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1.
Nature ; 615(7954): 939-944, 2023 03.
Artigo em Inglês | MEDLINE | ID: mdl-36949205

RESUMO

Vision is initiated by the rhodopsin family of light-sensitive G protein-coupled receptors (GPCRs)1. A photon is absorbed by the 11-cis retinal chromophore of rhodopsin, which isomerizes within 200 femtoseconds to the all-trans conformation2, thereby initiating the cellular signal transduction processes that ultimately lead to vision. However, the intramolecular mechanism by which the photoactivated retinal induces the activation events inside rhodopsin remains experimentally unclear. Here we use ultrafast time-resolved crystallography at room temperature3 to determine how an isomerized twisted all-trans retinal stores the photon energy that is required to initiate the protein conformational changes associated with the formation of the G protein-binding signalling state. The distorted retinal at a 1-ps time delay after photoactivation has pulled away from half of its numerous interactions with its binding pocket, and the excess of the photon energy is released through an anisotropic protein breathing motion in the direction of the extracellular space. Notably, the very early structural motions in the protein side chains of rhodopsin appear in regions that are involved in later stages of the conserved class A GPCR activation mechanism. Our study sheds light on the earliest stages of vision in vertebrates and points to fundamental aspects of the molecular mechanisms of agonist-mediated GPCR activation.


Assuntos
Rodopsina , Visão Ocular , Animais , Sítios de Ligação/efeitos da radiação , Cristalografia , Proteínas Heterotriméricas de Ligação ao GTP/química , Proteínas Heterotriméricas de Ligação ao GTP/metabolismo , Isomerismo , Fótons , Ligação Proteica/efeitos da radiação , Conformação Proteica/efeitos da radiação , Retinaldeído/química , Retinaldeído/metabolismo , Retinaldeído/efeitos da radiação , Rodopsina/química , Rodopsina/metabolismo , Rodopsina/efeitos da radiação , Fatores de Tempo , Visão Ocular/fisiologia , Visão Ocular/efeitos da radiação
2.
Nature ; 558(7711): 595-599, 2018 06.
Artigo em Inglês | MEDLINE | ID: mdl-29925949

RESUMO

Many organisms capture or sense sunlight using rhodopsin pigments1,2, which are integral membrane proteins that bind retinal chromophores. Rhodopsins comprise two distinct protein families 1 , type-1 (microbial rhodopsins) and type-2 (animal rhodopsins). The two families share similar topologies and contain seven transmembrane helices that form a pocket in which retinal is linked covalently as a protonated Schiff base to a lysine at the seventh transmembrane helix2,3. Type-1 and type-2 rhodopsins show little or no sequence similarity to each other, as a consequence of extensive divergence from a common ancestor or convergent evolution of similar structures 1 . Here we report a previously unknown and diverse family of rhodopsins-which we term the heliorhodopsins-that we identified using functional metagenomics and that are distantly related to type-1 rhodopsins. Heliorhodopsins are embedded in the membrane with their N termini facing the cell cytoplasm, an orientation that is opposite to that of type-1 or type-2 rhodopsins. Heliorhodopsins show photocycles that are longer than one second, which is suggestive of light-sensory activity. Heliorhodopsin photocycles accompany retinal isomerization and proton transfer, as in type-1 and type-2 rhodopsins, but protons are never released from the protein, even transiently. Heliorhodopsins are abundant and distributed globally; we detected them in Archaea, Bacteria, Eukarya and their viruses. Our findings reveal a previously unknown family of light-sensing rhodopsins that are widespread in the microbial world.


Assuntos
Metagenômica , Rodopsina/análise , Rodopsina/classificação , Sequência de Aminoácidos , Eucariotos/química , Evolução Molecular , Rodopsina/química , Rodopsina/efeitos da radiação , Rodopsinas Microbianas/análise , Rodopsinas Microbianas/química , Rodopsinas Microbianas/classificação , Rodopsinas Microbianas/efeitos da radiação
3.
Nature ; 521(7550): 48-53, 2015 May 07.
Artigo em Inglês | MEDLINE | ID: mdl-25849775

RESUMO

Krokinobacter eikastus rhodopsin 2 (KR2) is the first light-driven Na(+) pump discovered, and is viewed as a potential next-generation optogenetics tool. Since the positively charged Schiff base proton, located within the ion-conducting pathway of all light-driven ion pumps, was thought to prohibit the transport of a non-proton cation, the discovery of KR2 raised the question of how it achieves Na(+) transport. Here we present crystal structures of KR2 under neutral and acidic conditions, which represent the resting and M-like intermediate states, respectively. Structural and spectroscopic analyses revealed the gating mechanism, whereby the flipping of Asp116 sequesters the Schiff base proton from the conducting pathway to facilitate Na(+) transport. Together with the structure-based engineering of the first light-driven K(+) pumps, electrophysiological assays in mammalian neurons and behavioural assays in a nematode, our studies reveal the molecular basis for light-driven non-proton cation pumps and thus provide a framework that may advance the development of next-generation optogenetics.


