Small groups in multidimensional feature space: Two examples of supervised two-group classification from biomedicine.

Some biomedical datasets contain a small number of samples which have large numbers of features. This can make analysis challenging and prone to errors such as overfitting and misinterpretation. To improve the accuracy and reliability of analysis in such cases, we present a tutorial that demonstrates a mathematical approach for a supervised two-group classification problem using two medical datasets. A tutorial provides insights on effectively addressing uncertainties and handling missing values without the need for removing or inputting additional data. We describe a method that considers the size and shape of feature distributions, as well as the pairwise relations between measured features as separate derived features and prognostic factors. Additionally, we explain how to perform similarity calculations that account for the variation in feature values within groups and inaccuracies in individual value measurements. By following these steps, a more accurate and reliable analysis can be achieved when working with biomedical datasets that have a small sample size and multiple features.

Nestin-GFP transgene labels immunoprivileged bone marrow mesenchymal stem cells in the model of ectopic foci formation.

Immune privileges are demonstrated for different types of quiescent stem cells of adult mammalian organisms. Mesenchymal stem cells (MSCs) are believed to have immune privileges; however, an accurate experimental confirmation hasn't been presented. Here, we provide direct experimental evidence that MSCs of C57Black/6J murine bone marrow (BM) are immune privileged in vivo and retain their functionality after prolonged exposure to the uncompromised immune system. The BM of Nes-Gfp transgenic mice was implanted as a tissue fragment under the kidney capsule in isogenic C57Black/6J immunocompetent recipients. Nestin-Gfp strain provides a fluorescent immunogenic marker for a small fraction of BM cells, including GFP+CD45- MSCs. Despite the exposure of xenogenically marked MSCs to the fully-functional immune system, primary ectopic foci of hematopoiesis formed. Six weeks after implantation, multicolor fluorescence cytometry revealed both GFP+CD45- and GFP+CD45+ cells within the foci. GFP+CD45- cells proportion was 2.0 × 10-5 ×÷9 and it didn't differ significantly from syngenic Nes-GFP transplantation control. According to current knowledge, the immune system of the recipients should eliminate GFP+ cells, including GFP+ MSCs. These results show that MSCs evade immunity. Primary foci were retransplanted into secondary Nes-GFP recipients. The secondary foci formed, in which CD45-GFP+ cells proportion was 6.7 × 10-5 ×÷2.2, and it didn't differ from intact Nes-GFP BM. The results demonstrate that MSCs preserve self-renewal and retain their functionality after prolonged immune exposure. The success of this study relied on the implantation of BM fragments without prior dissociation of cells and the fact that the vast majority of implanted cells were immunologically equivalent to the recipients.