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1.
Res Vet Sci ; 132: 426-438, 2020 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-32777539

RESUMO

The current work investigated the discriminatory potential of MALDI-TOF MS fingerprinting towards most-relevant major (Streptococcus agalactiae, S. dysgalactiae, S. uberis) and minor (S. canis, S. parauberis, S. salivarius, S. equinus and S. gallolyticus) streptococci involved in bovine mastitis (BM), in comparison to 16S rRNA gene sequencing (GS)-based identification. The MALDI-TOF MS-generated spectral fingerprints were recruited for eliciting a detailed proteomic map that demonstrated clear variability for inter- and intra-species-specific biomarkers. Besides, a phyloproteomic dendrogram was evolved and comparatively analyzed against the phylogenetic one obtained from 16S rRNA GS in order to assess the differentiation of streptococci of bovine origin based on variability of protein fingerprints versus the variation of 16S rRNA gene homology. Results showed that the discrimination of BM-implicated streptococci can be obtained by both approaches; however MALDI-TOF MS was superior, achieving more variability at both intra- and sub-species levels. MALDI-TOF MS spectral analytics revealed that Streptococcus spp. exhibited three genus-specific biomarkers (peaks with m/z values at 2112, 4452 and 5955) and all streptococci exhibited spectral variability at both species and subspecies levels. Remarkably, MALDI-TOF MS fingerprinting was found to be at least as robust as 16S rRNA GS-based identification, allowing much cheaper and faster analysis, and additionally exhibiting high reliability for characterization of BM-implicated streptococci, thus proving to be a powerful tool that can be used independently within dairy diagnostics.


Assuntos
Mastite Bovina/microbiologia , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/veterinária , Infecções Estreptocócicas/veterinária , Streptococcus/fisiologia , Animais , Bovinos , Impressões Digitais de DNA/veterinária , Feminino , Filogenia , RNA Ribossômico 16S/análise , Análise de Sequência de RNA/veterinária , Infecções Estreptocócicas/microbiologia , Streptococcus/classificação , Streptococcus/isolamento & purificação
2.
Crit Rev Food Sci Nutr ; 56(15): 2511-2542, 2016 Nov 17.
Artigo em Inglês | MEDLINE | ID: mdl-25848852

RESUMO

Currently, food allergies are an important health concern worldwide. The presence of undeclared allergenic ingredients or the presence of traces of allergens due to contamination during food processing poses a great health risk to sensitized individuals. Therefore, reliable analytical methods are required to detect and identify allergenic ingredients in food products. The present review addresses the recent developments regarding the application of DNA- and protein-based methods for the detection of allergenic ingredients in foods. The fitness-for-purpose of reviewed methodology will be discussed, and future trends will be highlighted. Special attention will be given to the evaluation of the potential of newly developed and promising technologies that can improve the detection and identification of allergenic ingredients in foods, such as the use of biosensors and/or nanomaterials to improve detection limits, specificity, ease of use, or to reduce the time of analysis. Such rapid food allergen test methods are required to facilitate the reliable detection of allergenic ingredients by control laboratories, to give the food industry the means to easily determine whether its product has been subjected to cross-contamination and, simultaneously, to identify how and when this cross-contamination occurred.


Assuntos
Alérgenos/análise , DNA/análise , Proteínas Alimentares/análise , Hipersensibilidade Alimentar/imunologia , Alimentos , Alérgenos/genética , Técnicas Biossensoriais , Proteínas Alimentares/imunologia , Contaminação de Alimentos/análise , Manipulação de Alimentos , Humanos , Imunoensaio/métodos , Nanopartículas , Reação em Cadeia da Polimerase , Proteômica/métodos , Sensibilidade e Especificidade
3.
Food Microbiol ; 46: 239-245, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25475292

RESUMO

The main goal of this work was the identification of single nucleotide polymorphisms (SNPs) in the 16S rRNA gene of foodborne Bacillus spp. that may be useful for typing purposes. These species include, among others, Bacillus cereus, an important pathogenic species involved in food poisoning, and Bacillus licheniformis, Bacillus subtilis and Bacillus pumilus, which are causative agents of food spoilage described as responsible for foodborne disease outbreaks. With this purpose in mind, 52 Bacillus strains isolated from culture collections and fresh and processed food were considered. SNP type "Y" at sites 212 and 476 appeared in the majority of B. licheniformis studied strains. SNP type "R" at site 278 was detected in many strains of the B. subtilis/Bacillus amyloliquefaciens group, while polymorphism "Y" at site 173 was characteristic of the majority of strains of B. cereus/Bacillus thuringiensis group. The analysis of SNPs provided more intra-specific information than phylogenetic analysis in the cases of B. cereus and B. subtilis. Moreover, this study describes novel SNPs that should be considered when designing 16S rRNA-based primers and probes for multiplex-PCR, Real-Time PCR and microarray systems for foodborne Bacillus spp.


