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1.
J Biomol Struct Dyn ; 26(6): 701-18, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19385699

RESUMO

In the present work, we employed UV-VIS spectroscopy, fluorescence methods, and circular dichroism spectroscopy (CD) to study the interaction of dye Hoechst 33258, Hoechst 33342, and their derivatives to poly[d(AT)].poly[d(AT)], poly(dA).poly(dT), and DNA dodecamer with the sequence 5'-CGTATATATACG-3'. We identified three types of complexes formed by Hoechst 33258, Hoechst 33342, and methylproamine with DNA, corresponding to the binding of each drug in monomer, dimer, and tetramer forms. In a dimer complex, two dye molecules are sandwiched in the same place of the minor DNA groove. Our data show that Hoechst 33258, Hoechst 33342, and methylproamine also form complexes of the third type that reflects binding of dye associates (probably tetramers) to DNA. Substitution of a hydrogen atom in the ortho position of the phenyl ring by a methyl group has a little effect on binding of monomers to DNA. However it reduces strength of binding of tetramers to DNA. In contrast, a Hoechst derivative containing the ortho-isopropyl group in the phenyl ring exhibits a low affinity to poly(dA).poly(dT) and poly[d(AT)].poly[d(AT)] and binds to DNA only in the monomer form. This can be attributed to a sterical hindrance caused by the ortho-isopropyl group for side-by-side accommodation of two dye molecules in the minor groove. Our experiments show that mode of binding of Hoechst 33258 derivatives and their affinity for DNA depend on substituents in the ortho position of the phenyl ring of the dye molecule. A statistical mechanical treatment of binding of Hoechst 33258 and its derivatives to a polynucleotide lattice is described and used for determination of binding parameters of Hoechst 33258 and its derivatives to poly[d(AT)].poly[d(AT)] and poly(dA).poly(dT).


Assuntos
Benzimidazóis/química , Bisbenzimidazol/química , DNA/química , Sequência de Bases , Sítios de Ligação , Ligação Competitiva , Dicroísmo Circular , Cinética , Modelos Químicos , Modelos Moleculares , Estrutura Molecular , Conformação de Ácido Nucleico , Oligonucleotídeos/química , Poli T/química , Poli dA-dT/química , Espectrometria de Fluorescência , Espectrofotometria Ultravioleta , Termodinâmica
2.
Biochim Biophys Acta ; 1478(1): 69-77, 2000 Mar 16.
Artigo em Inglês | MEDLINE | ID: mdl-10719176

RESUMO

Intrinsic lysozyme-like activity was demonstrated for destabilase from the medicinal leech supported by (1) high specific lysozyme activity of the highly purified destabilase, (2) specific inhibition of the lysozyme-like activity by anti-destabilase antibodies, and (3) appreciable lysozyme-like activity in insect cells infected with recombinant baculoviruses carrying cDNAs encoding different isoforms of destabilase. Several isoforms of destabilase constitute a protein family at least two members of which are characterized by lysozyme activity. The corresponding gene family implies an ancient evolutionary history of the genes although the function(s) of various lysozymes in the leech remains unclear. Differences in primary structures of the destabilase family members and members of known lysozyme families allow one to assign the former to a new family of lysozymes. New proteins homologous to destabilase were recently described for Caenorhabditis elegans and bivalve mollusks suggesting that the new lysozyme family can be widely distributed among invertebrates. It remains to be investigated whether the two enzymatic activities (isopeptidase and lysozyme-like) are attributes of one and the same protein.


Assuntos
Endopeptidases/metabolismo , Sanguessugas/enzimologia , Muramidase/metabolismo , Sequência de Aminoácidos , Animais , Anticorpos/imunologia , Baculoviridae/genética , Carbono-Nitrogênio Liases/metabolismo , Linhagem Celular , DNA Complementar/genética , Endopeptidases/genética , Endopeptidases/imunologia , Escherichia coli/metabolismo , Expressão Gênica , Isoenzimas/química , Dados de Sequência Molecular , Muramidase/química , Muramidase/genética , Saccharomyces cerevisiae/metabolismo , Alinhamento de Sequência , Especificidade por Substrato
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