An unusual ionic cocrystal of ponatinib hydrochloride: characterization by single-crystal X-ray diffraction and ultra-high field NMR spectroscopy.

This study describes the discovery of a unique ionic cocrystal of the active pharmaceutical ingredient (API) ponatinib hydrochloride (pon·HCl), and characterization using single-crystal X-ray diffraction (SCXRD) and solid-state NMR (SSNMR) spectroscopy. Pon·HCl is a multicomponent crystal that features an unusual stoichiometry, with an asymmetric unit containing both monocations and dications of the ponatinib molecule, three water molecules, and three chloride ions. Structural features include (i) a charged imidazopyridazine moiety that forms a hydrogen bond between the ponatinib monocations and dications and (ii) a chloride ion that does not feature hydrogen bonds involving any organic moiety, instead being situated in a "square" arrangement with three water molecules. Multinuclear SSNMR, featuring high and ultra-high fields up to 35.2 T, provides the groundwork for structural interpretation of complex multicomponent crystals in the absence of diffraction data. A 13C CP/MAS spectrum confirms the presence of two crystallographically distinct ponatinib molecules, whereas 1D 1H and 2D 1H-1H DQ-SQ spectra identify and assign the unusually deshielded imidazopyridazine proton. 1D 35Cl spectra obtained at multiple fields confirm the presence of three distinct chloride ions, with density functional theory calculations providing key relationships between the SSNMR spectra and H⋯Cl- hydrogen bonding arrangements. A 2D 35Cl → 1H D-RINEPT spectrum confirms the spatial proximities between the chloride ions, water molecules, and amine moieties. This all suggests future application of multinuclear SSNMR at high and ultra-high fields to the study of complex API solid forms for which SCXRD data are unavailable, with potential application to heterogeneous mixtures or amorphous solid dispersions.

An Unusual Macrocyclic Hexamer of an Iso-Tellurazole N-Oxide Featuring CTe O Chalcogen Bonds is Formed by κ6 -O Complexation to Fe(II) and Ni(II).

Studies of the supramolecular chemistry of iso-tellurazole N-oxides have been confined to non-polar media until now. To overcome that limitation, an iso-tellurazole N-oxide was derivatized with a primary alcohol group; the compound is soluble in polar solvents and stable in acidic to neutral aqueous media. Nickel (II) and iron (II) form macrocyclic complexes with six molecules of that iso-tellurazole N-oxide in a hitherto not-observed macrocyclic arrangement defined by CTe⋅⋅⋅O chalcogen bonds and κ6 -O bound to the metal ion. This behaviour is in sharp contrast with the κn -Te (n=1,2,4) complexes formed by soft metal ions.

A comparison of the coordination behaviour of R2PCH2BMe2 (R = Me vs. Ph) ambiphilic ligands with late transition metals.

A new synthesis that avoids the use of Me2PH is reported for (Me2PCH2BMe2)2, and this method was extended to the synthesis of (Ph2PCH2BMe2)2. The ligand precursor (Me2PCH2BMe2)2 did not react with [{M(µ-Cl)(cod)}2] (cod = 1,5-cyclooctadiene; M = Ir and Rh) or [PtCl2(cod)] at room temperature. However, after 12-48 hours at 65-70 °C, these reactions afforded (a) [Ir(cod)(µ-Cl)(Me2PCH2BMe2)] (1), (b) an equilibrium mixture of (Me2PCH2BMe2)2, [{Rh(µ-Cl)(cod)}2] and [Rh(cod)(µ-Cl)(Me2PCH2BMe2)] (2), and (c) cis-[Pt(µ-Cl)2(Me2PCH2BMe2)2] (3), respectively. By contrast, reactions between the phenyl-substituted analogue, (Ph2PCH2BMe2)2, and [{M(µ-Cl)(cod)}2] (cod = 1,5-cyclooctadiene; M = Ir and Rh) proceeded over the course of 1 hour at 20 °C to generate [M(cod)(µ-Cl)(Ph2PCH2BMe2)] (M = Ir (4) and Rh (5)), indicative of room temperature (Ph2PCH2BMe2)2 dissociation. Room temperature reactions of (Ph2PCH2BMe2)2 with [{Rh(µ-Cl)(coe)2}2] (coe = cyclooctene) using a 1 : 1 or 3 : 1 stoichiometry also afforded [{Rh(coe)(µ-Cl)(Ph2PCH2BMe2)}2] (6) or [RhCl(Ph2PCH2BMe2)3] (7), respectively, where the latter is a borane-appended analogue of Wilkinson's catalyst, and reactions of (Ph2PCH2BMe2)2 with [PtX2(cod)] (X = Cl or Me) yielded cis-[Pt(µ-Cl)2(Ph2PCH2BMe2)2] (8) and cis-[PtMe2(Ph2PCH2BMe2)2] (9). Compounds 1-9, (Me2PCH2BMe2)2 and (Ph2PCH2BMe2)2 were crystallographically characterized. In compounds 1-5 and 8, each chloride co-ligand is coordinated by the borane of an R2PCH2BMe2 ligand. Additionally, in the solid state structure of 6, each bridging chloride ligand interacts weakly with a pendent borane, and in 7, the chloride ligand is tightly coordinated to the borane of one Ph2PCH2BMe2 ligand and weakly coordinated to the borane of a second Ph2PCH2BMe2 ligand. By contrast, both boranes in 9 (and one of the three boranes in 7) are non-coordinated.