Assuntos
Bacillus/genética , Bacillus/isolamento & purificação , DNA Bacteriano/genética , Polimorfismo de Nucleotídeo Único , RNA Ribossômico 16S/genética , Bacillus/classificação , Técnicas de Tipagem Bacteriana , Sequência de Bases , Microbiologia de Alimentos , Dados de Sequência Molecular , Filogenia
4.
Food Microbiol ; 46: 288-298, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25475298

RESUMO

Bacillus genus includes foodborne pathogenic and spoilage-associated species, such as Bacillus cereus, Bacillus licheniformis, Bacillus subtilis and Bacillus pumilus. Bacillus is also a heterogeneous genus that includes closely related species that are difficult to discriminate among, especially when well-conserved genes such as 16S rRNA and 23S rRNA are considered. The main goal of the present work was to study the usefulness of three housekeeping genes, the TU elongation factor (tuf), the DNA gyrase ß subunit (gyrB) and the RNA polymerase ß subunit (rpoB) genes, for use in differentiating among the most important foodborne Bacillus spp. sequences from 20 foodborne isolated Bacillus strains, and sequences belonging to different Bacillus spp. retrieved from the GenBank were analysed. In general terms, gyrB, rpoB and tuf gene regions for the strains considered in this study exhibited interspecific similarities of 57.8%, 67.23% and 77.66% respectively. Novel tufGPF and tufGPR universal primers targeted to the tuf gene were designed and proved to be useful for the amplification of all Bacillus spp considered. In conclusion, the tuf gene can be considered to be a good target for the differential characterisation of foodborne Bacillus species, especially for differentiating B. subtilis and B. cereus from other closely related species.


Assuntos
Bacillus/genética , Bacillus/isolamento & purificação , Proteínas de Bactérias/genética , Doenças Transmitidas por Alimentos/microbiologia , Bacillus/classificação , Técnicas de Tipagem Bacteriana , Microbiologia de Alimentos , Humanos , Dados de Sequência Molecular , Filogenia
5.
Biomed Res Int ; 2014: 156323, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24818128

RESUMO

Traditional culturing methods are still commonly applied for bacterial identification in the food control sector, despite being time and labor intensive. Microarray technologies represent an interesting alternative. However, they require higher costs and technical expertise, making them still inappropriate for microbial routine analysis. The present study describes the development of an efficient method for bacterial identification based on flow-through reverse dot-blot (FT-RDB) hybridization on membranes, coupled to the high specific ligation detection reaction (LDR). First, the methodology was optimized by testing different types of ligase enzymes, labeling, and membranes. Furthermore, specific oligonucleotide probes were designed based on the 16S rRNA gene, using the bioinformatic tool Oligonucleotide Retrieving for Molecular Applications (ORMA). Four probes were selected and synthesized, being specific for Aeromonas spp., Pseudomonas spp., Shewanella spp., and Morganella morganii, respectively. For the validation of the probes, 16 reference strains from type culture collections were tested by LDR and FT-RDB hybridization using universal arrays spotted onto membranes. In conclusion, the described methodology could be applied for the rapid, accurate, and cost-effective identification of bacterial species, exhibiting special relevance in food safety and quality.