Assuntos
Flavobacteriaceae/química , Bombas de Íon/química , Bombas de Íon/efeitos da radiação , Luz , Rodopsina/química , Rodopsina/efeitos da radiação , Sódio/metabolismo , Sítios de Ligação , Cristalografia por Raios X , Concentração de Íons de Hidrogênio , Bombas de Íon/genética , Bombas de Íon/metabolismo , Transporte de Íons/genética , Transporte de Íons/efeitos da radiação , Modelos Biológicos , Modelos Moleculares , Mutagênese/genética , Optogenética , Potássio/metabolismo , Conformação Proteica , Engenharia de Proteínas , Retinaldeído/química , Retinaldeído/metabolismo , Rodopsina/genética , Rodopsina/metabolismo , Bases de Schiff , Relação Estrutura-Atividade
4.
Adv Exp Med Biol ; 1293: 35-53, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33398806

RESUMO

Ion-translocating rhodopsins, especially channelrhodopsins (ChRs), have attracted broad attention as a powerful tool to modulate the membrane potential of cells with light (optogenetics). Because of recent biophysical, spectroscopic, and computational studies, including the structural determination of cation and anion ChRs, our understanding of the molecular mechanism underlying light-gated ion conduction has been greatly advanced. In this chapter, I first describe the background of rhodopsin family proteins including ChR, and how the optogenetics technology has been established from the discovery of first ChR in 2002. I later introduce the recent findings of the structure-function relationship of ChR by comparing the crystal structures of cation and anion ChRs. I further discuss the future goal in the fields of ChR research and optogenetic tool development.


Assuntos
Channelrhodopsins/química , Channelrhodopsins/metabolismo , Optogenética , Rodopsina/química , Rodopsina/metabolismo , Channelrhodopsins/genética , Channelrhodopsins/efeitos da radiação , Luz , Potenciais da Membrana , Optogenética/métodos , Rodopsina/genética , Rodopsina/efeitos da radiação , Relação Estrutura-Atividade
5.
Adv Exp Med Biol ; 1293: 3-19, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33398804

RESUMO

The first light-sensing proteins used in optogenetics were rhodopsins. The word "rhodopsin" originates from the Greek words "rhodo" and "opsis," indicating rose and sight, respectively. Although the classical meaning of rhodopsin is the red-colored pigment in our eyes, the modern meaning of rhodopsin encompasses photoactive proteins containing a retinal chromophore in animals and microbes. Animal and microbial rhodopsins possess 11-cis and all-trans retinal, respectively, to capture light in seven transmembrane α-helices, and photoisomerizations into all-trans and 13-cis forms, respectively, initiate each function. We are able to find ion-transporting proteins in microbial rhodopsins, such as light-gated channels and light-driven pumps, which are the main tools in optogenetics. In this chapter, historical aspects and molecular properties of rhodopsins are introduced. In the first part, "what is rhodopsin?", general introduction of rhodopsin is presented. Then, molecular mechanism of bacteriorodopsin, a light-driven proton pump and the best-studied microbial rhodopsin, is described. In the section of channelrhodopsin, the light-gated ion channel, molecular properties, and several variants are introduced. As the history has proven, understanding the molecular mechanism of microbial rhodopsins is a prerequisite for useful functional design of optogenetics tools in future.


Assuntos
Luz , Rodopsina/metabolismo , Animais , Transporte de Íons/efeitos da radiação , Optogenética/métodos , Rodopsina/genética , Rodopsina/efeitos da radiação , Rodopsinas Microbianas/genética , Rodopsinas Microbianas/metabolismo , Rodopsinas Microbianas/efeitos da radiação
6.
Proc Natl Acad Sci U S A ; 114(13): E2608-E2615, 2017 03 28.
Artigo em Inglês | MEDLINE | ID: mdl-28289214

RESUMO

Vertebrate rhodopsin (Rh) contains 11-cis-retinal as a chromophore to convert light energy into visual signals. On absorption of light, 11-cis-retinal is isomerized to all-trans-retinal, constituting a one-way reaction that activates transducin (Gt) followed by chromophore release. Here we report that bovine Rh, regenerated instead with a six-carbon-ring retinal chromophore featuring a C11=C12 double bond locked in its cis conformation (Rh6mr), employs an atypical isomerization mechanism by converting 11-cis to an 11,13-dicis configuration for prolonged Gt activation. Time-dependent UV-vis spectroscopy, HPLC, and molecular mechanics analyses revealed an atypical thermal reisomerization of the 11,13-dicis to the 11-cis configuration on a slow timescale, which enables Rh6mr to function in a photocyclic manner similar to that of microbial Rhs. With this photocyclic behavior, Rh6mr repeatedly recruits and activates Gt in response to light stimuli, making it an excellent candidate for optogenetic tools based on retinal analog-bound vertebrate Rhs. Overall, these comprehensive structure-function studies unveil a unique photocyclic mechanism of Rh activation by an 11-cis-to-11,13-dicis isomerization.


