Publishing data to support the fight against human vector-borne diseases.

Vector-borne diseases are responsible for more than 17% of human cases of infectious diseases. In most situations, effective control of debilitating and deadly vector-bone diseases (VBDs), such as malaria, dengue, chikungunya, yellow fever, Zika and Chagas requires up-to-date, robust and comprehensive information on the presence, diversity, ecology, bionomics and geographic spread of the organisms that carry and transmit the infectious agents. Huge gaps exist in the information related to these vectors, creating an essential need for campaigns to mobilise and share data. The publication of data papers is an effective tool for overcoming this challenge. These peer-reviewed articles provide scholarly credit for researchers whose vital work of assembling and publishing well-described, properly-formatted datasets often fails to receive appropriate recognition. To address this, GigaScience's sister journal GigaByte partnered with the Global Biodiversity Information Facility (GBIF) to publish a series of data papers, with support from the Special Programme for Research and Training in Tropical Diseases (TDR), hosted by the World Health Organisation (WHO). Here we outline the initial results of this targeted approach to sharing data and describe its importance for controlling VBDs and improving public health.

MODIRISK: Mosquito vectors of disease, collection, monitoring and longitudinal data from Belgium.

The MODIRISK project studied mosquito biodiversity and monitored and predicted biodiversity changes, to actively prepare to address issues of biodiversity change, especially invasive species and new pathogen risks. This work is essential given continuing global changes that may create suitable conditions for invasive species spread and the (re-)emergence of vector-borne diseases in Europe. Key strengths of MODIRISK, in the context of sustainable development, were the links between biodiversity and health and the environment, and its contribution to the development of tools for describing the spatial distribution of mosquito biodiversity. MODIRISK addressed key topics of the global Diversitas initiative, which was a main driver of the Belspo 'Science for a Sustainable Development' research program. Three different MODIRISK datasets were published in the Global Biodiversity Information Facility (GBIF): the Collection dataset (the Culicidae collection of the Museum of Natural History in Brussels); the Inventory dataset (data from the MODIRISK inventory effort); and the Longitudinal dataset (experiment data used for risk assessments).

MEMO: Monitoring of exotic mosquitoes in Belgium.

'MEMO: Monitoring of Exotic MOsquitoes in Belgium' is a sampling event dataset published by the Institute of Tropical Medicine (ITM) in Antwerp, Belgium. It forms part of the early detection of exotic mosquito species (EMS) along high-risk introduction routes in Belgium, where data are collected at defined points of entry (PoEs) using a standardised protocol. The MEMO dataset contains mosquito sampling counts performed between 2017 and 2020. MEMO+2020, an extension of the MEMO dataset, contains only Aedes albopictus mosquito trap counts performed in 2020. Here, we present these data published as a standardised Darwin Core archive, which includes, for each sampling event, an eventID, date, location and sampling protocol (in the event core); and an occurrenceID for each occurrence (tube), the number of collected individuals per tube, species status (present/absent), information on the identification and scientific name (in the occurrence extension).

Inventory of the terrestrial isopods in Belgium (2011-2020).

This data paper describes a recent and spatially complete inventory of the terrestrial isopods of Belgium between 2011 and 2020. During these 10 years every 10 × 10 km² cell of the Universal Transverse Mercator (UTM) grid in Belgium (373 grid cells) was visited in search for terrestrial isopods. Inventories covered different habitat types in every grid cell such as forest, wetlands or stream sides, and urban areas. Most of the dataset records were obtained by hand-collection methods such as turning stones and dead wood, or by sieving litter and through casual observations. These inventories were carried out by specialists from Spinicornis, the Belgian Terrestrial Isopod Group. Their data is complemented with pitfall trap data from scientific projects and verified citizen science data collected via waarnemingen.be and observations.be from the same time period. This resulted in 19,406 dataset records of 35 terrestrial isopod species. All dataset records are georeferenced using the centroid of their respective 5 × 5 km² UTM grid cell. The dataset is published as open data and available through the Global Biodiversity Information Facility (GBIF). Direct link to the dataset: https://doi.org/10.15468/mw9c66.

New records of the land and freshwater molluscs of Gran Canaria (Canary Islands, Spain).

"Land and freshwater molluscs of Gran Canaria (Spain)" is an occurrence dataset containing 389 observations of 59 different taxa of land and freshwater molluscs encountered on Gran Canaria, an island central in the Canarian archipelago (Spain). Of these 59 different (sub)species, 27 are with certainty currently endemic to the island of Gran Canaria. Various sites were inspected in a period between 1988 and 2020. The dataset is published as a standardized Darwin Core Archive and includes for each observation a stable occurrence ID, scientific name, date, and location of the observation, as well as information on life stage and organism quantity. It also contains supplementary remarks on the determination and the observation itself and links to associated media. We have released this dataset to the public domain under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication. The aim is to contribute to the knowledge on the ecology and distribution of these species on the island, such that it may aid conservation and research of these organisms in the future. Issues with the dataset can be reported at https://github.com/BelgianBiodiversityPlatform/landsnails-occurrences.

