Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 21
Filtrar
1.
Alzheimers Res Ther ; 16(1): 63, 2024 03 23.
Artigo em Inglês | MEDLINE | ID: mdl-38521950

RESUMO

Alzheimer's disease (AD) is the most common cause of dementia, and its underlying mechanisms have been a subject of great interest. The mainstream theory of AD pathology suggests that the disease is primarily associated with tau protein and amyloid-beta (Aß). However, an increasing body of research has revealed that abnormalities in lipid metabolism may be an important event throughout the pathophysiology of AD. Astrocytes, as important members of the lipid metabolism network in the brain, play a significant role in this event. The study of abnormal lipid metabolism in astrocytes provides a new perspective for understanding the pathogenesis of AD. This review focuses on the abnormal metabolism of fatty acids (FAs) and cholesterol in astrocytes in AD, and discusses it from three perspectives: lipid uptake, intracellular breakdown or synthesis metabolism, and efflux transport. We found that, despite the accumulation of their own fatty acids, astrocytes cannot efficiently uptake fatty acids from neurons, leading to fatty acid accumulation within neurons and resulting in lipotoxicity. In terms of cholesterol metabolism, astrocytes exhibit a decrease in endogenous synthesis due to the accumulation of exogenous cholesterol. Through a thorough investigation of these metabolic abnormalities, we can provide new insights for future therapeutic strategies by literature review to navigate this complex metabolic maze and bring hope to patients with Alzheimer's disease.


Assuntos
Doença de Alzheimer , Humanos , Doença de Alzheimer/patologia , Astrócitos/metabolismo , Ácidos Graxos/metabolismo , Peptídeos beta-Amiloides/metabolismo , Colesterol
2.
Chemosphere ; 308(Pt 2): 136394, 2022 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-36099984

RESUMO

Humans are constantly exposed to parabens (PBs), triclosan (TCS), benzophenones (BPs), and phthalate esters (PAEs) due to the widespread existence of these chemicals in personal care products (PCPs), and the high frequency of usage for humans. Previous studies indicated each class of the above-mentioned chemicals can exhibit potential adverse effects on humans, in particular DNA oxidative damage. However, the health risk assessment of combined exposures to multiple PCPs is limited, especially the overall dose-effect of mixtures of these chemicals on DNA oxidative damage. In this study, we measured the urinary levels of 6 PBs, TCS, 8 BPs, 15 metabolites of PAEs (mono-PAEs), and 8-hydroxy-2'-deoxyguanosine (8-OHdG) from 299 adults simultaneously. PBs, TCS, BPs, and mono-PAEs were frequently detected in urinary samples with median concentrations of 52.888, 0.737, 1.305, and 141.381 ng/ml, suggesting a broad, low-level exposure among participants. Risk assessments indicated approximately 22% and 15% of participants suffered health risks (Hazard index >1) from exposure to TCS and PAEs. The relationship between 8-OHdG levels and chemical exposure was estimated by Bayesian kernel machine regression (BKMR) models. It indicated an overall positive correlation between the mixture of these chemicals and 8-OHdG, with methylparaben and mono-benzyl phthalate contributing the most to this association. Of note, sex-related differences were observed, in which exposure to PCPs led to higher health risks and more pronounced dose-effect on DNA damage in the female population. Our novel findings reveal the health risks of exposure to low-level PCPs mixtures and further point out the overall dose-response relationship between DNA oxidative damage and PCP mixtures.


Assuntos
Cosméticos , Poluentes Ambientais , Ácidos Ftálicos , Triclosan , 8-Hidroxi-2'-Desoxiguanosina , Adulto , Teorema de Bayes , Benzofenonas/toxicidade , Benzofenonas/urina , Exposição Ambiental/análise , Poluentes Ambientais/urina , Ésteres/toxicidade , Feminino , Humanos , Estresse Oxidativo , Parabenos/análise , Ácidos Ftálicos/metabolismo , Triclosan/toxicidade
3.
J Phys Chem B ; 126(24): 4543-4554, 2022 06 23.
Artigo em Inglês | MEDLINE | ID: mdl-35696448

RESUMO

In this work, the components of the protein electrostatic potentials in solution are analyzed with NMR paramagnetic relaxation enhancement experiments and compared with continuum solution theory, and multiscale simulations. To determine the contributions of the solution components, we analyze them at different ionic strengths from 0 to 745 mM. A theoretical approximation allows the determination of the electrostatic potential at a given proton without reference to the protein structure given the ratio of paramagnetic relaxation enhancements rates between a cationic and an anionic probe. The results derived from simulations show good agreement with experiment and simple continuum solvent theory for many of the residues. A discrepancy including a switch of sign of the electrostatic potential was observed for particular residues. By considering the components of the potential, we found the discrepancy is mainly caused by angular correlations of the probe molecules with these residues. The correction for the correlations allows a more accurate analysis of the experiments determining the electrostatic potential of proteins in solution.