Assuntos
Bactérias/isolamento & purificação , Microbiologia de Alimentos/métodos , Membranas Artificiais , Hibridização de Ácido Nucleico/métodos , Reação em Cadeia da Polimerase/métodos , Colódio , Sondas de DNA/metabolismo , Ligases/metabolismo , Reprodutibilidade dos Testes
6.
Food Microbiol ; 33(2): 235-42, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-23200657

RESUMO

The Bacillus genus includes species such as Bacillus cereus, Bacillus licheniformis and Bacillus subtilis, some of which may be pathogenic or causative agents in the spoilage of food products. The main goal of this work was to apply matrix-assisted laser desorption ionisation-time of flight (MALDI-TOF) mass fingerprinting to the classification of these Bacillus species. Genetic analyses were also compared to phyloproteomic analyses. A collection of 57 Bacillus strains isolated from fresh and processed food and from culture collections were studied and their mass spectra compiled. The resulting mass fingerprints were compared and characteristic peaks at the strain and species levels were assigned. The results showed that MALDI-TOF was a good complementary approach to 16S rRNA sequencing and even a more powerful tool in the accurate classification of Bacillus species, especially for differentiating B. subtilis and B. cereus from Bacillus amyloliquefaciens and Bacillus thuringiensis, respectively. MALDI-TOF was also found to provide valuable information at both intra- and interspecies levels in the Bacillus species studied.


Assuntos
Bacillus cereus/química , Bacillus subtilis/química , Bacillus/química , Técnicas de Tipagem Bacteriana/métodos , Microbiologia de Alimentos , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos , Bacillus/classificação , Bacillus/genética , Bacillus/isolamento & purificação , Bacillus cereus/classificação , Bacillus cereus/genética , Bacillus cereus/isolamento & purificação , Bacillus subtilis/classificação , Bacillus subtilis/genética , Bacillus subtilis/isolamento & purificação
7.
Food Microbiol ; 30(1): 91-7, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22265288

RESUMO

Streptococcus parauberis is known as an etiological agent of mastitis in cows and for producing streptococcosis in farmed fish, although its presence in foods has seldom been reported. In this work, two bacterial isolates were recovered from a spoiled vacuum-packaged refrigerated seafood product. Both isolates were identified by 16S rRNA gene sequencing, exhibiting 99% homology with respect to S. parauberis. Both isolates were also characterized by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS). Genetic analysis revealed the clonal homogeneity of the isolates and their grouping together with other S. parauberis strains in a different cluster with respect to Streptococcus uberis strains. Proteomic analysis by MALDI-TOF MS allowed for the identification of five mass peaks in the range of 2200-6000 m/z that resulted to be specific to the species S. parauberis and allowed its rapid and direct identification with respect to other pathogenic and spoilage bacteria potentially present in seafood and other food products. This study represents, to our knowledge, the first report of S. parauberis in seafood in general and in vacuum-packed food products in particular. Moreover, it provides a rapid method based on MALDI-TOF MS for the identification of S. parauberis.


Assuntos
Contaminação de Alimentos/análise , Embalagem de Alimentos/métodos , Alimentos Marinhos/microbiologia , Streptococcus/classificação , Streptococcus/isolamento & purificação , Técnicas de Tipagem Bacteriana , DNA Bacteriano/genética , Microbiologia de Alimentos/métodos , Genótipo , Fenótipo , Proteômica , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos , Streptococcus/genética , Vácuo
8.
Int J Food Microbiol ; 151(2): 182-9, 2011 Dec 02.
Artigo em Inglês | MEDLINE | ID: mdl-21925757

RESUMO

Turbot (Psetta maxima) and blackspot seabream (Pagellus bogaraveo) represent two of the most important emerging farmed fish species in European countries. However, no information of the presence and development of histamine-producing bacteria on them has been reported so far. Accordingly, the aim of this study was to isolate and identify the main histamine-producing bacteria in farmed turbot and blackspot seabream. For this study, 24 isolates (12 from turbot and 12 from blackspot seabream) were preliminarily selected on Niven medium. Two of these isolates were confirmed as prolific histamine producers by HPLC. Thus, Pseudomonas fragi (isolated from turbot) and Pseudomonas syringae (isolated from blackspot seabream) were able to produce 272±69ppm and 173±45ppm of histamine in vitro, respectively, after incubation at 30°C/24h. While turbot fillets proved to be quite resistant to histamine formation at temperatures below 10°C, blackspot seabream fillets inoculated with P. syringae and the prolific histamine former Morganella morganii accumulated 696±84 and 760±59ppm histamine, respectively, under such conditions. Genetic identification based on 16S rRNA sequencing was performed in parallel with the investigation of characteristic mass spectral profiles of the isolates by matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF MS). The MALDI-TOF MS analyses provided species-specific fingerprints, which allow rapid identification and classification of the isolates. Six genus-specific mass peaks in the range of 2218-4434 m/z were shared by both strains. Bacterial identification was achieved by the identification of six species-specific mass peaks in the ranges of 2534-7183 m/z and 2536-9113 m/z for P. fragi and P. syringae, respectively.