Watervogels - Wintering waterbirds in Flanders, Belgium.

"Watervogels - Wintering waterbirds in Flanders, Belgium" is a sampling event dataset published by the Research Institute for Nature and Forest (INBO). It contains more than 94,000 sampling events (site counts), covering over 710,000 species observations (and zero counts when there is no associated occurrence) and 36 million individual birds for the period 1991-2016. The dataset includes information on 167 different species in nearly 1,100 wetland sites. The aim of these bird counts is to gather information on the size, distribution, and long-term trends of wintering waterbird populations in Flanders. These data are also used to assess the importance of individual sites for waterbirds, using quantitative criteria. Furthermore, the waterbird counts contribute to international monitoring programs, such as the International Waterbird Census (coordinated by Wetlands International) and fulfil some of the objectives of the European Bird Directive, the Ramsar Convention, and the Agreement on the Conservation of African-Eurasian Migratory Waterbirds (AEWA). Here the dataset is published as a standardized Darwin Core Archive and includes for each event: a stable event ID, date and location of observation and a short description of the sampling protocol, effort and conditions (in the event core), supplemented with specific information for each occurrence: a stable occurrence ID, the scientific name and higher classification of the observed species, the number of recorded individuals, and a reference to the observer of the record (in the occurrence extension). Issues with the dataset can be reported at https://github.com/inbo/data-publication/issues. The following information is not included in this dataset and available upon request: roost site counts, counts from historical (inactive) locations and counts from before 1991. We have released this dataset to the public domain under a CC0 1.0 Universal (CC0 1.0) Public Domain Dedication (https://creativecommons.org/publicdomain/zero/1.0/). We would appreciate it if you follow the INBO norms for data use (https://www.inbo.be/en/norms-data-use) when using the data. If you have any questions regarding this dataset, do not hesitate to contact us via the contact information provided in the metadata or via opendata@inbo.be.

Dipterological surveys in Portugal unveil 200 species of long-legged flies, with over 170 new to the country (Diptera: Dolichopodidae).

A first comprehensive account on the dolichopodid fauna (Diptera: Dolichopodidae) of Portugal is presented as the result of multiple surveys by primarily Portuguese researchers between 2009 and 2016. All mainland Portuguese provinces and all districts but one (Évora) were investigated. A total of 761 dolichopodid samples were collected in 278 sampling sites distributed over 87 municipalities and 182 localities, with nearly ¾ of the samples gathered by sweep net. They contained 6,680 specimens of 200 different species, with 142 recognized (known), 40 new (undescribed) and 18 doubtful species. Medetera and Dolichopus were the most diverse among the recognized species, with 20 and 18 species respectively. Fourteen genera were represented by the new species, with Medetera as most diverse. The doubtful species included one species of Pelastoneurus, which is a first record of this genus for the Palaearctic realm. At present 208 dolichopodid species are known from Portugal. A checklist with 150 recognized species is presented, with first records of 116 species for Portugal. For nearly every species, information on its distribution, ecology and rarity in Portugal and northwestern Europe is given, as well as its seasonal activity in Portugal. Raw distribution data are available as dataset in GBIF. Seventy-five pictures of species in the field, and 15 habitat photos are also provided. Current data suggest that a higher proportion of Portuguese species are rare as compared to the Flemish fauna (northern Belgium). Both share 104 species, with 38 species only recorded from Portugal; only seven can be considered Iberian or Portuguese specialities. Though differences between the two Portuguese biomes cannot be substantiated at this moment, two very common and widespread European species, Campsicnemus scambus and Chrysotimus molliculus, seem to be restricted to the Eurosiberian biome in the northwest of the country. In terms of generic representation, the Portuguese dolichopodid fauna occupies an intermediate position between those of northwestern European and other Mediterranean countries. Despite the large amount of data gathered, the dolichopodid fauna of Portugal remains insufficiently known and a considerable number of additional known and new species can be expected with continued sampling.

A database of threat statuses and life-history traits of Red List species in Flanders (northern Belgium).