Reactions of [(dmpe)2MnH(C2H4)] with hydrogermanes to form germylene, germyl, hydrogermane, and germanide complexes.

Reactions of the ethylene hydride complex trans-[(dmpe)2MnH(C2H4)] (1) with secondary hydrogermanes H2GeR2 at 55-60 °C afforded the base-free terminal germylene hydride complexes trans-[(dmpe)2MnH(GeR2)] (R = Ph; 2a, R = Et; 2b). Room temperature reactions of 2a or 2b with an excess of the primary hydrogermanes H3GeR' (R' = Ph or nBu) afforded trans-[(dmpe)2MnH(GeHR')] (R' = Ph; 3a, R' = nBu; 3b) in rapid equilibrium with small amounts of 2a/b, as well as the digermyl hydride complex mer-[(dmpe)2MnH(GeH2R')2] {R' = Ph (4a) or nBu (4b)} and the trans-hydrogermane germyl complex trans-[(dmpe)2Mn(GeH2R')(HGeH2R')] {R' = Ph (5a) or nBu (5b)}. Pure 3b was isolated from the reaction of 2b with H3GenBu, whereas 3a decomposed readily in solution in the absence of free H3GePh, and a pure bulk sample was not obtained. Reactions of 1 with H3GeR' (R' = Ph or nBu) also proceeded at 55-60 °C to afford mixtures of 3a/b, 4a/b and 5a/b, accompanied by remaining 1. However, upon continued heating to consume 1, various unidentified manganese-containing intermediates were formed, ultimately affording the germanide complex [{(dmpe)2MnH}2(µ-Ge)] (6) in 17-49% spectroscopic yield. Pure trans,trans-6 was isolated in 27% yield from the reaction of 1 with H3GenBu, and it is notable that this reaction involves stripping of all four substituents from the hydrogermane. Complexes 2a, 3a, and 6 were crystallographically characterized, and the nature of the MnGe bonding in these species (as well as in 2b and 3b) was probed computationally.

Uranium(iv) alkyl cations: synthesis, structures, comparison with thorium(iv) analogues, and the influence of arene-coordination on thermal stability and ethylene polymerization activity.

