Simulation of cosmic rays inside an aircraft: spectral perturbation and dose reduction due to aircraft structures and contents.

In this study, an intricate combinatorial geometry model of a Boeing 777-300ER aircraft was constructed for Monte Carlo transport simulations. The aircraft-induced perturbations of the energy spectra and effective doses of secondary cosmic rays at a typical civil aviation altitude (10 km) were investigated on a component-by-component basis, which included neutrons, protons, photons, electrons, positrons, muons and charged pions. Two geomagnetic cutoff rigidities (1.35 and 15.53 GV) and two solar modulation parameters (430 and 1360 MV) were considered in the aforementioned simulations. The characteristics of various cosmic-ray components at six locations along the fuselage were assessed and compared with those of an unperturbed radiation field in the atmosphere. Aircraft structures and contents reduced the effective doses of personnel inside the aircraft to varying degrees, up to an ~32% reduction in the middle section of the passenger cabin. On average, the dose reduction was ~12-16% depending on geomagnetic and solar conditions. Quantifying the aircraft's self-shielding effects can further improve the estimation accuracy of aircrew and passengers' exposure to cosmic radiation. Information regarding the perturbed energy spectra of cosmic rays may be useful for designing onboard experiments or analyzing onboard measurement data.

First report of human infection with avian influenza A(H9N2) virus in Oman: The need for a One Health approach.

Following the detection of the first human case of avian influenza A subtype H9N2 in 1998, more than 40 cases were diagnosed worldwide. However, the spread of the virus has been more remarkable and significant in global poultry populations, causing notable economic losses despite its low pathogenicity. Many surveillance studies and activities conducted in several countries have shown the predominance of this virus subtype. We present the case of a 14-month-old female in Oman with an A(H9N2) virus infection. This is the first human case of A(H9N2) reported from Oman and the Gulf Cooperation Countries, and Oman is the second country outside of southern and eastern Asia to report a case (cases have also been detected in Egypt). The patient had bronchial asthma and presented with a high-grade temperature and symptoms of lower respiratory tract infection that necessitated admission to a high dependency unit in a tertiary care hospital. It is of urgency that a multisector One Health approach be established to combat the threat of avian influenza at the animal-human interface. In addition to enhancements of surveillance and control in poultry, there is a need to develop screening and preventive programs for high-risk occupations.

Simple and fast approach to exploit the spectral reflection properties of liquid media.

Bidirectional reflectance distribution functions (BRDFs) are of importance for their wide applications. In this study, we presented a simple and fast approach to measure the spectral BRDF of both solid and liquid samples. Based on this approach, we fabricated a prototype and measured the BRDF value of some liquid samples such as water and NaCl solution at different wavelengths. According to the experimental data, we discussed the trend of the BRDF value of the NaCl solution of different concentrations. Then, the experimental data of the different NaCl solution at 637 nm were used to invert the parameters of a five-parameter model. Additionally, we fitted the parameters as a polynomial.

Recent Progress of Imprinted Polymer Photonic Waveguide Devices and Applications.

Polymers are promising materials for fabricating photonic integrated waveguide devices. Versatile functional devices can be manufactured using a simple process, with low cost and potential mass-manufacturing. This paper reviews the recent progress of polymer photonic integrated devices fabricated using the UV imprinting technique. The passive polymer waveguide devices for wavelength filtering, power splitting, and light collecting, and the active polymer waveguide devices based on the thermal-optic tuning effect, are introduced. Then, the electro-optic (EO) modulators, by virtue of the high EO coefficient of polymers, are described. Finally, the photonic biosensors, which are based on low-cost and biocompatible polymer platforms, are presented.

Taxanes from Taxus wallichiana var. mairei cultivated in the southern area of the Yangtze River in China.

A new and 25 known taxane diterpenoids were isolated from the dried whole plants of Taxus wallichiana var. mairei cultivated in the southern area of the Yangtze River in China. The chemical structure of new compound 1, named taxiwallinine, was established by means of MS and NMR analyses. Among the 25 known taxane compounds 2-26, compounds 10, 12, 14, 15, 17 and 21-23 were first isolated from this plant. Taxiwallinine and taxol were screened for the cytotoxic effect on human breast cancer cell line MCF-7 with IC50 values of 20.898 µg/mL and 0.008 µg/mL, respectively. Taxiwallinine showed moderate cytotoxicity to this cell line. These results demonstrate that T. wallichiana var. mairei cultivated in the southern area of the Yangtze River in China could be a renewable resource for extracting the taxane derivatives and the new compound, taxiwallinine, could be a potential anti-tumour product.