Assuntos
Rodopsina/química , Animais , Bovinos , Cromatografia Líquida de Alta Pressão , Isomerismo , Processos Fotoquímicos , Rodopsina/fisiologia , Rodopsina/efeitos da radiação
7.
Proc Natl Acad Sci U S A ; 114(16): E3268-E3275, 2017 04 18.
Artigo em Inglês | MEDLINE | ID: mdl-28373559

RESUMO

Conformational equilibria of G-protein-coupled receptors (GPCRs) are intimately involved in intracellular signaling. Here conformational substates of the GPCR rhodopsin are investigated in micelles of dodecyl maltoside (DDM) and in phospholipid nanodiscs by monitoring the spatial positions of transmembrane helices 6 and 7 at the cytoplasmic surface using site-directed spin labeling and double electron-electron resonance spectroscopy. The photoactivated receptor in DDM is dominated by one conformation with weak pH dependence. In nanodiscs, however, an ensemble of pH-dependent conformational substates is observed, even at pH 6.0 where the MIIbH+ form defined by proton uptake and optical spectroscopic methods is reported to be the sole species present in native disk membranes. In nanodiscs, the ensemble of substates in the photoactivated receptor spontaneously decays to that characteristic of the inactive state with a lifetime of ∼16 min at 20 °C. Importantly, transducin binding to the activated receptor selects a subset of the ensemble in which multiple substates are apparently retained. The results indicate that in a native-like lipid environment rhodopsin activation is not analogous to a simple binary switch between two defined conformations, but the activated receptor is in equilibrium between multiple conformers that in principle could recognize different binding partners.


Assuntos
Luz , Nanoestruturas/química , Conformação Proteica/efeitos da radiação , Rodopsina/química , Transducina/química , Animais , Bovinos , Estrutura Secundária de Proteína , Rodopsina/metabolismo , Rodopsina/efeitos da radiação , Marcadores de Spin , Transducina/metabolismo , Transducina/efeitos da radiação
8.
Biophys J ; 116(7): 1248-1258, 2019 04 02.
Artigo em Inglês | MEDLINE | ID: mdl-30902364

RESUMO

Bistable opsins are photopigments expressed in both invertebrates and vertebrates. These light-sensitive G-protein-coupled receptors undergo a reversible reaction upon illumination. A first photon initiates the cis to trans isomerization of the retinal chromophore-attached to the protein through a protonated Schiff base-and a series of transition states that eventually results in the formation of the thermally stable and active Meta state. Excitation by a second photon reverts this process to recover the original ground state. On the other hand, monostable opsins (e.g., bovine rhodopsin) lose their chromophore during the decay of the Meta II state (i.e., they bleach). Spectroscopic studies on the molecular details of the two-photon cycle in bistable opsins are limited. Here, we describe the successful expression and purification of recombinant rhodopsin-1 from the jumping spider Hasarius adansoni (JSR1). In its natural configuration, spectroscopic characterization of JSR1 is hampered by the similar absorption spectra in the visible spectrum of the inactive and active states. We solved this issue by separating their absorption spectra by replacing the endogenous 11-cis retinal chromophore with the blue-shifted 9-cis JSiR1. With this system, we used time-resolved ultraviolet-visible spectroscopy after pulsed laser excitation to obtain kinetic details of the rise and decay of the photocycle intermediates. We also used resonance Raman spectroscopy to elucidate structural changes of the retinal chromophore upon illumination. Our data clearly indicate that the protonated Schiff base is stable throughout the entire photoreaction. We additionally show that the accompanying conformational changes in the protein are different from those of monostable rhodopsin, as recorded by light-induced FTIR difference spectroscopy. Thus, we envisage JSR1 as becoming a model system for future studies on the reaction mechanisms of bistable opsins, e.g., by time-resolved x-ray crystallography.


Assuntos
Proteínas de Insetos/química , Fótons , Rodopsina/química , Absorção de Radiação , Animais , Proteínas de Insetos/efeitos da radiação , Domínios Proteicos , Rodopsina/efeitos da radiação , Bases de Schiff/química , Aranhas , Raios Ultravioleta
9.
J Phys Chem A ; 123(9): 1766-1784, 2019 Mar 07.
Artigo em Inglês | MEDLINE | ID: mdl-30762358

