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Positive effects of public breeding on US rice yields under future climate scenarios.
Wang, Diane R; Jamshidi, Sajad; Han, Rongkui; Edwards, Jeremy D; McClung, Anna M; McCouch, Susan R.
Afiliação
  • Wang DR; Department of Agronomy, Purdue University, West Lafayette, IN 47901.
  • Jamshidi S; Department of Agronomy, Purdue University, West Lafayette, IN 47901.
  • Han R; Department of Plant Sciences, University of California, Davis, CA 95616.
  • Edwards JD; Dale Bumpers National Rice Research Center, United States Department of Agriculture - Agricultural Research Service, Stuttgart, AR 72160.
  • McClung AM; Dale Bumpers National Rice Research Center, United States Department of Agriculture - Agricultural Research Service, Stuttgart, AR 72160.
  • McCouch SR; Section of Plant Breeding and Genetics, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853.
Proc Natl Acad Sci U S A ; 121(13): e2309969121, 2024 Mar 26.
Article em En | MEDLINE | ID: mdl-38498708
ABSTRACT
In this study, we model and predict rice yields by integrating molecular marker variation, varietal productivity, and climate, focusing on the Southern U.S. rice-growing region. This region spans the states of Arkansas, Louisiana, Texas, Mississippi, and Missouri and accounts for 85% of total U.S. rice production. By digitizing and combining four decades of county-level variety acreage data (1970 to 2015) with varietal information from genotyping-by-sequencing data, we estimate annual historical county-level allele frequencies. These allele frequencies are used together with county-level weather and yield data to develop ten machine learning models for yield prediction. A two-layer meta-learner ensemble model that combines all ten methods is externally evaluated against observations from historical Uniform Regional Rice Nursery trials (1980 to 2018) conducted in the same states. Finally, the ensemble model is used with forecasted weather from the Coupled Model Intercomparison Project across the 110 rice-growing counties to predict production in the coming decades for Composite Variety Groups assembled based on year of release, breeding program, and several breeding trends. Results indicate positive effects over time of public breeding on rice resilience to future climates, and potential reasons are discussed.
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Texto completo: 1 Base de dados: MEDLINE Assunto principal: Oryza Idioma: En Revista: Proc Natl Acad Sci U S A Ano de publicação: 2024 Tipo de documento: Article

Texto completo: 1 Base de dados: MEDLINE Assunto principal: Oryza Idioma: En Revista: Proc Natl Acad Sci U S A Ano de publicação: 2024 Tipo de documento: Article