Protective effects of carnosine on white matter damage induced by chronic cerebral hypoperfusion.

Carnosine is a dipeptide that scavenges free radicals, inhibits inflammation in the central nervous system, and protects against ischemic and hypoxic brain damage through its anti-oxidative and anti-apoptotic actions. Therefore, we hypothesized that carnosine would also protect against white matter damage caused by subcortical ischemic injury. White matter damage was induced by right unilateral common carotid artery occlusion in mice. The animals were treated with 200, 500 or 750 mg/kg carnosine by intraperitoneal injection 30 minutes before injury and every other day after injury. Then, 37 days later, Klüver-Barrera staining, toluidine blue staining and immunofluorescence staining were performed. Carnosine (200, 500 mg/kg) substantially reduced damage to the white matter in the corpus callosum, internal capsule and optic tract, and it rescued expression of myelin basic protein, and alleviated the loss of oligodendrocytes. However, carnosine at the higher dose of 750 mg/kg did not have the same effects as the 200 and 500 mg/kg doses. These findings show that carnosine, at a particular dose range, protects against white matter damage caused by chronic cerebral ischemia in mice, likely by reducing oligodendroglial cell loss.

17-Dimethylaminoethylamino-17-demethoxygeldanamycin attenuates inflammatory responses in experimental stroke.

Heat shock protein 90 (HSP90) is a ubiquitous molecular chaperone involved in the proper conformation of many proteins. HSP90 inhibitors (17-dimethyl aminoethylamino-17-demethoxygeldanamycin hydrochloride [17-DMAG]) bind to and inactivate HSP90, suppressing some key signaling pathways involved in the inflammatory process. Since considerable evidence suggests that inflammation accounts for the progression of cerebral ischemic injury, we investigated whether 17-DMAG can modulate inflammatory responses in middle cerebral artery occluded (MCAO) mice. Male C57/BL6 mice were pretreated with 17-DMAG or vehicle for 7 d before being subjected to transient occlusion of middle cerebral artery and reperfusion. Mice were evaluated at 24 h after MCAO for neurological deficit scoring. Moreover, the mechanism of the anti-inflammatory effect of 17-DMAG was investigated with a focus on nuclear factor kappa B (NF-κB) pathway. 17-DMAG significantly reduced cerebral infarction and improved neurological outcome. 17-DMAG suppressed activation of microglia and decreased phosphorylation of inhibitory (I)κB and subsequent nuclear translocation of p65, which eventually downregulated expression of NF-κB-regulated genes. These results suggest that 17-DMAG has a promising therapeutic effect in ischemic stroke treatment through an anti-inflammatory mechanism.

[Polymorphism analysis of Plasmodium falciparum histidine-rich protein II and III].

OBJECTIVE: To analyze the polymorphism of Plasmodium falciparum histidine-rich protein (PfHRP) II and III. METHODS: Genomic DNA was isolated from blood samples of 20 patients infected with Plasmodium falciparum in Yunnan Province. Blood samples were tested by microscopy and RDTs. The Pfhrp2 and Pfhrp3 gene fragments were amplified by PCR and sequenced. The sequencing results were analyzed and compared using the bioinformatics software. RESULTS: 20 patients infected with Plasmodium falciparum tested by microscopy and RDTs. PCR showed that the Pfhrp2 gene was with 389~986 bp, and Pfhrp3 gene with 329-640 bp. All PfH-IRP II sequences started with type 1 repeat (AHHAHHVAD) and ended with the type 12 repeat (AHHAAAHHEAATH). The number of type 7 (AHHAAD), type 2 (AHHAHHAAD) and type 6 (AHHATD) within PfHRP II was more than the other types of repeats, as well as type 16 (AHHAAN) and type 17 (AHHDG) for PfHRP III. Type 11 repeat (AHN) was not found from the PfHRP II and PfHRP III sequences. CONCLUSION: There is an extensive diversity in Pfhrp2 and Pfhrp3 fragments in the individuals infected with P. falciparum in Yunnan. Some types of repeats are shared by PfHRP II and PfHRP III.