Assuntos
Linguados/microbiologia , Histamina/biossíntese , Morganella morganii/isolamento & purificação , Pseudomonas/isolamento & purificação , Dourada/microbiologia , Animais , DNA Bacteriano/genética , Dados de Sequência Molecular , Morganella morganii/classificação , Morganella morganii/genética , Morganella morganii/metabolismo , Proteoma/análise , Pseudomonas/classificação , Pseudomonas/genética , Pseudomonas/metabolismo , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
9.
Food Microbiol ; 28(3): 605-10, 2011 May.
Artigo em Inglês | MEDLINE | ID: mdl-21356471

RESUMO

A new primer-probe set for the detection and quantification of Bacillus cereus, Bacillus licheniformis and Bacillus subtilis by real-time PCR (Rti-PCR) was developed. For it, forty-eight strains belonging to these species were considered. The DNA of these strains was isolated and a fragment of the 16S rRNA gene amplified. The amplicons were sequenced and the obtained sequences were aligned with reference sequences from the GenBank. For the development of the Real-Time PCR (RTi-PCR) methodology based on TaqMan probes, a primer pair and probe, specific for the studied Bacillus spp., were designed. To establish the quantification method, two RTi-PCR standard curves were constructed; one with DNA extracted from a serially-diluted B. cereus culture and a second curve with DNA extracted from a sterilised food product inoculated with serial dilutions of B. cereus. The curves exhibited R(2) values of 0.9969 and 0.9958 respectively. Linear correlations between the log(10) input DNA concentration and the threshold cycle (Ct) values were observed with a magnitude of linearity in the range of 1.65 × 10(1) CFU/mL to 1.65 × 10(6) CFU/mL for both standard curves. The specificity of the designed primers and probe was tested with DNA extracted from B. cereus, B. licheniformis and B. subtilis strains, which gave Ct values between 14 and 15, whereas non-specific amplifications of the DNA from other microbial species of food interest exhibited a Ct value above 28.5. To our knowledge, this method represents the first study about the quantification of spoilage and/or pathogenic B. cereus, B. licheniformis and B. subtilis in food products, with the aim to prevent the presence of these undesirable species in the food chain.


Assuntos
Bacillus/isolamento & purificação , DNA Bacteriano/análise , Contaminação de Alimentos/análise , Reação em Cadeia da Polimerase , Bacillus cereus/isolamento & purificação , Bacillus subtilis/isolamento & purificação , Contagem de Colônia Microbiana , Microbiologia de Alimentos , Amplificação de Genes , RNA Ribossômico 16S/genética , Alinhamento de Sequência , Análise de Sequência de DNA , Especificidade da Espécie
10.
J Appl Microbiol ; 107(4): 1392-403, 2009 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-19426265

RESUMO

AIMS: The characterization of four novel bacteriocin-producing enterococcal strains, isolated from nonfermented animal foods, was carried out with a view to evaluate their potential application as probiotics in raw and processed foodstuffs. METHODS AND RESULTS: 16S rRNA sequencing and random amplification of polymorphic DNA-polymerase chain reaction (RAPD-PCR) analysis allowed the identification and intra-specific grouping of Enterococcus faecium strains, which inhibited the growth of four relevant food-borne pathogenic and spoilage species. Enterococcus faecium strains exhibited remarkable probiotic profiles, being able to survive to pH 3.0 and to the presence of bile salts, pancreatin and pepsin. Enterococcus faecium strains evaluated did not exhibit bile salt hydrolase or haemolytic activity, but showed good adhesion properties, also exhibiting sensitivity to clinically relevant antimicrobial agents. CONCLUSIONS: In our study, DNA sequencing of the 16S rRNA gene and RAPD-PCR analysis were equally discriminatory for typing E. faecium strains. This study also confirmed the potential tolerance and survival of E. faecium strains isolated from nonfermented animal foods to the gastrointestinal tract. SIGNIFICANCE AND IMPACT OF THE STUDY: This study represents the first report on potential probiotic E. faecium strains isolated from nonfermented meat and fish. Their moderate heat resistance opens the way to their potential use as probiotics in minimally processed foods subjected to moderate heat processing.


