefalotina/química , Citrobacter freundii/química , Citrobacter freundii/metabolismo , Modelos Moleculares , beta-Lactamases/química
6.
J Bacteriol ; 194(15): 4089-96, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22636785

RESUMO

Acinetobacter species show high levels of intrinsic resistance to many antibiotics. The major protein species in the outer membrane of Acinetobacter baumannii does not belong to the high-permeability trimeric porin family, which includes Escherichia coli OmpF/OmpC, and instead is a close homolog of E. coli OmpA and Pseudomonas aeruginosa OprF. We characterized the pore-forming function of this OmpA homolog, OmpA(Ab), by a reconstitution assay. OmpA(Ab) produced very low pore-forming activity, about 70-fold lower than that of OmpF and an activity similar to that of E. coli OmpA and P. aeruginosa OprF. The pore size of the OmpA(Ab) channel was similar to that of OprF, i.e., about 2 nm in diameter. The low permeability of OmpA(Ab) is not due to the inactivation of this protein during purification, because the permeability of the whole A. baumannii outer membrane was also very low. Furthermore, the outer membrane permeability to cephalothin and cephaloridine, measured in intact cells, was about 100-fold lower than that of E. coli K-12. The permeability of cephalothin and cephaloridine in A. baumannii was decreased 2- to 3-fold when the ompA(Ab) gene was deleted. These results show that OmpA(Ab) is the major nonspecific channel in A. baumannii. The low permeability of this porin, together with the presence of constitutive ß-lactamases and multidrug efflux pumps, such as AdeABC and AdeIJK, appears to be essential for the high levels of intrinsic resistance to a number of antibiotics.


Assuntos
Acinetobacter baumannii/genética , Acinetobacter baumannii/metabolismo , Proteínas da Membrana Bacteriana Externa/genética , Proteínas da Membrana Bacteriana Externa/metabolismo , Porinas/genética , Porinas/metabolismo , Antibacterianos/metabolismo , Permeabilidade da Membrana Celular , Cefaloridina/metabolismo , Cefalotina/metabolismo , Deleção de Genes
7.
Proc Natl Acad Sci U S A ; 106(14): 5854-8, 2009 Apr 07.
Artigo em Inglês | MEDLINE | ID: mdl-19307562

RESUMO

Multidrug efflux transporters, especially those that belong to the resistance-nodulation-division (RND) family, often show very broad substrate specificity and play a major role both in the intrinsic antibiotic resistance and, with increased levels of expression, in the elevated resistance of Gram-negative bacteria. However, it has not been possible to determine the kinetic behavior of these important pumps so far. This is partly because these pumps form a tripartite complex traversing both the cytoplasmic and outer membranes, with an outer membrane channel and a periplasmic adaptor protein, and it is uncertain if the behavior of an isolated component protein reflects that of the protein in this multiprotein complex. Here we use intact cells of Escherichia coli containing the intact multiprotein complex AcrB-AcrA-TolC, and measure the kinetic constants for various cephalosporins, by assessing the periplasmic concentration of the drug from their rate of hydrolysis by periplasmic beta-lactamase and the rate of efflux as the difference between the influx rate and the hydrolysis rate. Nitrocefin efflux showed a K(m) of about 5 microM with little sign of cooperativity. For other compounds (cephalothin, cefamandole, and cephaloridine) that showed lower affinity to the pump, however, kinetics showed strong positive cooperativity, which is consistent with the rotating catalysis model of this trimeric pump. For the very hydrophilic cefazolin there was little sign of efflux.


Assuntos
Proteínas da Membrana Bacteriana Externa/metabolismo , Proteínas de Escherichia coli/metabolismo , Lipoproteínas/metabolismo , Proteínas de Membrana Transportadoras/metabolismo , Proteínas Associadas à Resistência a Múltiplos Medicamentos/metabolismo , Complexos Multiproteicos/metabolismo , Cefamandol/metabolismo , Cefazolina/metabolismo , Cefaloridina/metabolismo , Cefalosporinas/metabolismo , Cefalotina/metabolismo , Cinética
8.
Antimicrob Agents Chemother ; 55(3): 1248-55, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21149620

