Infrequent intrahousehold transmission of Clostridioides difficile between pet owners and their pets.

Companion animals have been shown to carry Clostridioides difficile strains that are similar or identical to strains found in people, and a small number of studies have shown that pets carry genetically identical C. difficile isolates as their owners, suggesting inter-species transmission. However, the directionality of transmission is ultimately unknown, and the frequency with which animals acquire C. difficile following their owners' infection is unclear. The goal of this study was to assess how often pets belonging to people with C. difficile infection carry genetically related C. difficile isolates. We enrolled pet owners from two medical institutions (University of Pennsylvania Health System (UPHS) and The Ohio State University Wexner Medical Center (OSUWMC)) who had diarrhoea with or without positive C. difficile assays and tested their faeces and their pets' faeces for C. difficile using both anaerobic culture and PCR assays. When microorganisms were obtained from both the owner and pet and had the same toxin profile or ribotype, isolates underwent genomic sequencing. Faecal samples were obtained from a total of 59 humans, 72 dogs and 9 cats, representing 47 complete households (i.e. where a sample was available from the owner and at least one pet). Of these, C. difficile was detected in 30 humans, 10 dogs and 0 cats. There were only two households where C. difficile was detected in both the owner and pet. In one of these households, the C. difficile isolates were of different toxin profiles/ribotypes (A+/B+ / RT 499 from the owner, A-/B- / RT PR22386 from the dog). In the other household, the isolates were genetically identical (one SNP difference). Interestingly, the dog from this household had recently received a course of antibiotics (cefpodoxime and metronidazole). Our findings suggest that inter-species transmission of C. difficile occurs infrequently in households with human C. difficile infections.

Early stool microbiome and metabolome signatures in pediatric patients undergoing allogeneic hematopoietic cell transplantation.

BACKGROUND: The contribution of the gastrointestinal tract microbiome to outcomes after allogeneic hematopoietic cell transplantation (HCT) is increasingly recognized. Investigations of larger pediatric cohorts aimed at defining the microbiome state and associated metabolic patterns pretransplant are needed. METHODS: We sought to describe the pretransplant stool microbiome in pediatric allogenic HCT patients at four centers. We performed shotgun metagenomic sequencing and untargeted metabolic profiling on pretransplant stool samples. Samples were compared with normal age-matched controls and by clinical characteristics. We then explored associations between stool microbiome measurements and metabolite concentrations. RESULTS: We profiled stool samples from 88 pediatric allogeneic HCT patients, a median of 4 days before transplant. Pretransplant stool samples differed from healthy controls based on indices of alpha diversity and in the proportional abundance of specific taxa and bacterial genes. Relative to stool from healthy patients, samples from HCT patients had decreased proportion of Bacteroides, Ruminococcaeae, and genes involved in butyrate production, but were enriched for gammaproteobacterial species. No systematic differences in stool microbiome or metabolomic profiles by age, transplant indication, or hospital were noted. Stool metabolites demonstrated strong correlations with microbiome composition. DISCUSSION: Stool samples from pediatric allogeneic HCT patients demonstrate substantial dysbiosis early in the transplant course. As microbiome disruptions associate with adverse transplant outcomes, pediatric-specific analyses examining longitudinal microbiome and metabolome changes are imperative to identify causal associations and to inform rational design of interventions.

Spectral signatures of inter-system crossing mediated by energetically distant doorway levels: examples from the acetylene S1 state.

We review recent research on the acetylene S(1) state that illustrates how mechanistic rather than phenomenological information about intersystem crossing (ISC) may be obtained directly from frequency-domain spectra. The focus is on the dynamically rich "doorway-mediated" ISC domain that lies between isolated spectroscopic spin-orbit perturbations and statistical-limit interactions between one singlet "bright state" and a quasi-continuum of triplet "dark states". New and improved experimental and data processing techniques permit the statistical-model curtain to be drawn back to reveal mechanistically explicit pathways via one or more identifiable, hence, manipulatable, doorway states, between a user-selected bright state and the undifferentiated bath of dark states.

Deconvolution of spectral data using a doorway-coupling model Hamiltonian.

The doorway-mediated mechanism for dynamical processes represents the first step beyond statistical dynamics toward an explicit mechanism. A bright state-->doorway state-->dark bath doorway-coupling model Hamiltonian characterizes the small molecule limit behavior of the doorway state in mediating the interaction with other dark states in the large molecule limit. Established methods of spectral deconvolution are extended to determine the parameters of a doorway-coupling model Hamiltonian from the energies and intensities of eigenstates in a high-resolution spectrum. The most important parameters of the Hamiltonian, including the doorway state energy and bright~doorway matrix element, may be computed directly from moments of the spectral intensity distribution. We demonstrate that these parameters can be recovered accurately even when some eigenstates are unresolved. The deconvolution procedure is applied to the spectrum of the 3nu(3) K(a)=1 vibrational level of S(1) acetylene, where a single, local, T(3) doorway level mediates coupling to the T(1,2) manifold. Previous studies of this S(1)~T(3) perturbation are discussed in light of the doorway state energies and matrix elements obtained by inversion of the spectral data.

Contrasting singlet-triplet dynamical behavior of two vibrational levels of the acetylene S1 2(1)3(1)B2 polyad.

Surface electron ejection by laser-excited metastables (SEELEM) and LIF spectra of acetylene were simultaneously recorded in the regions of the A1Au-X1Sigmag+ nominal 2(1)3(1)4(2) Ka=1<--00 and 2(1)3(1)6(2) Ka=1<--00 bands near 46,140 cm(-1). The upper states of these two bands are separated by only approximately 100 cm(-1), and the two S1 vibrational levels are known to be strongly mixed by anharmonic and Coriolis interactions. Strikingly different patterns were observed in the SEELEM spectra in the regions of the 2(1)3(1)4(2) and 2(1)3(1)6(2) vibrational levels. Because the equilibrium structure of the T3 electronic state is known to be nonplanar, excitation of nu4 (torsion) and nu6 (antisymmetric in-plane bend) are expected respectively to promote and suppress vibrational overlap between low-lying S1 and T3 vibrational levels. The nearly 50:50 mixed 2(1)3(1)4(2)-2(1)3(1)6(2) character of the S1 vibrational levels rules out this simple Franck-Condon explanation for the different appearance of the SEELEM spectra. A simple model is applied to the SEELEM/LIF spectra to explain the differences between spectral patterns in terms of a T3 doorway-mediated singlet-triplet coupling model.

Angle-energy distributions of Penning ions in crossed molecular beams. IV. He*(21 S,2 3S)+H2-->He+H2+ +e-.

Relative doubly differential cross sections for the Penning ionization of H(2) by spin-state-selected metastable He (1s2s) are reported at center-of-mass collision energies E of 3.1 and 4.2 kcal/mol in a crossed supersonic beam experiment employing a rotatable mass spectrometer detector. The measurements are sufficiently dense in velocity space as to avoid having to functionalize the differential cross sections in order to transform the intensities into the c.m. The H(2) (+) product is scattered sharply forward, c.m. Deltatheta<10 degrees half-width at half-maximum, with respect to the incident direction of H(2) at both energies for both spin states. On the average the products have lost energy upon recoil, mean recoil energy E(')