Reaction of [(XA2)U(CH2SiMe3)2] (1; XA2 = 4,5-bis(2,6-diisopropylanilido)-2,7-di-tert-butyl-9,9-dimethylxanthene) with 1 equivalent of [Ph3C][B(C6F5)4] in arene solvents afforded the arene-coordinated uranium alkyl cations, [(XA2)U(CH2SiMe3)(η n -arene)][B(C6F5)4] {arene = benzene (2), toluene (3), bromobenzene (4) and fluorobenzene (5)}. Compounds 2, 3, and 5 were crystallographically characterized, and in all cases the arene is π-coordinated. Solution NMR studies of 2-5 suggest that the binding preferences of the [(XA2)U(CH2SiMe3)]+ cation follow the order: toluene ≈ benzene > bromobenzene > fluorobenzene. Compounds 2-4 generated in C6H5R (R = H, Me or Br, respectively) showed no polymerization activity under 1 atm of ethylene. By contrast, 5 and 5-Th (the thorium analogue of 5) in fluorobenzene at 20 and 70 °C achieved ethylene polymerization activities between 16 800 and 139 200 g mol-1 h-1 atm-1, highlighting the extent to which common arene solvents such as toluene can suppress ethylene polymerization activity in sterically open f-element complexes. However, activation of [(XA2)An(CH2SiMe3)2] {M = U (1) or Th (1-Th)} with [Ph3C][B(C6F5)4] in n-alkane solvents did not afford an active polymerization catalyst due to catalyst decomposition, illustrating the critical role of PhX (X = H, Me, Br or F) coordination for alkyl cation stabilization. Gas phase DFT calculations, including fragment interaction calculations with energy decomposition and ETS-NOCV analysis, were carried out on the cationic portion of 2'-Th, 2', 3' and 5' (analogues of 2-Th, 2, 3 and 5 with hydrogen atoms in place of ligand backbone methyl and tert-butyl groups), providing insight into the nature of actinide-arene bonding, which decreases in strength in the order 2'-Th > 2' ≈ 3' > 5'.

Coordination chemistry and structural rearrangements of the Me2PCH2AlMe2 ambiphilic ligand.

Reaction of 2 equivalents of (Me2PCH2AlMe2)2 with [{RhCl(cod)}2] (cod = 1,5-cyclooctadiene) afforded [{κ2P,P-(Me3Al)ClMeAl(CH2PMe2)2}Rh(cod)] (1), which features a κ2-coordinated bis(phosphino)aluminate anion. In compound 1, an Al-Cl substituent bridges to a molecule of AlMe3, which could be removed in vacuo to provide [{κ2P,P-ClMeAl(CH2PMe2)2}Rh(cod)] (2). By contrast, reaction of 1 equiv. of (Me2PCH2AlMe2)2 with [{RhCl(cod)}2] yielded [Rh(cod)(µ-Cl)(Me2PCH2AlMe2)] (3) as the major product, where the phosphine donor of an intact Me2PCH2AlMe2 ligand is coordinated to rhodium and a chloride ligand bridges between Rh and Al. [Rh(cod)(µ-Cl)(Me2PCH2AlClMe)] (3A) and 2 were also formed as minor products. The aforementioned reactions were carried out in benzene or toluene, whereas the 1 : 1 reaction of (Me2PCH2AlMe2)2 with [{RhCl(cod)}2] in THF afforded [{Rh(µ-CH2PMe2)(cod)}2] (4). Reactions of (Me2PCH2AlMe2)2 with iridium(I), gold(I) and platinum(II) precursors were also explored. A 1 : 1 reaction of (Me2PCH2AlMe2)2 with [{IrCl(cod)}2] afforded [{κ2P,P-Cl2Al(CH2PMe2)2}Ir(cod)] (5) as one of two major phosphine-containing products; unlike 3, this compound features two chlorine substituents on aluminium. For comparison, the rhodium analogue of 5, [{κ2P,P-Cl2Al(CH2PMe2)2}Rh(cod)] (6), was also synthesized via the 1 : 1 reaction of {ClAl(CH2PMe2)2}2 with [{RhCl(cod)}2]. Reactions of (Me2PCH2AlMe2)2 with [AuCl(CO)] or [PtCl2(cod)] also resulted in chloride-methyl group exchange between the transition metal and aluminium. However, these reactions generated free (Me2PCH2AlClMe)2 accompanied by gold and ethane, or [PtMe2(cod)], respectively. Reaction of 1.5 equivalents of (Me2PCH2AlMe2)2 with [PtMe2(cod)] at 75 °C afforded zwitterionic [(PtMe{µ-κ1P:κ2P,P-MeAl(CH2PMe2)3})2] (7) which features two tris(phosphino)aluminate anions bridging between PtMe units. Compounds 1-2, 3/3A, 4-7 and (Me2PCH2AlClMe)2 were crystallographically characterized.

Three-Dimensional Structure and Optimization of the Metallo-ß-Lactamase Inhibitor Aspergillomarasmine A.