RESUMO

The metallo-ß-lactamase VIM-4, mainly found in Pseudomonas aeruginosa or Acinetobacter baumannii, was produced in Escherichia coli and characterized by biochemical and X-ray techniques. A detailed kinetic study performed in the presence of Zn²+ at concentrations ranging from 0.4 to 100 µM showed that VIM-4 exhibits a kinetic profile similar to the profiles of VIM-2 and VIM-1. However, VIM-4 is more active than VIM-1 against benzylpenicillin, cephalothin, nitrocefin, and imipenem and is less active than VIM-2 against ampicillin and meropenem. The crystal structure of the dizinc form of VIM-4 was solved at 1.9 Å. The sole difference between VIM-4 and VIM-1 is found at residue 228, which is Ser in VIM-1 and Arg in VIM-4. This substitution has a major impact on the VIM-4 catalytic efficiency compared to that of VIM-1. In contrast, the differences between VIM-2 and VIM-4 seem to be due to a different position of the flapping loop and two substitutions in loop 2. Study of the thermal stability and the activity of the holo- and apo-VIM-4 enzymes revealed that Zn²+ ions have a pronounced stabilizing effect on the enzyme and are necessary for preserving the structure.


Assuntos
Antibacterianos/metabolismo , beta-Lactamases/química , beta-Lactamases/metabolismo , Ampicilina/metabolismo , Cefalosporinas/metabolismo , Cefalotina/metabolismo , Cristalografia por Raios X , Escherichia coli/genética , Escherichia coli/metabolismo , Imipenem/metabolismo , Espectroscopia de Ressonância Magnética , Meropeném , Penicilina G/metabolismo , Tienamicinas , beta-Lactamases/genética
9.
J Biol Chem ; 284(48): 33703-12, 2009 Nov 27.
Artigo em Inglês | MEDLINE | ID: mdl-19812041

RESUMO

TEM-1 beta-lactamase is the most common plasmid-encoded beta-lactamase in Gram-negative bacteria and is a model class A enzyme. The active site of class A beta-lactamases share several conserved residues including Ser(70), Glu(166), and Asn(170) that coordinate a hydrolytic water involved in deacylation. Unlike Ser(70) and Glu(166), the functional significance of residue Asn(170) is not well understood even though it forms hydrogen bonds with both Glu(166) and the hydrolytic water. The goal of this study was to examine the importance of Asn(170) for catalysis and substrate specificity of beta-lactam antibiotic hydrolysis. The codon for position 170 was randomized to create a library containing all 20 possible amino acids. The random library was introduced into Escherichia coli, and functional clones were selected on agar plates containing ampicillin. DNA sequencing of the functional clones revealed that only asparagine (wild type) and glycine at this position are consistent with wild-type function. The determination of kinetic parameters for several substrates revealed that the N170G mutant is very efficient at hydrolyzing substrates that contain a primary amine in the antibiotic R-group that would be close to the Asn(170) side chain in the acyl-intermediate. In addition, the x-ray structure of the N170G enzyme indicated that the position of an active site water important for deacylation is altered compared with the wild-type enzyme. Taken together, the results suggest the N170G TEM-1 enzyme hydrolyzes ampicillin efficiently because of substrate-assisted catalysis where the primary amine of the ampicillin R-group positions the hydrolytic water and allows for efficient deacylation.


Assuntos
Substituição de Aminoácidos , Mutação , beta-Lactamases/genética , beta-Lactamases/metabolismo , Sequência de Aminoácidos , Ampicilina/farmacologia , Antibacterianos/farmacologia , Asparagina/química , Asparagina/genética , Asparagina/metabolismo , Catálise , Domínio Catalítico/genética , Cefalexina/química , Cefalexina/metabolismo , Cefalotina/química , Cefalotina/metabolismo , Cristalografia por Raios X , Escherichia coli/efeitos dos fármacos , Escherichia coli/genética , Escherichia coli/metabolismo , Ácido Glutâmico/química , Ácido Glutâmico/genética , Ácido Glutâmico/metabolismo , Cinética , Testes de Sensibilidade Microbiana , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Molecular , Mutagênese Sítio-Dirigida , Estrutura Terciária de Proteína , Homologia de Sequência de Aminoácidos , Relação Estrutura-Atividade , Especificidade por Substrato , beta-Lactamases/química
10.
Antimicrob Agents Chemother ; 53(10): 4320-6, 2009 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-19651915