RESUMO

Bacteriorhodopsin (BR) and halorhodopsin (HR) are well-known light-driven ion-pumping rhodopsins. BR transfers a proton from the intracellular medium to the extracellular medium. HR takes in chloride ion from the extracellular medium. A new light-driven sodium ion-pumping rhodopsin was discovered in 2013 by Inoue, Kandori, and co-workers ( Nat. Commun . 2013 , 4 , 1678 ). The purpose of this article is to elucidate the proton, sodium ion and chloride ion transfer mechanisms and the geometrical changes of the intermediates. The absorption maxima of three rhodopsins were calculated by the SAC/SAC-CI method using the QM/MM optimized geometries. For BR, the SAC-CI results supported the previously proposed proton-transfer mechanism; (1) the photoisomerization from all-trans to 13-cis retinal (K intermediate), (2) the relaxation of the retinal structure (L intermediate), (3) the proton transfer from the Schiff base to the counterion residue (ASP85) (M intermediate), (4) the proton transfer from the ASP96 to the Schiff base (N intermediate), and (5) the thermal isomerization from 13-cis to all-trans retinal (O intermediate). The proton releases to the extracellular medium through the ASP96, the Schiff base, the ASP85, and the GLU204 or GLU194 from the intracellular medium. Furthermore, it clarified that the guanidine group rotation of ARG82 changes the excitation energies of the L and N intermediates, but the effect is small for the resting state and the K, M, and O intermediates. The theoretical calculations suggested that the ARG82 rotation occurs in the N intermediate from the comparison between the experimental absorption spectra and the theoretical excitation energies. For the KR2, the Kandori group proposed the sodium ion transfer mechanism; (1) the photoisomerization from all-trans to 13-cis retinal (K intermediate), (2) the relaxation of the retinal structure (L intermediate), (3) the proton transfer from the Schiff base to the counterion residue (ASP116) (M intermediate), (4) the sodium ion passes through the cavity formed by the rotation of the counterion residue (ASP116) (O intermediate) and (5) the proton of the ASP116 reassociates to the Schiff base. The steps (1) to (3) are the same as ones of BR. The SAC-CI results supported the proposed sodium ion transfer mechanism and suggested that the sodium ion transfer proceeds in the O intermediate as follows; (1) the sodium ion connects with the Schiff base in the cavity formed by the ASP116 rotation, (2) at the same time that the sodium ion passes through the Schiff base, the Schiff base forms the hydrogen bond to the proton of ASP116, and (3) at the same time that the sodium ion transfers to the extracellular medium, the proton reassociates with the Schiff base from the ASP116. Furthermore, our results indicated that the retinal is not all-trans but 13-cis when the sodium ion passes through the Schiff base in the O intermediate. For the HR, since the counterion residue is replaced by the THR126, the proton dose not transfer from the Schiff base. Instead, the chloride ion transfers in the opposite direction to the proton of BR and the sodium ion of KR2. The SAC-CI results supported the previously proposed chloride ion transfer mechanism; (1) the photoisomerization from all-trans to 13-cis retinal (K intermediate), (2) the relaxation of the retinal structure (L intermediate), (3) the chloride ion passes through the Schiff base from the extracellular medium side to the intracellular medium side (N intermediate) and (4) the chloride ion transfer from the Schiff base to the intracellular medium and the thermal isomerization from 13-cis to all-trans retinal (O intermediate). Furthermore, our results suggested that the Schiff base forms bonds to the hydroxide ion instead of the chloride ion in the O intermediate. The negative ion is necessary to keep the total charge around the Schiff base in the O intermediate.


Assuntos
Cloretos/química , Teoria da Densidade Funcional , Luz , Prótons , Rodopsina/química , Rodopsina/efeitos da radiação , Sódio/química , Íons/química
10.
Proc Natl Acad Sci U S A ; 113(4): 822-9, 2016 Jan 26.
Artigo em Inglês | MEDLINE | ID: mdl-26699459

RESUMO

The structure-guided design of chloride-conducting channelrhodopsins has illuminated mechanisms underlying ion selectivity of this remarkable family of light-activated ion channels. The first generation of chloride-conducting channelrhodopsins, guided in part by development of a structure-informed electrostatic model for pore selectivity, included both the introduction of amino acids with positively charged side chains into the ion conduction pathway and the removal of residues hypothesized to support negatively charged binding sites for cations. Engineered channels indeed became chloride selective, reversing near -65 mV and enabling a new kind of optogenetic inhibition; however, these first-generation chloride-conducting channels displayed small photocurrents and were not tested for optogenetic inhibition of behavior. Here we report the validation and further development of the channelrhodopsin pore model via crystal structure-guided engineering of next-generation light-activated chloride channels (iC++) and a bistable variant (SwiChR++) with net photocurrents increased more than 15-fold under physiological conditions, reversal potential further decreased by another ∼ 15 mV, inhibition of spiking faithfully tracking chloride gradients and intrinsic cell properties, strong expression in vivo, and the initial microbial opsin channel-inhibitor-based control of freely moving behavior. We further show that inhibition by light-gated chloride channels is mediated mainly by shunting effects, which exert optogenetic control much more efficiently than the hyperpolarization induced by light-activated chloride pumps. The design and functional features of these next-generation chloride-conducting channelrhodopsins provide both chronic and acute timescale tools for reversible optogenetic inhibition, confirm fundamental predictions of the ion selectivity model, and further elucidate electrostatic and steric structure-function relationships of the light-gated pore.