Assuntos
Bacteriocinas/genética , Enterococcus faecium/genética , Enterococcus faecium/isolamento & purificação , Peixes/microbiologia , Carne/microbiologia , Probióticos/farmacologia , Amidoidrolases/farmacologia , Animais , Antibacterianos/farmacologia , Bactérias/efeitos dos fármacos , Bactérias/crescimento & desenvolvimento , Aderência Bacteriana , Técnicas de Tipagem Bacteriana , Bacteriocinas/isolamento & purificação , Bovinos , Contagem de Colônia Microbiana , DNA Bacteriano/genética , Enterococcus faecium/efeitos dos fármacos , Enterococcus faecium/crescimento & desenvolvimento , Contaminação de Alimentos/análise , Genótipo , Temperatura Alta , Concentração de Íons de Hidrogênio , Testes de Sensibilidade Microbiana , Pancreatina/farmacologia , Pepsina A/farmacologia , Fenótipo , Probióticos/isolamento & purificação , RNA Ribossômico 16S/genética , Técnica de Amplificação ao Acaso de DNA Polimórfico
11.
Poult Sci ; 87(8): 1643-8, 2008 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-18648061

RESUMO

The resistance rates of intestinal Escherichia coli populations from poultry were determined during treatment and withdrawal period with 3 antimicrobial agents commonly used as therapeutics in poultry medicine. A total of 108 chickens were considered: 18 were treated orally with enrofloxacin, 18 with doxycycline, and 18 with sulfonamides, whereas another 18 chickens were maintained as controls for each antimicrobial group. Fecal samples were taken during the treatment and after the withdrawal period, and E. coli were isolated through Fluorocult media plating. A total of 648 E. coli strains (216 per antimicrobial tested) were isolated and identified though biochemical methods. Minimal inhibitory concentrations to the antimicrobials used were also determined using a broth microdilution method. The resistance rates of intestinal E. coli to all of the antimicrobials tested significantly increased during the course of the therapeutic treatment. In addition, significant differences (P = 0.0136) in resistance rates persisted between the intestinal E. coli of the enrofloxacin-treated and control batches until the end of the withdrawal period, but this difference was not observed for the cases of doxycycline or sulfonamides treatments. Antimicrobial use in poultry medicine seems to select for antimicrobial-resistant strains of pathogenic bacterial species such as E. coli. In some cases, the higher frequencies of resistant strains may persist in the avian intestinal tract until the end of the withdrawal period, when it is legal to use these animals for human consumption.


Assuntos
Antibacterianos/farmacologia , Galinhas/microbiologia , Escherichia coli/efeitos dos fármacos , Intestinos/microbiologia , Animais , Farmacorresistência Bacteriana , Escherichia coli/genética , Escherichia coli/crescimento & desenvolvimento , Masculino , Testes de Sensibilidade Microbiana/veterinária
12.
Lett Appl Microbiol ; 41(2): 153-6, 2005.
Artigo em Inglês | MEDLINE | ID: mdl-16033513

RESUMO

AIMS: To investigate the productivity and specificity of a new chromogenic enterococci selective medium (Chromocult enterococci agar) recently developed by Merck. METHODS AND RESULTS: The study was carried out comparing Chromocult enterococci agar with MRS agar (Merck), a basal lactic acid bacteria medium in current use. A total of 216 faecal samples from poultry were collected and enterococci populations were counted. Likewise, 100 randomly selected strains were identified for each medium. The differences found between the two media were analysed and discussed. CONCLUSIONS: A good sensitivity of 98% was obtained for Chromocult agar and all false-positive isolates obtained were identified as Leuconostoc spp. However significant differences (P<0.01) were obtained between the enterococci species isolation rates identified from these two media, suggesting the poor growth of some species in Chromocult enterococci agar. Viable counts of Enterococcus spp. obtained with MRS agar were significantly higher than those obtained with Chromocult enterococci agar. SIGNIFICANCE AND IMPACT OF THE STUDY: The use of chromogenic media for microbiological analysis is increasing. Independent studies are important to evaluate newly developed chromogenic media.