RESUMO

The genus Chryseobacterium and other genera belonging to the family Flavobacteriaceae include organisms that can behave as human pathogens and are known to cause different kinds of infections. Several species of Flavobacteriaceae, including Chryseobacterium indologenes, are naturally resistant to beta-lactam antibiotics (including carbapenems), due to the production of a resident metallo-beta-lactamase. Although C. indologenes presently constitutes a limited clinical threat, the incidence of infections caused by this organism is increasing in some settings, where isolates that exhibit multidrug resistance phenotypes (including resistance to aminoglycosides and quinolones) have been detected. Here, we report the identification and characterization of a new IND-type variant from a C. indologenes isolate from Burkina Faso that is resistant to beta-lactams and aminoglycosides. The levels of sequence identity of the new variant to other IND-type metallo-beta-lactamases range between 72 and 90% (for IND-4 and IND-5, respectively). The purified enzyme exhibited N-terminal heterogeneity and a posttranslational modification consisting of the presence of a pyroglutamate residue at the N terminus. IND-6 shows a broad substrate profile, with overall higher turnover rates than IND-5 and higher activities than IND-2 and IND-5 against ceftazidime and cefepime.


Assuntos
Chryseobacterium/enzimologia , beta-Lactamases/química , Adulto , Sequência de Aminoácidos , Antibacterianos/farmacologia , Cefepima , Ceftazidima/química , Ceftazidima/farmacologia , Cefalexina/química , Cefalexina/metabolismo , Cefalosporinas/química , Cefalosporinas/farmacologia , Cefalotina/química , Cefalotina/metabolismo , Chryseobacterium/efeitos dos fármacos , Chryseobacterium/genética , Chryseobacterium/isolamento & purificação , Feminino , Humanos , Testes de Sensibilidade Microbiana , Dados de Sequência Molecular , Filogenia , Estrutura Secundária de Proteína , Homologia de Sequência de Aminoácidos , beta-Lactamases/classificação , beta-Lactamases/genética , beta-Lactamases/metabolismo
11.
Antimicrob Agents Chemother ; 53(12): 5046-54, 2009 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-19770275

RESUMO

A Swedish patient of Indian origin traveled to New Delhi, India, and acquired a urinary tract infection caused by a carbapenem-resistant Klebsiella pneumoniae strain that typed to the sequence type 14 complex. The isolate, Klebsiella pneumoniae 05-506, was shown to possess a metallo-beta-lactamase (MBL) but was negative for previously known MBL genes. Gene libraries and amplification of class 1 integrons revealed three resistance-conferring regions; the first contained bla(CMY-4) flanked by ISEcP1 and blc. The second region of 4.8 kb contained a complex class 1 integron with the gene cassettes arr-2, a new erythromycin esterase gene; ereC; aadA1; and cmlA7. An intact ISCR1 element was shown to be downstream from the qac/sul genes. The third region consisted of a new MBL gene, designated bla(NDM-1), flanked on one side by K. pneumoniae DNA and a truncated IS26 element on its other side. The last two regions lie adjacent to one another, and all three regions are found on a 180-kb region that is easily transferable to recipient strains and that confers resistance to all antibiotics except fluoroquinolones and colistin. NDM-1 shares very little identity with other MBLs, with the most similar MBLs being VIM-1/VIM-2, with which it has only 32.4% identity. As well as possessing unique residues near the active site, NDM-1 also has an additional insert between positions 162 and 166 not present in other MBLs. NDM-1 has a molecular mass of 28 kDa, is monomeric, and can hydrolyze all beta-lactams except aztreonam. Compared to VIM-2, NDM-1 displays tighter binding to most cephalosporins, in particular, cefuroxime, cefotaxime, and cephalothin (cefalotin), and also to the penicillins. NDM-1 does not bind to the carbapenems as tightly as IMP-1 or VIM-2 and turns over the carbapenems at a rate similar to that of VIM-2. In addition to K. pneumoniae 05-506, bla(NDM-1) was found on a 140-kb plasmid in an Escherichia coli strain isolated from the patient's feces, inferring the possibility of in vivo conjugation. The broad resistance carried on these plasmids is a further worrying development for India, which already has high levels of antibiotic resistance.