[Observation on dynamic changes of SEA specific antibody in sera of BALB/c mice infected with Schistosoma japonicum].

OBJECTIVE: To investigate the dynamic changes of SEA-induced specific IgG, IgM in sera of BALB/c mice infected with Schistosoma japonicum in 18 weeks. METHODS: After mice were infected with S. japonicum cercarial for 2 weeks, the sera were collected from 2 to 18 weeks post-infection. The serum levels of SEA-specific IgG and IgM antibodies were measured respectively by ELISA, and the different fractions of IgG and IgM antibodies were identified by the Western blotting method. RESULTS: The ELISA results showed that the serum levels of SEA-specific IgG increased 5, 6, 9, 11 week, after the infection, and SEA-specific IgM increased obviously 5, 9 weeks after the infection. The Western blotting results showed that 140, 180 kDa molecules were recognized by IgG antibodies in the mouse sera 4 weeks after the infection. The specific IgG antibodies of 43, 50 kDa antigens appeared 5 weeks after the infection. 60-130 kDa fractions were recognized by IgG in the sera 6 weeks post-infection, and 38, 73 kDa proteins were recognized by IgG in the sera 9 weeks post-infection. The IgG antibodies of 26, 32, 35, 80 kDa molecules appeared 11 weeks post-infection and reacted strongly 12 weeks post-infection. The IgM antibodies of 100, 140, 180 kDa molecules appeared 3 weeks after the infection, and 73 kDa protein was recognized by sera 6 weeks after the infection, but the reaction became strong 9 weeks after the infection. The 38, 43, 50 kDa proteins induced IgM antibodies in 9-week-infection sera and the reaction became stronger 9 weeks after the infection. CONCLUSIONS: There is a dynamic change in the levels of specific IgG and IgM antibodies induced by S. japonica SEA and the appearance of the antibodies is related to different infection stages. The 43, 50, 10, 140, 180 kDa antigens might have the potential value of early immunodiagnosis. The 73 kDa antigen shows high diagnostic value in both acute and chronic schistosomiasis. The 28, 32, 35, 38, 80 kDa antigens are not only the diagnostic molecules for chronic schistosomiasis, but they may also have therapeutic effects, and in addition, they may be the candidate vaccines of the disease.

[Phosphate adsorption characteristics on the desert particulates of inflow Yellow River].

Adsorption behaviors of phosphate on the desert particulates of inflow Yellow River were investigated in natural water (river water and sea water) and the experimental data was fitted by both the improved Langmuir and Freundlich isotherm adsorption models. The results show that (1) With more clear physical meaning and more reasonable fitting parameters, the improved Langmuir isotherm adsorption model is much better for describing phosphate adsorption on the desert particulates than the improved Freundlich isotherm adsorption model; (2) The maximum phosphorus (P) adsorption capacity Qmac is in the range of 41.322-357.143 mg x kg(-1), which is the biggest in Y2 (Juyanhai Lake particulates). There is remarkable positive correlation between Qmax and organic matter of the particulates (Y1-Y5); (3) Except for Y1 (Badain Jaran Desert particulates), the EPC0 (zero equilibrium P concentration) of the particulates are higher than the concentration of P in corresponding water. The EPC0 of P adsorption on Y1 in Yellow River is lower than P concentration in corresponding water (0.010 mg x L(-1) < 0.053 mg x L(-1)), while the EPC0 of P adsorption on Y1 in Bohai Sea water is higher than the P concentration in their corresponding water (0.109 mg x L(-1) > 0.074 mg x L(-1)), which shows that Y1 adsorbs P from the water of the Yellow River, then it releases its NAP (native adsorbed exchangeable phosphorus) into Bohai Seawater. However, in the process of the P exchange between other desert particulates and their corresponding water, only desorption phenomenon were observed, which means all other desert particulates release P to their corresponding water; (4) The adsorption isotherms of phosphate on the desert particulates of inflow Yellow River are cross-axis-type with over 0.00, a new cross-axis-type adsorption-desorption model, which provide a better explanation for adsorption characteristics of P and for the dual role of natural particulates.

[Physical-chemical characteristics and phosphorus speciation of the sediments in the upper and middle reaches of the Yellow River].

