A DNA origami-based device for investigating DNA bending proteins by transmission electron microscopy.
Nanoscale
; 15(7): 3212-3218, 2023 Feb 16.
Article
em En
| MEDLINE
| ID: mdl-36722916
ABSTRACT
The DNA origami technique offers precise positioning of nanoscale objects with high accuracy. This has facilitated the development of DNA origami-based functional nanomechanical devices that enable the investigation of DNA-protein interactions at the single particle level. Herein, we used the DNA origami technique to fabricate a nanoscale device for studying DNA bending proteins. For a proof of concept, we used TATA-box binding protein (TBP) to evaluate our approach. Upon binding to the TATA box, TBP causes a bend to DNA of â¼90°. Our device translates this bending into an angular change that is readily observable with a conventional transmission electron microscope (TEM). Furthermore, we investigated the roles of transcription factor II A (TF(II)A) and transcription factor II B (TF(II)B). Our results indicate that TF(II)A introduces additional bending, whereas TF(II)B does not significantly alter the TBP-DNA structure. Our approach can be readily adopted to a wide range of DNA-bending proteins and will aid the development of DNA-origami-based devices tailored for the investigation of DNA-protein interactions.
Texto completo:
1
Base de dados:
MEDLINE
Assunto principal:
DNA
/
Proteínas de Ligação a DNA
Idioma:
En
Revista:
Nanoscale
Ano de publicação:
2023
Tipo de documento:
Article
País de afiliação:
Finlândia