BACKGROUND: Red Lists estimate the extinction risk of species at global or regional levels and are important instruments in conservation policies. Global Red List assessments are readily available via the IUCN website (https://www.iucnredlist.org) and are regularly updated by (taxonomic) experts. Regional Red Lists, however, are not always easy to find and often use local criteria to assess the local extinction risk of species. NEW INFORMATION: Here, we publish a database with the outcome of 38 Red List assessments in Flanders (northern Belgium) between 1994 and 2018. In total, the database contains 6,224 records of 5,039 unique taxa pertaining to 24 different taxonomic groups. Using a quality control procedure, we evaluated the criteria used, the number of records, the temporal and spatial distribution of the data and the up-to-dateness of the Red Lists. This way, nineteen Red Lists were approved as being of sufficient high quality (i.e. validated) and nineteen others were not. Once validated, Red Lists are approved by the regional Minister of Environment and published in the Belgian Official Gazette acquiring legal status. For the validated Red Lists, we additionally compiled (life-history) traits that are applicable to a wide variety of species groups (taxonomic kingdom, environment, biotope, nutrient level, dispersal capacity, lifespan and cuddliness). The publication of this dataset allows comparison of Red List statuses with other European regions and countries and permits analyses about how certain (life-history) traits can explain the Red List status of species. The dataset will be regularly updated by adding new Red List (re)assessments and/or additional (life-history) traits.

The inland water macro-invertebrate occurrences in Flanders, Belgium.

The Flanders Environment Agency (VMM) has been performing biological water quality assessments on inland waters in Flanders (Belgium) since 1989 and sediment quality assessments since 2000. The water quality monitoring network is a combined physico-chemical and biological network, the biological component focusing on macro-invertebrates. The sediment monitoring programme produces biological data to assess the sediment quality. Both monitoring programmes aim to provide index values, applying a similar conceptual methodology based on the presence of macro-invertebrates. The biological data obtained from both monitoring networks are consolidated in the VMM macro-invertebrates database and include identifications at family and genus level of the freshwater phyla Coelenterata, Platyhelminthes, Annelida, Mollusca, and Arthropoda. This paper discusses the content of this database, and the dataset published thereof: 282,309 records of 210 observed taxa from 4,140 monitoring sites located on 657 different water bodies, collected during 22,663 events. This paper provides some background information on the methodology, temporal and spatial coverage, and taxonomy, and describes the content of the dataset. The data are distributed as open data under the Creative Commons CC-BY license.

A database on the distribution of butterflies (Lepidoptera) in northern Belgium (Flanders and the Brussels Capital Region).

In this data paper, we describe two datasets derived from two sources, which collectively represent the most complete overview of butterflies in Flanders and the Brussels Capital Region (northern Belgium). The first dataset (further referred to as the INBO dataset - http://doi.org/10.15468/njgbmh) contains 761,660 records of 70 species and is compiled by the Research Institute for Nature and Forest (INBO) in cooperation with the Butterfly working group of Natuurpunt (Vlinderwerkgroep). It is derived from the database Vlinderdatabank at the INBO, which consists of (historical) collection and literature data (1830-2001), for which all butterfly specimens in institutional and available personal collections were digitized and all entomological and other relevant publications were checked for butterfly distribution data. It also contains observations and monitoring data for the period 1991-2014. The latter type were collected by a (small) butterfly monitoring network where butterflies were recorded using a standardized protocol. The second dataset (further referred to as the Natuurpunt dataset - http://doi.org/10.15468/ezfbee) contains 612,934 records of 63 species and is derived from the database http://waarnemingen.be, hosted at the nature conservation NGO Natuurpunt in collaboration with Stichting Natuurinformatie. This dataset contains butterfly observations by volunteers (citizen scientists), mainly since 2008. Together, these datasets currently contain a total of 1,374,594 records, which are georeferenced using the centroid of their respective 5 × 5 km² Universal Transverse Mercator (UTM) grid cell. Both datasets are published as open data and are available through the Global Biodiversity Information Facility (GBIF).

VIS - A database on the distribution of fishes in inland and estuarine waters in Flanders, Belgium.