The aminopolycarboxylic acid aspergillomarasmine A (AMA) is a natural Zn2+ metallophore and inhibitor of metallo-ß-lactamases (MBLs) which reverses ß-lactam resistance. The first crystal structure of an AMA coordination complex is reported and reveals a pentadentate ligand with distorted octahedral geometry. We report the solid-phase synthesis of 23 novel analogs of AMA involving structural diversification of each subunit (l-Asp, l-APA1, and l-APA2). Inhibitory activity was evaluated in vitro using five strains of Escherichia coli producing globally prevalent MBLs. Further in vitro assessment was performed with purified recombinant enzymes and intracellular accumulation studies. Highly constrained structure-activity relationships were demonstrated, but three analogs revealed favorable characteristics where either Zn2+ affinity or the binding mode to MBLs were improved. This study identifies compounds that can further be developed to produce more potent and broader-spectrum MBL inhibitors with improved pharmacodynamic/pharmacokinetic properties.

Iso-Tellurazolium-N-Phenoxides: A Family of Te···O Chalcogen-Bonding Supramolecular Building Blocks.

Formal substitution of the oxygen atom of an iso-tellurazole N-oxide with deprotonated (ortho, meta, and para)-hydroxyphenyl groups generated molecules that readily aggregate through Te···O chalcogen bonding (ChB) interactions. The molecules undergo autoassociation in solution, as shown by variable temperature (VT) 1H NMR experiments and paralleling the behavior of iso-tellurazole N-oxides. Judicious adjustment of crystallization conditions enabled the isolation of either polymeric or macrocyclic aggregates. Among the latter, the ortho compound assembled a calixarene-like trimer, while the para isomer built a macrocyclic tetramer akin to a molecular square. The Te···O ChB distances in these structures range from 2.13 to 2.17 Å, comparable to those in the structures of iso-tellurazole N-oxides. DFT calculations estimate that the corresponding Te···O ChB energies are between -122 and -195 kJ mol-1 in model dimers and suggest that macrocyclic aggregation enhances these interactions.

Competing Effects of Chlorination on the Strength of Te⋠⋠⋠O Chalcogen Bonds Select the Structure of Mixed Supramolecular Macrocyclic Aggregates of Iso-Tellurazole N-Oxides.

Chlorination of 3-methyl-5-phenyl-1,2-tellurazole-2-oxide yielded the λ4 Te dichloro derivative. Its crystal structure demonstrates that the heterocycle retains its ability to autoassociate by chalcogen bonding (ChB) forming macrocyclic tetramers. The corresponding Te⋅⋅⋅O ChB distances are 2.062 Å, the shortest observed to date in aggregates of this type. DFT-D3 calculations indicate that while the halogenated molecule is stronger as a ChB donor it also is a weaker ChB acceptor; the overall effect is that the ChBs in the chlorinated homotetramer are not significantly stronger. However, partial halogenation or scrambling selectively yield the 2 : 2 heterotetramer with alternating λ4 Te and λ2 Te centers, which calculations identified as the thermodynamically preferred arrangement.

Reactions of [(dmpe)2MnH(C2H4)]: synthesis and characterization of manganese(i) borohydride and hydride complexes.

Reactions of trans-[(dmpe)2MnH(C2H4)] (1) with BH3(NMe3), 9-BBN, and HBMes2 yielded the manganese(i) borohydride complexes [(dmpe)2Mn(µ-H)2BR2] (3: R = H, 4: R2 = C8H14, 5: R = Mes). The reaction of 1 with BH3(NMe3) proceeds via ethylene substitution. By contrast, a detuerium labelling study indicates that the reaction of 1 with HBMes2 involves initial isomerization of 1 to an unobserved 5-coordinate ethyl intermediate, [(dmpe)2MnEt], which reacts with the hydroborane to afford EtBR2 and [(dmpe)2MnH], followed by reaction with a second equivalent of hydroborane to generate 5 (an analogous pathway is likely followed for other base-free hydroboranes such as 9-BBN). Identification of 3-5 as κ2-borohydride complexes, as opposed to boryl dihydride or hydroborane hydride isomers, is supported by 11B NMR spectroscopy, X-ray diffraction, and Atoms in Molecules calculations. Two byproducts were observed in the syntheses of 3-5: [{(dmpe)2MnH}2(µ-dmpe)] (6) and [(dmpe)2MnH(κ1-dmpe)] (7). These complexes were independently prepared by exposure of 1 to free dmpe under an atmosphere of Ar or H2, and the generality of this synthetic route was demonstrated by the reaction of 1 with PMe3 (under H2) to form [(dmpe)2MnH(PMe3)] (8). Complexes 6-8 can exist as isomers with either a trans or a cis relationship between the hydride and κ1-coordinated phosphine ligands on manganese. trans to cis isomerization of 6-8 is photochemically induced, whereas the reverse reaction occurs under thermal conditions. X-ray crystal structures were obtained for 3-5, trans,trans-6, cis,cis-6, trans-7, and trans-8.

