Voxel-based logistic analysis of PPMI control and Parkinson's disease DaTscans.

A comprehensive analysis of the Parkinson's Progression Markers Initiative (PPMI) Dopamine Transporter Single Photon Emission Computed Tomography (DaTscan) images is carried out using a voxel-based logistic lasso model. The model reveals that sub-regional voxels in the caudate, the putamen, as well as in the globus pallidus are informative for classifying images into control and PD classes. Further, a new technique called logistic component analysis is developed. This technique reveals that intra-population differences in dopamine transporter concentration and imperfect normalization are significant factors influencing logistic analysis. The interactions with handedness, sex, and age are also evaluated.

Simultaneous nonrigid registration, segmentation, and tumor detection in MRI guided cervical cancer radiation therapy.

External beam radiation therapy (EBRT) for the treatment of cancer enables accurate placement of radiation dose on the cancerous region. However, the deformation of soft tissue during the course of treatment, such as in cervical cancer, presents significant challenges for the delineation of the target volume and other structures of interest. Furthermore, the presence and regression of pathologies such as tumors may violate registration constraints and cause registration errors. In this paper, automatic segmentation, nonrigid registration and tumor detection in cervical magnetic resonance (MR) data are addressed simultaneously using a unified Bayesian framework. The proposed novel method can generate a tumor probability map while progressively identifying the boundary of an organ of interest based on the achieved nonrigid transformation. The method is able to handle the challenges of significant tumor regression and its effect on surrounding tissues. The new method was compared to various currently existing algorithms on a set of 36 MR data from six patients, each patient has six T2-weighted MR cervical images. The results show that the proposed approach achieves an accuracy comparable to manual segmentation and it significantly outperforms the existing registration algorithms. In addition, the tumor detection result generated by the proposed method has a high agreement with manual delineation by a qualified clinician.

A unified framework for joint segmentation, nonrigid registration and tumor detection: application to MR-guided radiotherapy.

Image guided external beam radiation therapy (EBRT) for the treatment of cancer enables accurate placement of radiation dose to the cancerous region. However, the deformation of soft tissue during the course of treatment, such as in cervical cancer, presents significant challenges. Furthermore, the presence of pathologies such as tumors may violate registration constraints and cause registration errors. In this paper, we present a unified MAP framework that performs automatic segmentation, nonrigid registration and tumor detection simultaneously. It can generate a tumor probability map while progressively identifing the boundary of an organ of interest based on the achieved transformation. We demonstrate the approach on a set of 30 T2-weighted MR images, and the results show that the approach performs better than similar methods which separate the registration and segmentation problems. In addition, the detection result generated by the proposed method has a high agreement with the manual delineation by a qualified clinician.

An integrated approach to segmentation and nonrigid registration for application in image-guided pelvic radiotherapy.

External beam radiotherapy (EBRT) has become the preferred options for nonsurgical treatment of prostate cancer and cervix cancer. In order to deliver higher doses to cancerous regions within these pelvic structures (i.e. prostate or cervix) while maintaining or lowering the doses to surrounding non-cancerous regions, it is critical to account for setup variation, organ motion, anatomical changes due to treatment and intra-fraction motion. In previous work, manual segmentation of the soft tissues is performed and then images are registered based on the manual segmentation. In this paper, we present an integrated automatic approach to multiple organ segmentation and nonrigid constrained registration, which can achieve these two aims simultaneously. The segmentation and registration steps are both formulated using a Bayesian framework, and they constrain each other using an iterative conditional model strategy. We also propose a new strategy to assess cumulative actual dose for this novel integrated algorithm, in order to both determine whether the intended treatment is being delivered and, potentially, whether or not a plan should be adjusted for future treatment fractions. Quantitative results show that the automatic segmentation produced results that have an accuracy comparable to manual segmentation, while the registration part significantly outperforms both rigid and nonrigid registration. Clinical application and evaluation of dose delivery show the superiority of proposed method to the procedure currently used in clinical practice, i.e. manual segmentation followed by rigid registration.

Integrated segmentation and nonrigid registration for application in prostate image-guided radiotherapy.

Many current image-guided radiotherapy (IGRT) systems incorporate an in-room cone-beam CT (CBCT) with a radiotherapy linear accelerator for treatment day imaging. Segmentation of key anatomical structures (prostate and surrounding organs) in 3DCBCT images as well as registration between planning and treatment images are essential for determining many important treatment parameters. Due to the image quality of CBCT, previous work typically uses manual segmentation of the soft tissues and then registers the images based on the manual segmentation. In this paper, an integrated automatic segmentation/constrained nonrigid registration is presented, which can achieve these two aims simultaneously. This method is tested using 24 sets of real patient data. Quantitative results show that the automatic segmentation produces results that have an accuracy comparable to manual segmentation, while the registration part significantly outperforms both rigid and non-rigid registration. Clinical application also shows promising results.

A gradient feature weighted Minimax algorithm for registration of multiple portal images to 3DCT volumes in prostate radiotherapy.

PURPOSE: To develop an accurate, fast, and robust algorithm for registering portal and computed tomographic (CT) images for radiotherapy using a combination of sparse and dense field data that complement each other. METHODS AND MATERIALS: Gradient Feature Weighted Minimax (GFW Minimax) method was developed to register multiple portal images to three-dimensional CT images. Its performance was compared with that of three others: Minimax, Mutual Information, and Gilhuijs' method. Phantom and prostate cancer patient images were used. Effects of registration errors on tumor control probability (TCP) and normal tissue complication probability (NTCP) were investigated as a relative measure. RESULTS: Registration of four portals to CTs resulted in 30% lower error when compared with registration with two portals. Computation time increased by nearly 50%. GFW Minimax performed the best, followed by Gilhuijs' method, the Minimax method, and Mutual Information. CONCLUSIONS: Using four portals instead of two lowered the registration error. Reduced fields of view images with full feature sets gave similar results in shorter times as full fields of view images. In clinical situations where soft tissue targets are of importance, GFW Minimax algorithm was significantly more accurate and robust. With registration errors lower than 1 mm, margins may be scaled down to 4 mm without adversely affecting TCP and NTCP.

Optimizing Compton camera geometries.

Compton cameras promise to improve the characteristics of nuclear medicine imaging, wherein mechanical collimation is replaced with electronic collimation. This leads to huge gains in sensitivity and, consequently, a reduction in the radiation dosage that needs to be administered to the patient. Design modifications that improve the sensitivity invariably compromise resolution. The scope of the current project was to determine an optimal design and configuration of a Compton camera that strikes a balance between these two properties. Transport of the photon flux from the source to the detectors was simulated with the camera geometry serving as the parameter to be optimized. Two variations of the Boltzmann photon transport equation, with and without photon polarization, were employed to model the flux. Doppler broadening of the energy spectra was also included. The simulation was done in a Monte Carlo framework using GEANT4. Two clinically relevant energies, 140 keV and 511 keV, corresponding to 99mTc and 18F were simulated. The gain in the sensitivity for the Compton camera over the conventional camera was 100 fold. Neither Doppler broadening nor polarization had any significant effect on the sensitivity of the camera. However, the spatial resolution of the camera was affected by these processes. Doppler broadening had a deleterious effect on the spatial resolution, but polarization improved the resolution when accounted for in the reconstruction algorithm.