The Research Institute for Nature and Forest (INBO) has been performing standardized fish stock assessments in Flanders, Belgium. This Flemish Fish Monitoring Network aims to assess fish populations in public waters at regular time intervals in both inland waters and estuaries. This monitoring was set up in support of the Water Framework Directive, the Habitat Directive, the Eel Regulation, the Red List of fishes, fish stock management, biodiversity research, and to assess the colonization and spreading of non-native fish species. The collected data are consolidated in the Fish Information System or VIS. From VIS, the occurrence data are now published at the INBO IPT as two datasets: 'VIS - Fishes in inland waters in Flanders, Belgium' and 'VIS - Fishes in estuarine waters in Flanders, Belgium'. Together these datasets represent a complete overview of the distribution and abundance of fish species pertaining in Flanders from late 1992 to the end of 2012. This data paper discusses both datasets together, as both have a similar methodology and structure. The inland waters dataset contains over 350,000 fish observations, sampled between 1992 and 2012 from over 2,000 locations in inland rivers, streams, canals, and enclosed waters in Flanders. The dataset includes 64 fish species, as well as a number of non-target species (mainly crustaceans). The estuarine waters dataset contains over 44,000 fish observations, sampled between 1995 and 2012 from almost 50 locations in the estuaries of the rivers Yser and Scheldt ("Zeeschelde"), including two sampling sites in the Netherlands. The dataset includes 69 fish species and a number of non-target crustacean species. To foster broad and collaborative use, the data are dedicated to the public domain under a Creative Commons Zero waiver and reference the INBO norms for data use.

FORMIDABEL: The Belgian Ants Database.

UNLABELLED: FORMIDABEL is a database of Belgian Ants containing more than 27.000 occurrence records. These records originate from collections, field sampling and literature. The database gives information on 76 native and 9 introduced ant species found in Belgium. The collection records originated mainly from the ants collection in Royal Belgian Institute of Natural Sciences (RBINS), the 'Gaspar' Ants collection in Gembloux and the zoological collection of the University of Liège (ULG). The oldest occurrences date back from May 1866, the most recent refer to August 2012. FORMIDABEL is a work in progress and the database is updated twice a year. THE LATEST VERSION OF THE DATASET IS PUBLICLY AND FREELY ACCESSIBLE THROUGH THIS URL: http://ipt.biodiversity.be/resource.do?r=formidabel. The dataset is also retrievable via the GBIF data portal through this link: http://data.gbif.org/datasets/resource/14697 A dedicated geo-portal, developed by the Belgian Biodiversity Platform is accessible at: http://www.formicidae-atlas.be PURPOSE: FORMIDABEL is a joint cooperation of the Flemish ants working group "Polyergus" (http://formicidae.be) and the Wallonian ants working group "FourmisWalBru" (http://fourmiswalbru.be). The original database was created in 2002 in the context of the preliminary red data book of Flemish Ants (Dekoninck et al. 2003). Later, in 2005, data from the Southern part of Belgium; Wallonia and Brussels were added. In 2012 this dataset was again updated for the creation of the first Belgian Ants Atlas (Figure 1) (Dekoninck et al. 2012). The main purpose of this atlas was to generate maps for all outdoor-living ant species in Belgium using an overlay of the standard Belgian ecoregions. By using this overlay for most species, we can discern a clear and often restricted distribution pattern in Belgium, mainly based on vegetation and soil types.

Florabank1: a grid-based database on vascular plant distribution in the northern part of Belgium (Flanders and the Brussels Capital region).

Florabank1 is a database that contains distributional data on the wild flora (indigenous species, archeophytes and naturalised aliens) of Flanders and the Brussels Capital Region. It holds about 3 million records of vascular plants, dating from 1800 till present. Furthermore, it includes ecological data on vascular plant species, redlist category information, Ellenberg values, legal status, global distribution, seed bank etc. The database is an initiative of "Flo.Wer" (www.plantenwerkgroep.be), the Research Institute for Nature and Forest (INBO: www.inbo.be) and the National Botanic Garden of Belgium (www.br.fgov.be). Florabank aims at centralizing botanical distribution data gathered by both professional and amateur botanists and to make these data available to the benefit of nature conservation, policy and scientific research.The occurrence data contained in Florabank1 are extracted from checklists, literature and herbarium specimen information. Of survey lists, the locality name (verbatimLocality), species name, observation date and IFBL square code, the grid system used for plant mapping in Belgium (Van Rompaey 1943), is recorded. For records dating from the period 1972-2004 all pertinent botanical journals dealing with Belgian flora were systematically screened. Analysis of herbarium specimens in the collection of the National Botanic Garden of Belgium, the University of Ghent and the University of Liège provided interesting distribution knowledge concerning rare species, this information is also included in Florabank1. The data recorded before 1972 is available through the Belgian GBIF node (http://data.gbif.org/datasets/resource/10969/), not through FLORABANK1, to avoid duplication of information. A dedicated portal providing access to all published Belgian IFBL records at this moment is available at: http://projects.biodiversity.be/ifblAll data in Florabank1 is georeferenced. Every record holds the decimal centroid coordinates of the IFBL square containing the observation. The uncertainty radius is the smallest circle possible covering the whole IFBL square, which can measure 1 Km² or 4 Km². Florabank is a work in progress and new occurrences are added as they become available; the dataset will be updated through GBIF on a regularly base.