Assuntos
Aprendizagem da Esquiva/fisiologia , Cloretos/metabolismo , Ativação do Canal Iônico/fisiologia , Optogenética , Rodopsina/química , Potenciais de Ação , Sequência de Aminoácidos , Animais , Arginina/química , Aprendizagem da Esquiva/efeitos da radiação , Complexo Nuclear Basolateral da Amígdala/fisiologia , Complexo Nuclear Basolateral da Amígdala/efeitos da radiação , Células Cultivadas , Dependovirus/genética , Eletrochoque , Medo , Tecnologia de Fibra Óptica , Vetores Genéticos/administração & dosagem , Vetores Genéticos/genética , Células HEK293 , Hipocampo/citologia , Histidina/química , Humanos , Concentração de Íons de Hidrogênio , Ativação do Canal Iônico/efeitos da radiação , Masculino , Memória/fisiologia , Memória/efeitos da radiação , Camundongos , Camundongos Endogâmicos C57BL , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Neurônios/fisiologia , Conformação Proteica , Ratos , Ratos Sprague-Dawley , Rodopsina/metabolismo , Rodopsina/efeitos da radiação , Alinhamento de Sequência , Área Tegmentar Ventral/fisiologia
11.
Exp Eye Res ; 170: 51-57, 2018 05.
Artigo em Inglês | MEDLINE | ID: mdl-29454859

RESUMO

The heterotrimeric G-protein binding site on G-protein coupled receptors remains relatively unexplored regarding its potential as a new target of therapeutic intervention or as a secondary site of action by the existing drugs. Tauroursodeoxycholic acid bears structural resemblance to several compounds that were previously identified to specifically bind to the light-activated form of the visual receptor rhodopsin and to inhibit its activation of transducin. We show that TUDCA stabilizes the active form of rhodopsin, metarhodopsin II, and does not display the detergent-like effects of common amphiphilic compounds that share the cholesterol scaffold structure, such as deoxycholic acid. Computer docking of TUDCA to the model of light-activated rhodopsin revealed that it interacts using similar mode of binding to the C-terminal domain of transducin alpha subunit. The ring regions of TUDCA made hydrophobic contacts with loop 3 region of rhodopsin, while the tail of TUDCA is exposed to solvent. The results show that TUDCA interacts specifically with rhodopsin, which may contribute to its wide-ranging effects on retina physiology and as a potential therapeutic compound for retina degenerative diseases.


Assuntos
Colagogos e Coleréticos/metabolismo , Proteínas de Ligação ao GTP/metabolismo , Luz , Rodopsina/efeitos da radiação , Ácido Tauroquenodesoxicólico/metabolismo , Animais , Bovinos , Opsinas/química , Ligação Proteica , Estrutura Secundária de Proteína , Receptores Acoplados a Proteínas G/química , Receptores Acoplados a Proteínas G/metabolismo , Rodopsina/química , Rodopsina/metabolismo , Transdução de Sinais
12.
Phys Chem Chem Phys ; 20(48): 30174-30188, 2018 Dec 12.
Artigo em Inglês | MEDLINE | ID: mdl-30484791

RESUMO

19F nuclei are useful labels in solid-state NMR studies, since their chemical shift and tensor elements are very sensitive to the electrostatic and space-filling properties of their local environment. In this study we have exploited a fluorine substituent, strategically placed at the C-12-position of 11-cis retinal, the chromophore of visual rhodopsins. This label was used to explore the local environment of the chromophore in the ground state of bovine rhodopsin and its active photo-intermediate Meta II. In addition, the chemical shift and tensor elements of the chromophore in the free state in a membrane environment and the bound state in the protein were determined. Upon binding of the chromophore into rhodopsin and Meta II, the isotropic chemical shift changes in the opposite direction by +9.7 and -8.4 ppm, respectively. An unusually large isotropic shift difference of 35.9 ppm was observed between rhodopsin and Meta II. This partly originates in the light-triggered 11-cis to all-trans isomerization of the chromophore. The other part reflects the local conformational rearrangements in the chromophore and the binding pocket. These NMR data were correlated with the available X-ray structures of rhodopsin and Meta II using bond polarization theory. For this purpose hydrogen atoms have to be inserted and hereto a family of structures were derived that best correlated with the well-established 13C chemical shifts. Based upon these structures, a 12-F derivative was obtained that best corresponded with the experimentally determined 19F chemical shifts and tensor elements. The combined data indicate strong changes in the local environment of the C-12 position and a substantially different interaction pattern with the protein in Meta II as compared to rhodopsin.