Assuntos
Hidrolases de Éster Carboxílico/química , Hidrolases de Éster Carboxílico/genética , Infecções por Klebsiella/microbiologia , Klebsiella pneumoniae/enzimologia , Klebsiella pneumoniae/genética , beta-Lactamases/química , beta-Lactamases/genética , Sequência de Aminoácidos , Antibacterianos/metabolismo , Antibacterianos/farmacologia , Hidrolases de Éster Carboxílico/classificação , Cefotaxima/metabolismo , Cefotaxima/farmacologia , Cefuroxima/metabolismo , Cefuroxima/farmacologia , Cefalosporinas/metabolismo , Cefalosporinas/farmacologia , Cefalotina/metabolismo , Cefalotina/farmacologia , Farmacorresistência Bacteriana Múltipla/genética , Farmacorresistência Bacteriana Múltipla/fisiologia , Eletroforese em Gel de Campo Pulsado , Humanos , Índia , Cinética , Klebsiella pneumoniae/efeitos dos fármacos , Testes de Sensibilidade Microbiana , Dados de Sequência Molecular , Penicilinas/metabolismo , Penicilinas/farmacologia , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , beta-Lactamases/classificação
12.
J Antimicrob Chemother ; 61(4): 792-7, 2008 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-18281307

RESUMO

OBJECTIVES: In order to assess whether or not the Arg-276 of CTX-M-type enzymes is equivalent to the Arg-244 of IRT-TEM-derivative enzymes, we replaced the former with six different amino acids, some of them previously described as involved in resistance to beta-lactamase inhibitors in TEM-IRT derivatives. We also investigated the role of Arg276 in cefotaxime hydrolysis. METHODS: By site-directed mutagenesis and by use of the bla(CTX-M-1) gene as template, Arg-276 was replaced with six different amino acids (Trp, His, Cys, Asn, Gly and Ser). MICs of beta-lactams alone and in combination with beta-lactamase inhibitors were established. The seven enzymes (CTX-M-1 wild-type and six derived mutants) were purified by affinity chromatography, and kinetic parameters (k(cat), K(m), k(cat)/K(m)) towards cefalotin and cefotaxime were determined. Clavulanic acid IC(50) values were also assessed with all enzymes. RESULTS: No increase in MICs of beta-lactam/beta-lactamase inhibitor combination was detected with any of the six CTX-M-1-derived mutants, in agreement with the clavulanic acid IC(50) values. The MICs of cefotaxime were clearly lower for the Escherichia coli harbouring the Trp, Cys, Ser and Gly CTX-M-1 mutant enzymes than for CTX-M-1, and these enzymes showed a clearly reduced catalytic efficiency towards cefotaxime. As regards cefalotin, there was a moderate reduction in catalytic efficiency for Cys and His. CONCLUSIONS: Arg-276 in CTX-M-type beta-lactamases is not equivalent to Arg-244 in IRT-type enzymes. Position Arg-276 appears to be important for cefotaxime hydrolysis in CTX-M-type enzymes, although different effects were obtained regarding the replaced amino acid.


Assuntos
Antibacterianos/farmacologia , Farmacorresistência Bacteriana/genética , Inibidores Enzimáticos/farmacologia , Escherichia coli/enzimologia , beta-Lactamases/genética , beta-Lactamases/metabolismo , Substituição de Aminoácidos/genética , Antibacterianos/metabolismo , Cefotaxima/metabolismo , Cefotaxima/farmacologia , Cefalotina/metabolismo , Cefalotina/farmacologia , Cromatografia de Afinidade , Ácido Clavulânico/farmacologia , Escherichia coli/efeitos dos fármacos , Concentração Inibidora 50 , Cinética , Testes de Sensibilidade Microbiana , Modelos Moleculares , Mutagênese Sítio-Dirigida , beta-Lactamases/química , beta-Lactamases/isolamento & purificação
13.
J Chemother ; 19(4): 382-7, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17855181