Assuntos
Proteínas , Proteínas/química , Solventes/química , Eletricidade Estática
4.
Life (Basel) ; 12(5)2022 May 07.
Artigo em Inglês | MEDLINE | ID: mdl-35629366

RESUMO

A detailed understanding of the physical mechanism of ion-mediated dsDNA interactions is important in biological functions such as DNA packaging and homologous pairing. We report the potential of mean force (PMF) or the effective solvent mediated interactions between two parallel identical dsDNAs as a function of interhelical separation in 0.15 M NaCl solution. Here, we study the influence of flexibility of dsDNAs on the effective interactions by comparing PMFs between rigid models and flexible ones. The role of flexibility of dsDNA pairs in their association is elucidated by studying the energetic properties of Na+ ions as well as the fluctuations of ions around dsDNAs. The introduction of flexibility of dsDNAs softens the vdW contact wall and induces more counterion fluctuations around dsDNAs. In addition, flexibility facilitates the Na+ ions dynamics affecting their distribution. The results quantify the extent of attraction influenced by dsDNA flexibility and further emphasize the importance of non-continuum solvation approaches.

5.
Environ Res ; 199: 111328, 2021 08.
Artigo em Inglês | MEDLINE | ID: mdl-34004169

RESUMO

BACKGROUND: The underlying mechanisms of lead (Pb) toxicity are not fully understood, which makes challenges to the traditional risk assessment. There is growing use of the mode of action (MOA) for risk assessment by integration of experimental data and system biology. The current study aims to develop a new pathway-based MOA for assessing Pb-induced neurotoxicity. METHODS: The available Comparative Toxicogenomic Database (CTD) was used to search genes associated with Pb-induced neurotoxicity followed by developing toxicity pathways using Ingenuity Pathway Analysis (IPA). The spatiotemporal sequence of disturbing toxicity pathways and key events (KEs) were identified by upstream regulator analysis. The MOA framework was constructed by KEs in biological and chronological order. RESULTS: There were a total of 71 references showing the relationship between lead exposure and neurotoxicity, which contained 2331 genes. IPA analysis showed that the neuroinflammation signaling pathway was the core toxicity pathway in the enriched pathways relevant to Pb-induced neurotoxicity. The upstream regulator analysis demonstrated that the aryl hydrocarbon receptor (AHR) signaling pathway was the upstream regulator of the neuroinflammation signaling pathway (11.76% overlap with upstream regulators, |Z-score|=1.451). Therefore, AHR activation was recognized as the first key event (KE1) in the MOA framework. The following downstream molecular and cellular key events were also identified. The pathway-based MOA framework of Pb-induced neurotoxicity was built starting with AHR activation, followed by an inflammatory response and neuron apoptosis. CONCLUSION: Our toxicity pathway-based approach not only advances the development of risk assessment for Pb-induced neurotoxicity but also brings new insights into constructing MOA frameworks of risk assessment for new chemicals.


Assuntos
Chumbo , Toxicogenética , Apoptose , Chumbo/toxicidade , Medição de Risco , Transdução de Sinais
6.
Phys Rev E ; 101(3-1): 032414, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-32289903

RESUMO

The molecular mechanism of specific interactions between double stranded DNA molecules has been investigated for many years. Problems remain in how confinement, ions, and condensing agents change the interactions. We consider how the orientational alignment of DNAs contributes to the interactions via free energy simulations. Here we report on the effective interactions between two parallel DNA double helices in 150-mM NaCl solution using all atom models. We calculate the potential of mean force (PMF) of DNA-DNA interactions as a function of two coordinates, interhelical separation of parallel double helices and relative rotation of a DNA molecule with respect to the other about the helical axis. We generate the two-dimensional PMF to better understand the effective interactions when a DNA molecule is in juxtaposition with another. The analysis of the ion and solvent distributions around the DNA and particularly in the interface region shows that certain alignments of the DNA pair enhance the interactions. At local free energy minima in distance and alignment, water molecules and Na^{+} ions form a hydrogen bonded network with the phosphates from each DNA. This network contributes an attractive energy component to the DNA-DNA interactions. Our results provide a molecular mechanism whereby local DNA-DNA interactions, depending on the helical orientation, give a potential mechanism for stabilizing pairing of much larger lengths of homologous DNA that have been seen experimentally. The study suggests an atomically detailed local picture of relevance to certain aspects of DNA condensation or aggregation.