Assuntos
Galinhas/microbiologia , Meios de Cultura , Enterococcus/isolamento & purificação , Ágar , Animais , Contagem de Colônia Microbiana , Enterococcus/crescimento & desenvolvimento , Fezes/microbiologia , Sensibilidade e Especificidade
13.
J Ind Microbiol Biotechnol ; 30(12): 691-8, 2003 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-14634834

RESUMO

The cheese industry is seeking novel sources of enzymes for cheese production. Microbial rennets have several advantages over animal rennets. (1) They are easy to generate and purify and do not rely on the availability of animal material. (2) The production of microbial clotting enzymes may be improved by biotechnological techniques. In this work, the biochemical characterization of a novel milk-clotting extracellular enzyme from Myxococcus xanthus strain 422 and a preliminary evaluation of its cheese-producing ability are reported. Strain 422 was selected from four M. xanthus strains as the best producer of extracellular milk-clotting activity, based on both its enzyme yield and specific milk-clotting activity, which also afforded lower titration values than enzymes from the three other M. xanthus strains. The active milk-clotting enzyme from M. xanthus strain 422 is a true milk-clotting enzyme with a molecular mass of 40 kDa and a pI of 5.0. Highest milk-clotting activity was at pH 6 and 37 degrees C. The enzyme was completely inactivated by heating for 12 min at 65 degrees C. The crude enzyme preparation was resolved by anion-exchange chromatography into two active fractions that were tested in cheese production assays of compositional (dry matter, fat content, fat content/dry-matter ratio, and moisture-non-fat content) and physicochemical properties (firmness, tensile strength, pH and Aw) of the milk curds obtained. Purified protein fraction II exhibited a significantly higher milk-clotting ability than either protein fraction I or a total protein extract, underlining the potential usefulness of M. xanthus strain 422 as a source of rennet for cheese production.


Assuntos
Ácido Aspártico Endopeptidases/metabolismo , Queijo/microbiologia , Leite/metabolismo , Myxococcus xanthus/enzimologia , Animais , Quimosina/metabolismo , Fermentação , Microbiologia Industrial
14.
J Proteome Res ; 2(2): 127-35, 2003.
Artigo em Inglês | MEDLINE | ID: mdl-12716126

RESUMO

The state-of-the-art and future trends of the application of proteomics to seafood and other marine products are reviewed. Consumers' demands for seafood products have increased in the recent years and this situation has underlined the need to guarantee the safety, traceability, authenticity, and health benefits of such products. The increasing presence of commercially available aquaculture products has also prompted the seafood industry to face newer challenges. In this sense, a review of the present status and perspectives of the application of proteomics in the development of newer biotechnology products of marine origin is given.


Assuntos
Biologia Marinha/métodos , Proteômica/métodos , Alimentos Marinhos/análise , Alérgenos/análise , Controle de Qualidade , Alimentos Marinhos/normas , Toxinas Biológicas/análise
15.
Electrophoresis ; 22(8): 1545-52, 2001 May.
Artigo em Inglês | MEDLINE | ID: mdl-11386668

RESUMO

The Merluccidae family comprises marine species, some of them of high commercial value and others less appreciated, whose commercialization in Europe under the generic name of "hake" is highly remarkable. The potential of proteomics was employed in this study with the aim of achieving the differential characterization of five different hake species: Merluccius merluccius (European hake), M. australis (Southern hake), M. hubbsi (Argentinian hake), M. gayi (Chilean hake), and M. capensis (Cape hake), some of them very closely related. Species-specific polypeptides were observed for the five hake species studied in isoelectric focusing (IEF) and/or two-dimensional electrophoresis (2-DE) high-resolution gels. The peptide mass maps of two polypeptide groups, previously selected by 2-DE analysis as potentially species-specific, were obtained by "in-gel" tryptic digestion, followed by matrix assisted laser desorption/ ionization-time of flight-mass spectrometry (MALDI-TOF-MS). Analysis of group A polypeptides (with pI in the range of 5.0-5.5 and molecular mass of 17 kDa), allowed the differential classification of the hake species into two groups: the East Atlantic coast group and the West Atlantic coast group. Moreover, the peptide mass-maps from the heat-resistant parvalbumin fraction (pI below 4.5; molecular mass <12 kDa) allowed the detection of a peptide characteristic of M. australis not present in the other four hake species tested. A specific 17 kDa protein from M. merluccius was also partially sequenced by nanospray-ion trap-tandem MS, revealing a high homology with rat nucleoside diphosphate kinase A (NDKA). This work opens the way to the application of proteomics to the differential characterization of commercial hake species at the molecular level.


