Molecular characterization of Bu-1 and TLR2 gene in Haringhata Black chicken.

Haringhata Black is the only registered indigenous poultry genetic resource of West Bengal till date. Molecular characterization of HB revealed that Bu-1 to be highly glycoylated transmembrane protein unlike mammalian Bu-1, whereas TLR2 of HB chicken was observed to be rich in Leucine rich repeat. HB chicken was observed to be genetically close to chicken of Japan, while distant to chicken breed of UK and Chicago. Avian species wise evolution study indicates genetic closeness of HB chicken with turkey. Differential mRNA expression profile for the immune response genes (TLR2, TLR4 and Bu1 gene) were studied for HB chicken with respect to other chicken breed and poultry birds, which reveals that HB chicken were better in terms of B cell mediated immunity and hence better response to vaccination. Hence HB chicken is one of the best poultry genetic resources to be reared under backyard system where biosecurity measures are almost lacking.

Mutation in Cytochrome B gene causes debility and adverse effects on health of sheep.

Cytochrome B is the mitochondrial protein, which functions as part of the electron transport chain and is the main subunit of transmembrane cytochrome bc1 and b6f complexes affecting energy metabolism through oxidative phosphorylation. The present study was conducted to study the effect of mutation of Cytochrome B gene on the health condition of sheep, which the first report of association of mitochondrial gene with disease traits in livestock species. Non-synonymous substitutions (F33 L and D171N) and Indel mutations were observed for Cytochrome B gene, leading to a truncated protein, where anemia, malfunctioning of most of the vital organs as liver, kidney and mineral status was observed and debility with exercise intolerance and cardiomyopathy in extreme cases were depicted. These findings were confirmed by bioinformatics analysis, haematological and biochemical data analysis, and other phenotypical physiological data pertaining to different vital organs. The molecular mechanism of cytochrome B mutation was that the mutant variant interferes with the site of heme binding (iron containing) domain and calcium binding essential for electron transport chain. Mutation at amino acid site 33 is located within transmembrane helix A, a hydrophobic environment at the Qi site and close to heme binding domain, and mutation effects these domain and diseases occur. Thermodynamic stability was also observed to decrease in mutant variant. Sheep Cytochrome B being genetically more similar to the human, it may be used as a model for studying human diseases related to cytochrome B defects. Future prospect of the study includes the therapeutic application of recombinant protein, gene therapy and marker-assisted selection of disease-resistant livestock.

Molecular Characterization and SNP Detection of CD14 Gene of Crossbred Cattle.

CD14 is an important molecule for innate immunity that can act against a wide range of pathogens. The present paper has characterized CD14 gene of crossbred (CB) cattle (Bos indicus×Bos taurus). Cloning and sequence analysis of CD14 cDNA revealed 1119 nucleotide long open reading frame encoding 373 amino acids protein and 20 amino acids signal peptide. CB cattle CD14 gene exhibited a high percentage of nucleotide identity (59.3-98.1%) with the corresponding mammalian homologs. Cattle and buffalo appear to have diverged from a common ancestor in phylogenetic analysis. 25 SNPs with 17 amino acid changes were newly reported and the site for mutational hot-spot was detected in CB cattle CD14 gene. Non-synonymous substitutions exceeding synonymous substitutions indicate the evolution of this protein through positive selection among domestic animals. Predicted protein structures obtained from deduced amino acid sequence indicated CB cattle CD14 molecule to be a receptor with horse shoe-shaped structure. The sites for LPS binding, LPS signalling, leucine-rich repeats, putative N-linked glycosylation, O-linked glycosylation, glycosyl phosphatidyl inositol anchor, disulphide bridges, alpha helix, beta strand, leucine rich nuclear export signal, leucine zipper and domain linker were predicted. Most of leucine and cysteine residues remain conserved across the species.

Determination of nutrient requirements for growth and maintenance of growing pigs under tropical condition.

Data from 27 feeding trials conducted on growing pigs from different research institutes across India were subjected to mixed model regression analysis to derive requirements of digestible energy (DE), crude protein (CP) and essential amino acids for maintenance and body weight gains. The ranges of maintenance requirements were determined to be: DE 516 to 702 kJ/kg M0.75, CP 6.98 to 11.62, lysine 0.431 to 0.664, methionine 0.265 to 0.458, methionine + cystine 0.327 to 0.466, cystine 0.055 to 0.184, threonine 0.205 to 0.511, arginine 0.377 to 1.21, isoleucine 0.241 to 0.775, leucine 0.604 to 1.54, phenylalanine + tyrosine 0.496 to 1.33, tryptophan 0.078 to 0.213, and valine 0.330 to 0.892 g/kg M0.75, respectively for different body weight ranges. The corresponding requirements for 1 g gain in body weight were: DE 28.6 to 38.6 kJ, CP 0.27 to 0.44 g, lysine 0.0071 to 0.0126 g, methionine 0.0047 to 0.0133 g, methionine + cystine 0.0151 to 0.0261 g, cystine 0.0043 to 0.0094 g, threonine 0.0052 to 0.0165 g, arginine 0.0045 to 0.0301 g, isoleucine 0.0023 to 0.0198 g, leucine 0.0150 to 0.0447 g, phenylalanine + tyrosine 0.0091 to 0.0382 g, tryptophan 0.0005 to 0.0044 g, and valine 0.0061 to 0.0222 g. Regression equations had high R2 values (ranging from 0.50 to 0.99 for different estimates), low coefficients of variation, low variance of error estimates and the coefficients were highly significant (P < 0.001). Regressed values were used to develop feeding standards. As the new standards derived in the present study are based on a thorough analysis of a larger database than previous Indian standards, the new feeding standard seems to be more appropriate for India and other tropical countries.