Assuntos
DNA/química , DNA/metabolismo , Simulação de Dinâmica Molecular , Conformação de Ácido Nucleico , Rotação
7.
Toxicol In Vitro ; 66: 104830, 2020 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-32198055

RESUMO

Bone marrow failure is a characteristic effect of benzene exposure. Our previous study has shown that miR-486-5p is involved in benzene induced-suppression of erythroid differentiation. However, the mechanism of miR-486-5p to initiate the above process remains unclear. In this study, we used miRTar software to predict putative miRNA targets and pathway. We found that miR-486-5p may target Ras-associated protein-1 (Rap1) signaling pathway-associated genes. Our in vitro study further showed significant dose-dependent upregulation of MAGI1 and RASSF5 expressions in hydroquinone (HQ)-induced suppression of erythroid differentiation of K562 cells. Over-expression or down-regulation of miR-486-5p altered MAGI1 and RASSF5 expression and modified erythroid differentiation. Dual-luciferase reporter assay and fluorescence-based RNA electrophoresis mobility assay (FREMSA) further confirmed that miR-486-5p directly bound to the 3'-untranslated region (3'-UTR) of MAGI1 and RASSF5. In addition, the expressions of RAPGEF2 and RAP1A, which are downstream genes of MAGI1, were also significantly increased when HQ inhibited erythroid differentiation. Knockdown of MAGI1 reversed HQ-induced inhibition of erythroid differentiation via downregulation of RAPGEF2, RAP1A and RASSF5. Together, these data indicate that miR-486-5p directly targets MAGI1 and RASSF5 and integrates with Rap1 signaling to modify HQ-induced inhibition of erythroid differentiation in K562 cells.


Assuntos
Proteínas Adaptadoras de Transdução de Sinal , Proteínas Reguladoras de Apoptose , Moléculas de Adesão Celular , Guanilato Quinases , Hidroquinonas/farmacologia , MicroRNAs , Proteínas de Ligação a Telômeros , Proteínas Adaptadoras de Transdução de Sinal/genética , Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Proteínas Reguladoras de Apoptose/genética , Proteínas Reguladoras de Apoptose/metabolismo , Moléculas de Adesão Celular/genética , Moléculas de Adesão Celular/metabolismo , Diferenciação Celular/efeitos dos fármacos , Guanilato Quinases/genética , Guanilato Quinases/metabolismo , Humanos , Células K562 , Complexo Shelterina , Transdução de Sinais/efeitos dos fármacos , Proteínas de Ligação a Telômeros/genética , Proteínas de Ligação a Telômeros/metabolismo
8.
J Phys Chem B ; 123(17): 3706-3710, 2019 05 02.
Artigo em Inglês | MEDLINE | ID: mdl-30963768

RESUMO

Due to chemical exchange, the mobility of histidine (His) side chains of proteins is typically difficult to analyze by NMR spectroscopy. Using an NMR approach that is uninfluenced by chemical exchange, we investigated internal motions of the His imidazole NH groups that directly interact with DNA phosphates in the Egr-1 zinc-finger-DNA complex. In this approach, the transverse and longitudinal cross-correlation rates for 15N chemical shift anisotropy and 15N-1H dipole-dipole relaxation interference were analyzed together with 15N longitudinal relaxation rates and heteronuclear Overhauser effect data at two magnetic field strengths. We found that the zinc-coordinating His side chains directly interacting with DNA phosphates are strongly restricted in mobility. This makes a contrast to the arginine and lysine side chains that retain high mobility despite their interactions with DNA phosphates in the same complex. The entropic effects of side-chain mobility on the molecular association are discussed.


Assuntos
DNA/química , Histidina/análise , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Estrutura Molecular , Isótopos de Nitrogênio , Tamanho da Partícula , Propriedades de Superfície , Dedos de Zinco
9.
Methods Enzymol ; 615: 285-332, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30638532

RESUMO

NMR spectroscopy is a powerful tool for studying protein dynamics. Conventionally, NMR studies on protein dynamics have probed motions of protein backbone NH, side-chain aromatic, and CH3 groups. Recently, there has been remarkable progress in NMR methodologies that can characterize motions of cationic groups in protein side chains. These NMR methods allow investigations of the dynamics of positively charged lysine (Lys) and arginine (Arg) side chains and their hydrogen bonds as well as their electrostatic interactions important for protein function. Here, describing various practical aspects, we provide an overview of the NMR methods for dynamics studies of Lys and Arg side chains. Some example data on protein-DNA complexes are shown. We will also explain how molecular dynamics (MD) simulations can facilitate the interpretation of the NMR data on these basic side chains. Studies combining NMR and MD have revealed the highly dynamic nature of short-range electrostatic interactions via ion pairs, especially those involving Lys side chains.