RESUMO

Seventy-six (75.2%) of 101 Escherichia coli isolates, collected over a 2-month period in 2002 at the Children's Hospital of Tunis (Tunisia), were resistant to at least one beta-lactam. They produced beta-lactamases which were further characterized by spectrophotometry, isoelectric focusing (IEF) and PCR. Seventy-five isolates had a pI 5.4 beta-lactamase and one isolate expressed a pI 5.6 beta-lactamase. These beta-lactamases were active against penicillins and cephalothin. Nineteen of 76 isolates were resistant to ticarcillin-clavulanic acid combination. The bla(TEM) gene was detected in 71 isolates, all expressed a pI 5.4 beta-lactamase that was assumed to be TEM-1 or inhibitor-resistant TEM (IRT). Thirty-eight of 76 isolates showed one weak band on IEF with pIs ranging from 8.2 to >9, suggesting low level expression of the chromosomal AmpC beta-lactamase. Five of 76 isolates produced extended-spectrum beta-lactamases (ESBLs), with a basic pI of 7.9 or 8.7, active on penicillins, extended-spectrum cephalosporins, but not on cefoxitin. bla(SHV) genes were detected in three isolates producing pI 7.9 ESBLs but not in two isolates expressing pI 8.7 ESBLs. These latter showed strong cefotaxime-hydrolyzing activities. Hence, they might be CTX-M-type ESBLs.


Assuntos
Antibacterianos/farmacologia , Proteínas de Bactérias/química , Escherichia coli/efeitos dos fármacos , Resistência beta-Lactâmica , beta-Lactamases/química , beta-Lactamas/farmacologia , Antibacterianos/metabolismo , Proteínas de Bactérias/metabolismo , Cefalotina/metabolismo , Cefalotina/farmacologia , Criança , Escherichia coli/enzimologia , Infecções por Escherichia coli/microbiologia , Humanos , Concentração de Íons de Hidrogênio , Testes de Sensibilidade Microbiana , Penicilinas/metabolismo , Penicilinas/farmacologia , Tunísia , beta-Lactamases/metabolismo , beta-Lactamas/metabolismo
14.
Structure ; 10(3): 413-24, 2002 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-12005439

RESUMO

Beta-lactamases hydrolyze beta-lactam antibiotics and are the leading cause of bacterial resistance to these drugs. Although beta-lactamases have been extensively studied, structures of the substrate-enzyme and product-enzyme complexes have proven elusive. Here, the structure of a mutant AmpC in complex with the beta-lactam cephalothin in its substrate and product forms was determined by X-ray crystallography to 1.53 A resolution. The acyl-enzyme intermediate between AmpC and cephalothin was determined to 2.06 A resolution. The ligand undergoes a dramatic conformational change as the reaction progresses, with the characteristic six-membered dihydrothiazine ring of cephalothin rotating by 109 degrees. These structures correspond to all three intermediates along the reaction path and provide insight into substrate recognition, catalysis, and product expulsion.


Assuntos
Proteínas de Bactérias , Cefalotina/química , Cefalotina/metabolismo , beta-Lactamases/química , beta-Lactamases/metabolismo , Amidas/química , Amidas/metabolismo , Sítios de Ligação , Cefalosporinas/química , Cefalosporinas/metabolismo , Cristalografia por Raios X , Hidrolases/química , Hidrolases/metabolismo , Ligantes , Modelos Moleculares , Estrutura Terciária de Proteína
15.
J Phys Chem B ; 120(10): 2681-90, 2016 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-26918257

RESUMO

Understanding the molecular details of antibiotic resistance by the bacterial enzymes ß-lactamases is vital for the development of novel antibiotics and inhibitors. In this spirit, the detailed mechanism of deacylation of the acyl-enzyme complex formed by cephalothin and class C ß-lactamase is investigated here using hybrid quantum-mechanical/molecular-mechanical molecular dynamics methods. The roles of various active-site residues and substrate in the deacylation reaction are elucidated. We identify the base that activates the hydrolyzing water molecule and the residue that protonates the catalytic serine (Ser64). Conformational changes in the active sites and proton transfers that potentiate the efficiency of the deacylation reaction are presented. We have also characterized the oxyanion holes and other H-bonding interactions that stabilize the reaction intermediates. Together with the kinetic and mechanistic details of the acylation reaction, we analyze the complete mechanism and the overall kinetics of the drug hydrolysis. Finally, the apparent rate-determining step in the drug hydrolysis is scrutinized.