Assuntos
Retinaldeído/análogos & derivados , Retinaldeído/química , Rodopsina/química , Animais , Bovinos , Flúor/química , Luz , Espectroscopia de Ressonância Magnética , Modelos Químicos , Retinaldeído/efeitos da radiação , Rodopsina/isolamento & purificação , Rodopsina/efeitos da radiação
13.
Nature ; 482(7385): 369-74, 2012 Jan 22.
Artigo em Inglês | MEDLINE | ID: mdl-22266941

RESUMO

Channelrhodopsins (ChRs) are light-gated cation channels derived from algae that have shown experimental utility in optogenetics; for example, neurons expressing ChRs can be optically controlled with high temporal precision within systems as complex as freely moving mammals. Although ChRs have been broadly applied to neuroscience research, little is known about the molecular mechanisms by which these unusual and powerful proteins operate. Here we present the crystal structure of a ChR (a C1C2 chimaera between ChR1 and ChR2 from Chlamydomonas reinhardtii) at 2.3 Å resolution. The structure reveals the essential molecular architecture of ChRs, including the retinal-binding pocket and cation conduction pathway. This integration of structural and electrophysiological analyses provides insight into the molecular basis for the remarkable function of ChRs, and paves the way for the precise and principled design of ChR variants with novel properties.


Assuntos
Cátions/metabolismo , Chlamydomonas reinhardtii/química , Ativação do Canal Iônico/efeitos da radiação , Canais Iônicos/química , Luz , Rodopsina/química , Animais , Bacteriorodopsinas/química , Sítios de Ligação , Bovinos , Chlamydomonas reinhardtii/genética , Cristalografia por Raios X , Canais Iônicos/genética , Canais Iônicos/efeitos da radiação , Modelos Moleculares , Mutação , Conformação Proteica , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/efeitos da radiação , Retinaldeído/metabolismo , Rodopsina/genética , Rodopsina/efeitos da radiação , Bases de Schiff/química , Eletricidade Estática
14.
Biochem Biophys Res Commun ; 493(1): 352-357, 2017 11 04.
Artigo em Inglês | MEDLINE | ID: mdl-28887035

RESUMO

Bacteriorhodopsin has attracted remarkable attention as a photoactive bio-nanomaterial in the last decades. However, its instability in the presence of detergents has restricted the extent to which bacteriorhodopsin may be applied. In this study, we investigated the oligomerization of a eukaryotic light-driven H+-pump, Leptosphaeria rhodopsin, using circular dichroism spectroscopy and other biophysical and biochemical methods. Our findings revealed that Leptosphaeria rhodopsin assembled into oligomers in the cell membrane and also in 0.05% DDM detergent micelles. Moreover, unlike bacteriorhodopsin in purple membrane, Leptosphaeria rhodopsin retained its oligomeric structure in 1% Triton X-100 and demonstrated strong resistance to other common detergents. A maximal photocurrent density of ∼85 nA/cm2 was consistently generated, which was substantially larger than that of solubilized bacteriorhodopsin (∼10 nA/cm2). Therefore, oligomeric Leptosphaeria rhodopsin may be a promising bio-nanomaterial, and an alternative to bacteriorhodopsin, especially with the use of detergents.


Assuntos
Ascomicetos/química , Detergentes/química , Nanopartículas/química , Nanopartículas/efeitos da radiação , Rodopsina/química , Rodopsina/efeitos da radiação , Bacteriorodopsinas/química , Bacteriorodopsinas/efeitos da radiação , Luz , Teste de Materiais , Potenciais da Membrana/efeitos da radiação
15.
Nature ; 465(7299): 788-92, 2010 Jun 10.
Artigo em Inglês | MEDLINE | ID: mdl-20473285

RESUMO

Despite a rapidly-growing scientific and clinical brain imaging literature based on functional magnetic resonance imaging (fMRI) using blood oxygenation level-dependent (BOLD) signals, it remains controversial whether BOLD signals in a particular region can be caused by activation of local excitatory neurons. This difficult question is central to the interpretation and utility of BOLD, with major significance for fMRI studies in basic research and clinical applications. Using a novel integrated technology unifying optogenetic control of inputs with high-field fMRI signal readouts, we show here that specific stimulation of local CaMKIIalpha-expressing excitatory neurons, either in the neocortex or thalamus, elicits positive BOLD signals at the stimulus location with classical kinetics. We also show that optogenetic fMRI (of MRI) allows visualization of the causal effects of specific cell types defined not only by genetic identity and cell body location, but also by axonal projection target. Finally, we show that of MRI within the living and intact mammalian brain reveals BOLD signals in downstream targets distant from the stimulus, indicating that this approach can be used to map the global effects of controlling a local cell population. In this respect, unlike both conventional fMRI studies based on correlations and fMRI with electrical stimulation that will also directly drive afferent and nearby axons, this of MRI approach provides causal information about the global circuits recruited by defined local neuronal activity patterns. Together these findings provide an empirical foundation for the widely-used fMRI BOLD signal, and the features of of MRI define a potent tool that may be suitable for functional circuit analysis as well as global phenotyping of dysfunctional circuitry.