Assuntos
Peixes , Proteínas Musculares/análise , Núcleosídeo-Difosfato Quinase/análise , Peptídeos/análise , Retículo Sarcoplasmático/química , Sequência de Aminoácidos , Animais , Eletroforese em Gel Bidimensional/métodos , Peixes/classificação , Dados de Sequência Molecular , Análise de Sequência , Especificidade da Espécie , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos
16.
J Food Prot ; 63(2): 244-51, 2000 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-10678431

RESUMO

Histamine-producing bacteria were isolated from albacore stored at 0, 25, 30, and 37 degrees C. They were screened using Niven's differential medium, and their histamine production was confirmed by high-pressure liquid chromatography analysis. The optimum temperature for growth of histamine-producing bacteria was 25 degrees C. The bacterium producing the highest level of histamine was isolated from fish abused at 25 degrees C. It was identified as Morganella morganii by morphological, cultural, biochemical, and antimicrobial characteristics and by the Vitek microbial identification system. The M. morganii isolate was inoculated into tuna fish infusion broth medium, and the effect of temperature was determined for microbial growth and formation of histamine and other biogenic amines. The isolate produced the highest level of histamine, 5,253 ppm, at 25 degrees C in the stationary phase. At 15 degrees C, histamine production was reduced to 2,769 ppm. Neither microbial growth nor histamine formation was detected at 4 degrees C. To determine whether the isolate can also produce other biogenic amines that can potentiate histamine toxicity, production of cadaverine, putrescine, serotonin, tryptamine, tyramine, phenylethylamine, spermidine, and spermine by the isolate was also monitored. Cadaverine, putrescine, and phenylethylamine were detected with microbial growth in the tuna fish infusion broth medium. The optimum temperature for cadaverine, putrescine, and phenylethylamine formation was found to be 25 degrees C, as it was for histamine.


Assuntos
Aminas Biogênicas/biossíntese , Peixes/microbiologia , Histamina/biossíntese , Morganella morganii/metabolismo , Animais , Meios de Cultura , Morganella morganii/crescimento & desenvolvimento , Temperatura
17.
FEMS Microbiol Lett ; 181(2): 211-5, 1999 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-10585540

RESUMO

Total dsRNA extractions in five killer K2 strains of Saccharomyces cerevisiae isolated from spontaneous fermentations revealed the presence of a novel dsRNA fragment (which we named NS dsRNA) of approximately 1.30 kb, together with L and M2 dsRNAs. NS dsRNA appeared to be encapsidated in the same kind of viral particles as L and M2 dsRNA. Northern blot hybridization experiments indicated that NS dsRNA was derived from M2 dsRNA, likely by deletion of the internal A+U-rich region. However, unlike S dsRNAs (suppressive forms derived from M1 dsRNA in K1 killers), NS dsRNA did not induce exclusion of the parental M2 dsRNA when the host strain was maintained for up to 180 generations of growth.


Assuntos
RNA de Cadeia Dupla/isolamento & purificação , RNA Fúngico/isolamento & purificação , Saccharomyces cerevisiae/genética , Northern Blotting , Fermentação , Saccharomyces cerevisiae/crescimento & desenvolvimento , Vinho/microbiologia
18.
J Food Prot ; 62(8): 933-9, 1999 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-10456749

RESUMO

Two hundred twenty-seven bacterial strains were isolated from fresh and frozen albacore stored either at -18 or -25 degrees C and investigated for their abilities to produce biogenic amines. As a preliminary screening, all 227 strains were tested in either Niven or Niven modified medium, which allowed the selection of 25 presumptive histamine-producing strains. High-pressure liquid chromatography revealed that only 10 of the 25 strains selected were able to produce low histamine concentrations (<25 ppm) in tryptic soy broth medium supplemented with 2% histidine. None of the 25 strains tested produced putrescine or spermine, whereas 6 strains produced spermidine. Histamine production by Stenotrophomonas maltophilia strain 25MC6 was not prevented at 4 degrees C, and the levels of this amine reached concentrations of 25.8 ppm after 6 days. Three S. maltophilia strains showed strong lysine-decarboxylating activity. Their cadaverine formation capacity was determined by high-pressure liquid chromatography in tryptic soy broth supplemented with 1% lysine; this revealed that the three S. maltophilia strains tested produced more than 700 ppm of cadaverine during the first 24 h of incubation at 37 degrees C. S. maltophilia strain 15MF, initially obtained from fresh albacore tuna, produced up to 2,399 ppm and 4,820 ppm of cadaverine after 24 and 48 h of incubation at 37 degrees C, respectively. To our knowledge, this is the first report on histamine and cadaverine production by strains of the species S. maltophilia, previously known as Pseudomonas and Xanthomonas maltophilia, isolated from fresh and frozen albacore tuna.