The physical and chemical characteristics, various phosphorus forms from 10 sites in Yellow River's sediments were analyzed, and their relations were discussed. The results showed that, the values of total phosphorus, organic matter and active Fe, Al are 97.86-129.33 mg x kg(-1), 0.11%-1.96%, 2.02-7.40 mg x g(-1), 0.29-0.90 mg x g(-1), respectively. The main mineral compositions of the sediments are quartz and albite; the main clay minerals are montmorillonate, illite, chlorite and kaolinite. Inorganic-P is the main form of phosphorus speciation. Ca-P is 37.61-64.04 mg x kg(-1) and is the main form of IP. The cation exchange capacity was linearly correlated with the sum of clay and silt (R2 = 0.76). Also, the organic matter was linearly correlated with inorganic sedimentary phosphorus (R2 = 0.66). Moreover, the linear relationship between the sum of NaOH-P and BD-P and the sum of active Fe and active Al content was observed within the ten sediments investigated (R2 = 0.80).

[Characteristics of phosphorus sorption on Yellow River sediments from Inner Mongolia reach].

Sorption behavior of phosphorus on sediment samples taken from Inner Mongolia reach of the Yellow River in 6 different geographical sites was determined in laboratory, and the correlation between chemical-physical properties of the sediments and their phosphorus sorption characteristics was analyzed. The maximum sorption capacities were 43.64-85.46 mg/kg. The zero equilibrium P concentration (EPC0) of the sediments ranged from 0.0003 to 0.0198 mg/L, which was positively correlated to the contents of native adsorbed P (NAP). The sediments played a dual role of sink and source of P at different geographical sites. Sediments from Shizuishan, Wulateqianqi and Qingshuihe along the Yellow River were sources of phosphorus, while sediments from Wuhai, Linhe and Baotou cross sections were sinks of phosphorus, at the typical P concentrations of the river water. However, both the sorption and desorption capacities were low at the conditions tested here. The Langmuir sorption constant (k) was positively correlated to the cation exchange capacity (CEC), organic matter and clay mineral content, but negatively correlated to the particle size of the sediments. The maximum sorption capacity of phosphorus was remarkably correlated to the active Fe content. Active Fe played a key role in holding phosphorus on the sediments.

Sys-BodyFluid: a systematical database for human body fluid proteome research.

Recently, body fluids have widely become an important target for proteomic research and proteomic study has produced more and more body fluid related protein data. A database is needed to collect and analyze these proteome data. Thus, we developed this web-based body fluid proteome database Sys-BodyFluid. It contains eleven kinds of body fluid proteomes, including plasma/serum, urine, cerebrospinal fluid, saliva, bronchoalveolar lavage fluid, synovial fluid, nipple aspirate fluid, tear fluid, seminal fluid, human milk and amniotic fluid. Over 10,000 proteins are presented in the Sys-BodyFluid. Sys-BodyFluid provides the detailed protein annotations, including protein description, Gene Ontology, domain information, protein sequence and involved pathways. These proteome data can be retrieved by using protein name, protein accession number and sequence similarity. In addition, users can query between these different body fluids to get the different proteins identification information. Sys-BodyFluid database can facilitate the body fluid proteomics and disease proteomics research as a reference database. It is available at http://www.biosino.org/bodyfluid/.

[Phosphate sorption characteristics onto sediments in the middle and lower reaches of the Yellow River].

The equilibrium phosphate concentration (EPC0) of the Yellow River bed sediments has been measured, which was used to predict whether bed sediments are acting as a source or sink of soluble reactive phosphate (SRP). The modified Langmuir isotherm equation was used to describe phosphate (P) sorption on the Yellow River sediments. The maximum P sorption capacity (PAC) and P-binding energy constant (k) were obtained by the modified Langmuir isotherm model. Native adsorbed exchangeable phosphorus (NAP), the EPC0, and partitioning coefficients (Kp) were subsequently calculated by the corresponding formulae. The influence of pH values and ion strength were evaluated. All the EPC0 s are higher than the P concentration in the overlying water, indicating a potential source of phosphate from the sediments. PAC is linearly related to the contents of TOC of the sediment. The sorption capacity of P increased rapidly with pH below 6.0, and then reached a plateau between pH 6.0 to 9.7, and finally maintained at a slightly higher level from pH 9.7 to 12.0.The adsorption of P by the sediment decreased with the increase in Ca2+ ionic strength.

