MpTheory Java library: a multi-platform Java library for systems biology based on the Metabolic P theory.
Bioinformatics
; 31(8): 1328-30, 2015 Apr 15.
Article
em En
| MEDLINE
| ID: mdl-25504849
ABSTRACT
UNLABELLED MpTheory Java library is an open-source project collecting a set of objects and algorithms for modeling observed dynamics by means of the Metabolic P (MP) theory, that is, a mathematical theory introduced in 2004 for modeling biological dynamics. By means of the library, it is possible to model biological systems both at continuous and at discrete time. Moreover, the library comprises a set of regression algorithms for inferring MP models starting from time series of observations. To enhance the modeling experience, beside a pure Java usage, the library can be directly used within the most popular computing environments, such as MATLAB, GNU Octave, Mathematica and R. AVAILABILITY AND IMPLEMENTATION The library is open-source and licensed under the GNU Lesser General Public License (LGPL) Version 3.0. Source code, binaries and complete documentation are available at http//mptheory.scienze.univr.it. CONTACT luca.marchetti@univr.it, marchetti@cosbi.eu SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
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Base de dados:
MEDLINE
Assunto principal:
Algoritmos
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Linguagens de Programação
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Software
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Biologia de Sistemas
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Metabolismo
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Modelos Biológicos
Limite:
Humans
Idioma:
En
Revista:
Bioinformatics
Assunto da revista:
INFORMATICA MEDICA
Ano de publicação:
2015
Tipo de documento:
Article