Assuntos
Encéfalo/citologia , Encéfalo/efeitos da radiação , Imageamento por Ressonância Magnética , Vias Neurais/efeitos da radiação , Neurônios/metabolismo , Neurônios/efeitos da radiação , Potenciais de Ação/efeitos da radiação , Anestesia , Animais , Encéfalo/anatomia & histologia , Encéfalo/irrigação sanguínea , Circulação Cerebrovascular/efeitos da radiação , Clorófitas , Medições Luminescentes , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Córtex Motor/irrigação sanguínea , Córtex Motor/citologia , Córtex Motor/metabolismo , Córtex Motor/efeitos da radiação , Neurônios/classificação , Neurônios/citologia , Oxigênio/sangue , Oxigênio/metabolismo , Estimulação Luminosa , Ratos , Rodopsina/genética , Rodopsina/metabolismo , Rodopsina/efeitos da radiação , Tálamo/irrigação sanguínea , Tálamo/citologia , Tálamo/metabolismo , Tálamo/efeitos da radiação
16.
Dokl Biochem Biophys ; 465: 424-7, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26728740

RESUMO

Anionic channelrhodopsin slow ChloC was expressed in the culture of nerve cells and in vivo in mouse brain. We demonstrated ability of slow ChloC to suppress effectively the activity of the neuron in response to the illumination with the visible light. It has been shown for a first time that slow ChloC works equally efficiently in both neuronal culture and in the whole brain being expressed in vivo. Thus, slow ChloC could be considered as an effective optogenetic tool capable in response to light stimulation to inhibit the generation of action potentials in the neuron.


Assuntos
Potenciais de Ação , Encéfalo/metabolismo , Neurônios/metabolismo , Rodopsina/metabolismo , Animais , Encéfalo/citologia , Encéfalo/fisiologia , Células Cultivadas , Luz , Camundongos , Neurônios/fisiologia , Optogenética/métodos , Rodopsina/genética , Rodopsina/efeitos da radiação
17.
Angew Chem Int Ed Engl ; 54(46): 13555-60, 2015 Nov 09.
Artigo em Inglês | MEDLINE | ID: mdl-26383645

RESUMO

Continued activation of the photocycle of the dim-light receptor rhodopsin leads to the accumulation of all-trans-retinal in the rod outer segments (ROS). This accumulation can damage the photoreceptor cell. For retinal homeostasis, deactivation processes are initiated in which the release of retinal is delayed. One of these processes involves the binding of arrestin to rhodopsin. Here, the interaction of pre-activated truncated bovine visual arrestin (Arr(Tr)) with rhodopsin in 1,2-diheptanoyl-sn-glycero-3-phosphocholine (DHPC) micelles is investigated by solution NMR techniques and flash photolysis spectroscopy. Our results show that formation of the rhodopsin-arrestin complex markedly influences partitioning in the decay kinetics of rhodopsin, which involves the simultaneous formation of a meta II and a meta III state from the meta I state. Binding of Arr(Tr) leads to an increase in the population of the meta III state and consequently to an approximately twofold slower release of all-trans-retinal from rhodopsin.


Assuntos
Arrestina/química , Arrestina/metabolismo , Processos Fotoquímicos , Rodopsina/química , Rodopsina/metabolismo , Animais , Bovinos , Rodopsina/efeitos da radiação
18.
Biophys J ; 106(8): 1607-17, 2014 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-24739160

RESUMO

In most studied microbial rhodopsins two conserved carboxylic acid residues (the homologs of Asp-85 and Asp-212 in bacteriorhodopsin) and an arginine residue (the homolog of Arg-82) form a complex counterion to the protonated retinylidene Schiff base, and neutralization of the negatively charged carboxylates causes red shifts of the absorption maximum. In contrast, the corresponding neutralizing mutations in some relatively low-efficiency channelrhodopsins (ChRs) result in blue shifts. These ChRs do not contain a lysine residue in the second helix, conserved in higher efficiency ChRs (Lys-132 in the crystallized ChR chimera). By action spectroscopy of photoinduced channel currents in HEK293 cells and absorption spectroscopy of detergent-purified pigments, we found that in tested ChRs the Lys-132 homolog controls the direction of spectral shifts in the mutants of the photoactive site carboxylic acid residues. Analysis of double mutants shows that red spectral shifts occur when this Lys is present, whether naturally or by mutagenesis, and blue shifts occur when it is replaced with a neutral residue. A neutralizing mutation of the Lys-132 homolog alone caused a red spectral shift in high-efficiency ChRs, whereas its introduction into low-efficiency ChR1 from Chlamydomonas augustae (CaChR1) caused a blue shift. Taking into account that the effective charge of the carboxylic acid residues is a key factor in microbial rhodopsin spectral tuning, these findings suggest that the Lys-132 homolog modulates their pKa values. On the other hand, mutation of the Arg-82 homolog that fulfills this role in bacteriorhodopsin caused minimal spectral changes in the tested ChRs. Titration revealed that the pKa of the Asp-85 homolog in CaChR1 lies in the alkaline region unlike in most studied microbial rhodopsins, but is substantially decreased by introduction of a Lys-132 homolog or neutralizing mutation of the Asp-212 homolog. In the three ChRs tested the Lys-132 homolog also alters channel current kinetics.