Leptin-directed embryo implantation: leptin regulates adhesion and outgrowth of mouse blastocysts and receptivity of endometrial epithelial cells.

Leptin is a 16-kDa multifunctional protein. Recent reports indicate that leptin is an important molecule during implantation and placentation, implicated in embryonic-maternal cross-talk and cytotrophoblast invasiveness, however, the role of leptin playing in the process of normal blastocyst implantation has not been well characterized. In the present study, the possible mechanisms of leptin playing in mouse blastocyst implantation were investigated. Leptin and receptor isoforms mRNAs were detected in whole mouse uteri during estrous cycle and peri-implantation periods. Immunofluorescent analysis further confirmed Ob-R protein was present in mouse uterus. The differential amounts of leptin and Ob-R isoforms suggested a role for leptin in such endometrial issues as blastocyst implantation. In vitro culture model for studying embryo implantation, leptin promoted mouse blastocyst adhesion and blastocyst outgrowth on fibronectin. Blastocysts treated with 300 ng/ml leptin had the greatest adhesion rate of 76.58+/-6.41% (P=0.046), and blastocysts treated with 30 ng/ml leptin had the greatest outgrowth rate of 78.64+/-8.48% (P=0.005). In isolated endometrial epithelial cells, leptin upregulated amounts of alpha v and beta 3 integrin, and promoted cell adhesion to such extracellular matrix proteins as fibronectin, laminin and type IV collagen, showing a dose- and time-dependent cell-adhesive capacity. Collectively, the information from the present study may partly account for leptin-induced mouse blatocyst implantation.

MPSS: an integrated database system for surveying a set of proteins.

SUMMARY: We design and implement an integrated database system called 'multi-protein survey system' (MPSS), which provides a platform to retrieve information about many proteins at a time. This system integrates several important and widely used databases including SwissProt, TrEMBL, PDB and InterPro, plus useful references such as GO and KEGG to other databases. Users may submit a group of protein IDs, entry names, SwissProt/TrEMBL accession numbers or GenBank GIs through MPSS' web interface, and obtain protein annotation information from public databases and pre-computed molecular properties speedily. MPSS can also supply comprehensive information about query proteins, including 3D structures, domains, pathway, gene ontology and visual presentation of mapping to the GO tree and KEGG pathway, to provide an up-to-date view of available knowledge with regard to the structures and molecular functions of proteins under study. AVAILABILITY: MPSS is freely accessible at http://www.scbit.org/mpss/

[Adsorption behaviors of herbicide glyphoste on soils].

The adsorption behaviors of herbicide glyphoste on three soils were studied. The influence of pH value and ion strength on adsorption was discussed. It was shown that the adsorption dynamic process of glyphoste on three soils all was first order reaction, and the adsorption isotherms all were linear, adsorption coefficients Kd ranged from 2.2207-3.5280 mL x g(-1). The adsorption percentage of glyphoste on three soils increased with the ionic strength decrease. The adsorption percentage of glyphoste on the Huhhot soil and Dongsheng soil increased with pH value gradually decrease (9-3), and the adsorption percentage of the Hangjing 2 soil early increased and late decreased with pH value gradually decrease (9-3).

Putative hAPN receptor binding sites in SARS_CoV spike protein.

AIM: To obtain the information of ligand-receptor binding between the S protein of SARS-CoV and CD13, identify the possible interacting domains or motifs related to binding sites, and provide clues for studying the functions of SARS proteins and designing anti-SARS drugs and vaccines. METHODS: On the basis of comparative genomics, the homology search, phylogenetic analyses, and multi-sequence alignment were used to predict CD13 related interacting domains and binding sites in the S protein of SARS-CoV. Molecular modeling and docking simulation methods were employed to address the interaction feature between CD13 and S protein of SARS-CoV in validating the bioinformatics predictions. RESULTS: Possible binding sites in the SARS-CoV S protein to CD13 have been mapped out by using bioinformatics analysis tools. The binding for one protein-protein interaction pair (D757-R761 motif of the SARS-CoV S protein to P585-A653 domain of CD13) has been simulated by molecular modeling and docking simulation methods. CONCLUSION: CD13 may be a possible receptor of the SARS-CoV S protein, which may be associated with the SARS infection. This study also provides a possible strategy for mapping the possible binding receptors of the proteins in a genome.