Shedding Light on the Diverse Reactivity of NacNacAl with N-Heterocycles.

The aluminum(I) compound NacNacAl (NacNac=[ArNC(Me)CHC(Me)NAr]- , Ar=2,6-iPr2 C6 H3 , 1) shows diverse and substrate-controlled reactivity in reactions with N-heterocycles. 4-Dimethylaminopyridine (DMAP), a basic substrate in which the 4-position is blocked, induces rearrangement of NacNacAl by shifting a hydrogen atom from the methyl group of the NacNac backbone to the aluminum center. In contrast, C-H activation of the methyl group of 4-picoline takes place to produce a species with a reactive terminal methylene. Reaction of 1 with 3,5-lutidine results in the first example of an uncatalyzed, room-temperature cleavage of an sp2 C-H bond (in the 4-position) by an AlI species. Another reactivity mode was observed for quinoline, which undergoes 2,2'-coupling. Finally, the reaction of 1 with phthalazine produces the product of N-N bond cleavage.

Adduct of NacNacAl with Benzophenone and Its Coupling Chemistry.

Reaction of NacNacAl (NacNac=[DippNC(Me)CHC(Me)NDipp]- ) with one equivalent of benzophenone affords a ketylate species NacNacAl(η2 (C,O)-OCPh2 ) that undergoes easy cyclization reactions with unsaturated substrates. The scope of substrates included benzophenone, aldimine (PhNC(Ph)H), quinoline, phenyl nitrile, trimethylsilyl azide, and a saturated cyclic thiourea. The latter substrate reacted by an unusual C-N cleavage that left the C=S functionality intact. The new products were characterized by NMR spectroscopy and X-ray diffraction analysis.

Reversing Organic-Inorganic Hybrid Perovskite Degradation in Water via pH and Hydrogen Bonds.

The moisture instability of organic-inorganic hybrid perovskite solar cells has been a major obstacle to the commercialization, calling for mechanistic understanding of the degradation process, which has been under debate. Here we present a surprising discovery that the degradation is actually reversible, via in situ observation of X-ray diffraction, supported by FTIR and SEM. To isolate the hydrogen bond effect, water was replaced by methanol during the in situ experiment, revealing the decomposition to be initiated by the breakdown of N-H-I hydrogen bonds. This is followed by the step of organic iodide hydrolyzing, which can be inhibited in the neutral environment, making the whole process reversible under variable pH.

Synthetic and structural investigations of bis(N-alkyl-benzoselenadiazolium) cations.

The synthesis, and spectroscopic and structural characterization of bridged dicationic derivatives of benzo-2,1,3-selenadiazoles are reported. The chloride salt of [H4C6NSeN-CH2-CH2-NSeNC6H4]2+ crystallizes forming a macrocyclic structure in which two cations are bridged by SeCl chalcogen bonds (ChBs), with a third chloride at the centre of the macrocycle. The structure of [1,2-(H4C6NSeN)2-C6H10]Cl2 consists of two selenadiazolium cations linked by a chiral cyclohexane and capped by SeCl ChBs. Tetrafluoroborate salts of a xylene bridge crystallize in two pseudopolymorphs in which the cations form SeF ChBs in an anti- or syn-conformation. The triflate salt of ethylene-bridged cations dimerizes through the formation of the [Se-N]2 supramolecular synthon with SeO ChBs capping the second selenium atom. In contrast, [H4C6NSeN-CH2-CH2-CH2-NSeNC6H4](CF3SO3)2 only forms SeO ChBs.

Interaction of Multiple Bonds with NacNacGa: Oxidative Cleavage vs Coupling and Cyclization.