Assuntos
Luz , Lisina/química , Rodopsina/química , Rodopsina/efeitos da radiação , Sequência de Aminoácidos , Chlamydomonas/metabolismo , Células HEK293 , Humanos , Concentração de Íons de Hidrogênio , Ativação do Canal Iônico , Cinética , Dados de Sequência Molecular , Proteínas Mutantes/química , Proteínas Mutantes/metabolismo , Estrutura Secundária de Proteína , Prótons , Bases de Schiff/metabolismo , Homologia de Sequência de Aminoácidos , Análise Espectral , Relação Estrutura-Atividade
19.
Eur J Neurosci ; 39(1): 98-106, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-24236954

RESUMO

Catecholaminergic neurons of the rostral ventrolateral medulla (RVLM-CA neurons; C1 neurons) contribute to the sympathetic, parasympathetic and neuroendocrine responses elicited by physical stressors such as hypotension, hypoxia, hypoglycemia, and infection. Most RVLM-CA neurons express vesicular glutamate transporter (VGLUT)2, and may use glutamate as a ionotropic transmitter, but the importance of this mode of transmission in vivo is uncertain. To address this question, we genetically deleted VGLUT2 from dopamine-ß-hydroxylase-expressing neurons in mice [DßH(Cre/0) ;VGLUT2(flox/flox) mice (cKO mice)]. We compared the in vivo effects of selectively stimulating RVLM-CA neurons in cKO vs. control mice (DßH(Cre/0) ), using channelrhodopsin-2 (ChR2-mCherry) optogenetics. ChR2-mCherry was expressed by similar numbers of rostral ventrolateral medulla (RVLM) neurons in each strain (~400 neurons), with identical selectivity for catecholaminergic neurons (90-99% colocalisation with tyrosine hydroxylase). RVLM-CA neurons had similar morphology and axonal projections in DßH(Cre/0) and cKO mice. Under urethane anesthesia, photostimulation produced a similar pattern of activation of presumptive ChR2-positive RVLM-CA neurons in DßH(Cre/0) and cKO mice. Photostimulation in conscious mice produced frequency-dependent respiratory activation in DßH(Cre/0) mice but no effect in cKO mice. Similarly, photostimulation under urethane anesthesia strongly activated efferent vagal nerve activity in DßH(Cre/0) mice only. Vagal responses were unaffected by α1 -adrenoreceptor blockade. In conclusion, two responses evoked by RVLM-CA neuron stimulation in vivo require the expression of VGLUT2 by these neurons, suggesting that the acute autonomic responses driven by RVLM-CA neurons are mediated by glutamate.


Assuntos
Bulbo/fisiologia , Neurônios/metabolismo , Optogenética , Respiração , Nervo Vago/fisiologia , Proteína Vesicular 2 de Transporte de Glutamato/metabolismo , Animais , Catecolaminas/metabolismo , Ácido Glutâmico/metabolismo , Bulbo/citologia , Bulbo/metabolismo , Camundongos , Camundongos Endogâmicos C57BL , Camundongos Knockout , Neurônios/fisiologia , Neurônios/efeitos da radiação , Estimulação Luminosa , Rodopsina/genética , Rodopsina/metabolismo , Rodopsina/efeitos da radiação , Proteína Vesicular 2 de Transporte de Glutamato/genética
20.
Vis Neurosci ; 30(4): 169-74, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23985328

RESUMO

Photostasis is a phenomenon where the photoreceptor outer segment (OS) length and its rhodopsin content vary depending on environmental lighting. When light is reduced for extended periods, it is argued that OS lengthen and its rhodopsin concentration rises to increase photon capture in darker environment. Increases in OS length may occur because the retinal pigment epithelium (RPE) cells reduce OS consumption in prolonged darkness. But sample sizes in assessing changes in OS length have been small, and results highly varied with no statistical analysis ever offered. Further, animals used were often albinos, which have abnormal RPE cells. Here we keep pigmented and albino mice for 21 days in darkness and compare OS length with those in a normal 12:12 light/dark environment. We measured approximately 1300 OS but found no statistically significant difference in their lengths between light and dark groups in either pigmentation phenotype, although there was a small trend in the data favoring OS extension in the dark. Given that earlier studies were undertaken on limited samples with no statistical analysis, our data pose serious questions for the notion of mammalian photostasis in terms of significant OS plasticity.


Assuntos
Luz , Rodopsina/fisiologia , Segmento Externo da Célula Bastonete/fisiologia , Envelhecimento/fisiologia , Animais , Adaptação à Escuridão/fisiologia , Meio Ambiente , Olho/crescimento & desenvolvimento , Enucleação Ocular , Camundongos , Camundongos Endogâmicos BALB C , Camundongos Endogâmicos C57BL , Disco Óptico/fisiologia , Tetróxido de Ósmio , Epitélio Pigmentado Ocular/fisiologia , Pigmentação , Retina/fisiologia , Rodopsina/metabolismo , Rodopsina/efeitos da radiação , Segmento Externo da Célula Bastonete/metabolismo , Segmento Externo da Célula Bastonete/efeitos da radiação , Fixação de Tecidos
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