Assuntos
Cefalotina/metabolismo , Simulação de Dinâmica Molecular , beta-Lactamases/metabolismo , Acilação , Cefalotina/química , Ligação de Hidrogênio , Hidrólise , Cinética , Conformação Molecular , beta-Lactamases/química
16.
J Phys Chem B ; 120(35): 9338-46, 2016 09 08.
Artigo em Inglês | MEDLINE | ID: mdl-27501066

RESUMO

A widely applicable free energy contribution analysis (FECA) method based on the quantum mechanical/molecular mechanical (QM/MM) approximation using response kernel approaches has been proposed to investigate the influences of environmental residues and/or atoms in the QM region on the free energy profile. This method can evaluate atomic contributions to the free energy along the reaction path including polarization effects on the QM region within a dramatically reduced computational time. The rate-limiting step in the deactivation of the ß-lactam antibiotic cefalotin (CLS) by ß-lactamase was studied using this method. The experimentally observed activation barrier was successfully reproduced by free energy perturbation calculations along the optimized reaction path that involved activation by the carboxylate moiety in CLS. It was found that the free energy profile in the QM region was slightly higher than the isolated energy and that two residues, Lys67 and Lys315, as well as water molecules deeply influenced the QM atoms associated with the bond alternation reaction in the acyl-enzyme intermediate. These facts suggested that the surrounding residues are favorable for the reactant complex and prevent the intermediate from being too stabilized to proceed to the following deacylation reaction. We have demonstrated that the free energy contribution analysis should be a useful method to investigate enzyme catalysis and to facilitate intelligent molecular design.


Assuntos
Termodinâmica , beta-Lactamases/química , beta-Lactamases/metabolismo , Acilação , Antibacterianos/química , Antibacterianos/metabolismo , Cefalotina/química , Cefalotina/metabolismo , Teoria Quântica
17.
Proteins ; 51(3): 442-52, 2003 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-12696055

RESUMO

Molecular models for the Henry Michaelis complexes of Enterobacter cloacae, a class C beta-lactamase, with penicillin G and cephalotin have been constructed by using molecular mechanic calculations, based on the AMBER force field, to examine the molecular differentiation mechanisms between cephalosporins and penicillins in beta-lactamases. Ser318Ala and Thr316Ala mutations in both complexes and Asn346Ala and Thr316Ala/Asn346Ala double mutation in penicillin G complex have also been studied. Results confirm that Thr316, Ser318, and Asn346 play a crucial role in the substrate recognition, via their interactions with one of the oxygens of the antibiotic carboxyl group. Both mutation Ser318Ala and Thr316Ala strongly affect the correct binding of cephalotin to P99, the first mainly by precluding the discriminating salt bridge between carboxyl and serine OH groups, and the second one by the Ser318, Lys315, and Tyr150 spatial rearrangements. On the other hand, Ser318Ala mutation has little effect on penicillin G binding, but the Thr316Ala/Asn346Ala double mutation causes the departure of the antibiotic from the oxyanion hole. Molecular dynamic simulations allow us to interpret the experimental results of some class C and A beta-lactamases.


Assuntos
Antibacterianos/química , Cefalosporinas/química , Penicilinas/química , beta-Lactamases/química , Substituição de Aminoácidos , Antibacterianos/metabolismo , Sítios de Ligação/genética , Ligação Competitiva , Cefalosporinase/química , Cefalosporinase/metabolismo , Cefalosporinas/metabolismo , Cefalotina/química , Cefalotina/metabolismo , Enterobacter cloacae/enzimologia , Enterobacter cloacae/genética , Modelos Moleculares , Conformação Molecular , Mutação , Penicilina G/química , Penicilina G/metabolismo , Penicilinas/metabolismo , Estrutura Terciária de Proteína/genética , beta-Lactamases/genética , beta-Lactamases/metabolismo
18.
Clin Pharmacol Ther ; 26(1): 54-62, 1979 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-445962