Assuntos
Cadaverina/biossíntese , Bactérias Gram-Negativas/isolamento & purificação , Histamina/biossíntese , Atum/microbiologia , Animais , Aminas Biogênicas/biossíntese , Cromatografia Líquida de Alta Pressão , Manipulação de Alimentos/métodos , Congelamento , Bactérias Gram-Negativas/classificação , Bactérias Gram-Negativas/metabolismo , Pseudomonas/classificação , Pseudomonas/isolamento & purificação , Pseudomonas/metabolismo
19.
Electrophoresis ; 20(7): 1425-32, 1999 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-10424465

RESUMO

A collaborative study was carried out in seven European labs with the aim of achieving a sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) standard operation procedure to identify fish species in raw and cooked samples. Urea and SDS-containing solutions were evaluated as extractants. Several preelectrophoretic operations--such as treatment with RNase/DNase, ultrafiltration and desalting--and up to ten types of gels and three SDS-PAGE systems were considered. The SDS-containing solution allowed a higher protein extractability than urea. Unlike urea extraction, SDS extraction seemed not to be influenced so much by the state of the sample (raw, cooked at 60 degrees C, cooked at 85 degrees C). Desalting, ultrafiltration or treatment with RNase/DNase did not improve the discriminatory power of the protein patterns. Commercial homogeneous 15% ExcelGels, especially when they were silver stained, yielded good results and afforded higher reproducibility, thus allowing a better matching of results among the laboratories participating in this collaborative study. Under the optimized technical conditions described above, all the fish species tested, either raw and cooked, yielded reproducible and discriminant species-specific protein patterns.


Assuntos
Eletroforese em Gel de Poliacrilamida/métodos , Eletroforese/métodos , Produtos Pesqueiros , Peixes , Animais , Desoxirribonucleases/química , Análise de Alimentos , Valores de Referência , Ribonucleases/química , Sais/química , Temperatura , Ultrafiltração/métodos , Ureia/análise
20.
Int Microbiol ; 2(4): 217-26, 1999 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-10943417

RESUMO

Thermotolerant campylobacters, C. jejuni, C. coli, C. lari and C. upsaliensis, are spiral bacteria involved in human enteric disease. The prevalence of these emerging pathogens, mainly C. jejuni and to a lesser extent C. coli, as etiologic agents of enteric disease in industrialized countries has increased over the last decade. The isolation and culture of these microorganisms is tedious and time-consuming mainly due to their complex nutritional and environmental requirements. This review discusses the techniques and methods developed for the selective isolation of thermotolerant campylobacters from food, environmental and clinical samples. Additionally, both traditional and newer molecular biology techniques applied to this group of thermophilic organisms for typing and taxonomic purposes are summarized.


Assuntos
Técnicas de Tipagem Bacteriana , Infecções por Campylobacter/epidemiologia , Campylobacter/isolamento & purificação , Infecções Oportunistas Relacionadas com a AIDS/epidemiologia , Infecções Oportunistas Relacionadas com a AIDS/microbiologia , Adulto , Técnicas Bacteriológicas , Tipagem de Bacteriófagos , Campylobacter/classificação , Campylobacter/genética , Campylobacter/fisiologia , Infecções por Campylobacter/microbiologia , Criança , Pré-Escolar , Meios de Cultura , DNA Bacteriano/genética , DNA Bacteriano/isolamento & purificação , Metabolismo Energético , Enterite/epidemiologia , Enterite/microbiologia , Fezes/microbiologia , Contaminação de Alimentos , Microbiologia de Alimentos , Previsões , Genética Microbiana/métodos , Genótipo , Temperatura Alta , Humanos , Lactente , Sorotipagem , Especificidade da Espécie , Microbiologia da Água , Poluição da Água
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