The reactivity of the gallium(I) compound NacNacGa (4) to a variety of unsaturated compounds has been studied. Whereas 4 proved surprisingly unreactive toward olefins, ketones, guanidines, and thioureas, it reacts with isocyanates and carbodiimides to furnish the products of coupling of two heterocumulenes. With isothiocyanate, the C═S cleavage occurs, leading to the dimer (NacNacGa)2(µ-S)(µ-CNPh) and the cyclization product NacNacGa(S2C═NPh). These compounds were characterized by multinuclear NMR spectroscopy and X-ray crystal structure analyses. Oxidative addition of S═PPh3 occurs at elevated temperatures and results in the known dimer [NacNacGa(µ-S)]2.

Macrocyclic complexes of Pt(ii) and Rh(iii) with iso-tellurazole N-oxides.

Pt(ii) and Rh(iii) readily form complexes with 3-methyl-5-aryl-1,2-tellurazole 2-oxides (L = (3-Me-5-Ar-1,2-C3HTe(NO)). The aryl group is either phenyl or 3,5-di-tert-butylphenyl, the latter case being a new derivative with enhanced solubility. The compound [Pt(3-Me-5-(3,5-tBu2C6H3)-1,2-C3HTe(NO))4](BF4)2 crystallizes in the P21/C space group featuring a square planar complex in the lattice. The crystal of [RhCl2(3-Me-5-(C6H5)-1,2-C3HTe(NO))4](BF4) belongs to the I4[combining macron] space group and contains an octahedral complex. In both instances, the iso-tellurazole N-oxide molecules are linked by TeO chalcogen bonding interactions confirming an annular tetramer that binds the metal ion as a κ4Te macrocycle in a boat conformation. Low-frequency shifts of the 125Te magnetic resonance upon coordination and the observation of 125Te-195Pt and 125Te-103Rh 1J coupling constants indicate that the complexes are stable species in solution. The complex ions were also observed in the electrospray mass spectra.

Pyrrolidinium lead iodide from crystallography: a new perovskite with low bandgap and good water resistance.

The crystal structure of a new perovskite material, (C4H8NH2)PbI3 was determined and illustrated by single crystal X-ray diffraction. UV spectra, photoluminescence and XRD results show it is a promising alternative to hybrid organic-inorganic perovskites due to it's good water resistance and suitable bandgap.

Asymmetric Entry into 10b-aza-Analogues of Amaryllidaceae Alkaloids Reveals a Pronounced Electronic Effect on Antiviral Activity.

Development of a chiral pool-based synthesis of 10b-aza-analogues of biologically active Amaryllidaceae alkaloids is described, involving a concise reductive amination and condensation sequence, leading to ring-B/C-modified, fully functionalized ring-C derivatives. Differentiated anticancer and antiviral activities of these analogues are presented. Despite complete conformational and functional group overlap, the 10b-aza-analogues have diminished anticancer activity and no antiviral activity. These unprecedented electronic effects suggest a possible role for π-type secondary orbital interactions with the biological target.

Building new discrete supramolecular assemblies through the interaction of iso-tellurazole N-oxides with Lewis acids and bases.

The supramolecular macrocycles spontaneously assembled by iso-tellurazole N-oxides are stable towards Lewis bases as strong as N-heterocyclic carbenes (NHC) but readily react with Lewis acids such as BR3 (R = Ph, F). The electron acceptor ability of the tellurium atom is greatly enhanced in the resulting O-bonded adducts, which consequently enables binding to a variety of Lewis bases that includes acetonitrile, 4-dimethylaminopyridine, 4,4'-bipyridine, triphenyl phosphine, a N-heterocyclic carbene and a second molecule of iso-tellurazole N-oxide.

Synthesis and structural characterisation of the aggregates of benzo-1,2-chalcogenazole 2-oxides.

Iodine oxidation of bis[2-(hydroxyiminomethyl)phenyl] dichalcogenides yields benzo-1,2-chalcogenazole 2-oxides. Annulated derivatives of iso-tellurazole N-oxides spontaneously aggregate into cyclic tetra- and hexamers through TeO chalcogen bonding; the structures of the co-crystals with benzene and CH2Cl2 illustrate the ability of these macrocycles to interact with small guest molecules. The selenium congener crystallizes forming a supramolecular polymer. VT NMR indicates that both compounds aggregate in solution but only at low temperature in the selenium case. The different abilities of these molecules to engage in supramolecular interactions are interpreted on the basis of their electronic properties evaluated with DFT-D3 calculations.