RESUMO

Cephalothin kinetics was studied in 5 patients the day before (PREOP), during (SURG), and the day after (POSTOP) cardiopulmonary bypass surgery. The PREOP (114 ml/min) and SURG (94 ml/min) renal clearances were of the same order but both were less than POSTOP renal clearance (248 ml/min). Cephalothin total body clearance during operation was lower (p less than 0.01) than PREOP or POSTOP clearance, with decreased metabolic clearance the primary cause. There was reduction in cephalothin elimination throughout the surgical procedure, not only in the period of extracorporeal circulation, indicating that general anesthesia had a significant influence on drug disposition. The metabolite deacetylcephalothin was rapidly formed on all 3 days and its kinetic behavior paralleled that of the parent drug.


Assuntos
Ponte Cardiopulmonar , Cefalotina/metabolismo , Adulto , Idoso , Biotransformação , Cromatografia Líquida de Alta Pressão , Feminino , Humanos , Cinética , Masculino , Pessoa de Meia-Idade , Período Pós-Operatório , Fatores de Tempo
19.
Clin Pharmacol Ther ; 20(5): 579-84, 1976 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-975730

RESUMO

Comparative studies of cefamandole and cephalothin were carried out in 32 cancer patients. After rapid intravenous injection of 1 gm cefamandole or cephalothin, the peak mean serum concentrations in 11 patients achieved at 0.25 hr were 103.4 mcg/ml and 56.7 mcg/ml, respectively. Except at 6 hr, the serum concentration of cefamandole was higher (p less than 0.05) at all times. The terminal half-lives (t 1/2) were similar, being 1.2 hr for cefamandole and 1.0 hr for cephalothin. Cefamandole, 1 gm intramuscularly, induced a peak mean serum concentration of 26.6 mcg/ml at 1 hr, with a slow decay. Intermittent cefamandole (2 gm intravenously every 6 hr) induced very high mean serum concentrations (7 patients), but at 4 hr the concentrations were similar to those after 1 gm intravenously. Per cent of urinary excretion was similar for both drugs regardless of dose and mode of administration. Continuous-infusion cefamandole or cephalothin (2 gm loading followed by 2 gm every 6 hr) in 14 patients showed consistently higher serum concentrations for cefamandole (p less than 0.05) over a 5-day period. There was no evidence of drug accumulation in the multiple-dose studies. Both the single- and multiple-dose schedules were well tolerated.


Assuntos
Cefalosporinas/metabolismo , Ácidos Mandélicos/uso terapêutico , Adolescente , Adulto , Idoso , Cefalosporinas/uso terapêutico , Cefalotina/metabolismo , Cefalotina/uso terapêutico , Meia-Vida , Humanos , Infecções/tratamento farmacológico , Ácidos Mandélicos/metabolismo , Pessoa de Meia-Idade , Fatores de Tempo
20.
Clin Pharmacol Ther ; 38(6): 692-6, 1985 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-2998677

RESUMO

We gave intravenous infusions of sulbactam, a beta-lactamase inhibitor, in combination with ampicillin or cephalothin to women 2 days after cesarean section delivery. The elimination t1/2 was 1.0 hours, the volume of distribution at steady state was 268 ml/kg, and renal clearance was 295 ml/min. These values are similar to those in normal young men and in surgical patients and suggest that dose regimens of sulbactam will not need adjustment in the postpartum period. Sulbactam concentrations in breast milk averaged 0.5 micrograms/ml, a value similar to that of several beta-lactam antibiotics.


Assuntos
Leite Humano/análise , Ácido Penicilânico/metabolismo , Ampicilina/metabolismo , Ampicilina/uso terapêutico , Cefalotina/metabolismo , Cefalotina/uso terapêutico , Cromatografia Gasosa , Combinação de Medicamentos , Feminino , Humanos , Infusões Parenterais , Cinética , Masculino , Ácido Penicilânico/sangue , Ácido Penicilânico/uso terapêutico , Período Pós-Operatório , Gravidez , Infecção Puerperal/prevenção & controle , Sulbactam
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