Assuntos
Espectroscopia de Ressonância Magnética/métodos , Conformação Proteica , Arginina/química , Ligação de Hidrogênio , Lisina/química , Simulação de Dinâmica Molecular , Eletricidade Estática , Termodinâmica
10.
PLoS One ; 12(3): e0171630, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28278167

RESUMO

BACKGROUND: Intracavitary electrocardiogram (IC ECG) guidance emerges as a new technique for peripherally inserted central catheters (PICCs) placement and demonstrates many potential advantages in recent observational studies. AIMS: To determine whether IC ECG-guided PICCs provide more accurate positioning of catheter tips compared to conventional anatomical landmarks in patients with cancer undergoing chemotherapy. METHODS: In this multicenter, open-label, randomized controlled study (ClinicalTrials.gov number, NCT02409589), a total of 1,007 adult patients were assigned to receive either IC ECG guidance (n = 500) or anatomical landmark guidance (n = 507) for PICC positioning. The confirmative catheter tip positioning x-ray data were centrally interpreted by independent radiologists. All reported analyses in the overall population were performed on an intention-to-treat basis. Analyses of pre-specified subgroups and a selected large subpopulation were conducted to explore consistency and accuracy. RESULTS: In the IC ECG-guided group, the first-attempt success rate was 89.2% (95% confidence interval [CI], 86.5% to 91.9%), which was significantly higher than 77.4% (95% CI, 73.7% to 81.0%) in the anatomical landmark group (P < 0.0001). This trend of superiority of IC ECG guidance was consistently noted in almost all prespecified patient subgroups and two selected large subpopulations, even when using optimal target rates for measurement. In contrast, the superiority nearly disappeared when PICCs were used via the left instead of right arms (interaction P-value = 0.021). No catheter-related adverse events were reported during the PICC intra-procedures in either group. CONCLUSIONS: Our findings indicated that the IC ECG-guided method had a more favorable positioning accuracy versus traditional anatomical landmarks for PICC placement in adult patients with cancer undergoing chemotherapy. Furthermore, there were no significant safety concerns reported for catheterization using the two techniques.


Assuntos
Pontos de Referência Anatômicos , Cateterismo Venoso Central/métodos , Cateterismo Periférico/métodos , Cateteres Venosos Centrais , Eletrocardiografia/métodos , Neoplasias/terapia , Adulto , Idoso , Cateterismo Venoso Central/instrumentação , Cateterismo Periférico/instrumentação , Feminino , Humanos , Pessoa de Meia-Idade , Posicionamento do Paciente , Valor Preditivo dos Testes
11.
Nucleic Acids Res ; 44(14): 6961-70, 2016 08 19.
Artigo em Inglês | MEDLINE | ID: mdl-27288446

RESUMO

Basic side chains play major roles in recognition of nucleic acids by proteins. However, dynamic properties of these positively charged side chains are not well understood. In this work, we studied changes in conformational dynamics of basic side chains upon protein-DNA association for the zinc-finger protein Egr-1. By nuclear magnetic resonance (NMR) spectroscopy, we characterized the dynamics of all side-chain cationic groups in the free protein and in the complex with target DNA. Our NMR order parameters indicate that the arginine guanidino groups interacting with DNA bases are strongly immobilized, forming rigid interfaces. Despite the strong short-range electrostatic interactions, the majority of the basic side chains interacting with the DNA phosphates exhibited high mobility, forming dynamic interfaces. In particular, the lysine side-chain amino groups exhibited only small changes in the order parameters upon DNA-binding. We found a similar trend in the molecular dynamics (MD) simulations for the free Egr-1 and the Egr-1-DNA complex. Using the MD trajectories, we also analyzed side-chain conformational entropy. The interfacial arginine side chains exhibited substantial entropic loss upon binding to DNA, whereas the interfacial lysine side chains showed relatively small changes in conformational entropy. These data illustrate different dynamic characteristics of the interfacial arginine and lysine side chains.


Assuntos
Aminoácidos Básicos/metabolismo , DNA/metabolismo , Proteínas/química , Proteínas/metabolismo , Sequência de Aminoácidos , Cátions , DNA/química , Entropia , Humanos , Simulação de Dinâmica Molecular , Ressonância Magnética Nuclear Biomolecular , Fosfatos/metabolismo , Conformação Proteica , Espectroscopia de Prótons por Ressonância Magnética , Eletricidade Estática , Dedos de Zinco
12.
Biophys J ; 110(3): 534-544, 2016 Feb 02.
Artigo em Inglês | MEDLINE | ID: mdl-26840719

RESUMO

The binding process of a protein with a DNA involves three stages: approach, encounter, and association. It has been known that the complexation of protein and DNA involves mutual conformational changes, especially for a specific sequence association. However, it is still unclear how the conformation and the information in the DNA sequences affects the binding process. What is the extent to which the DNA structure adopted in the complex is induced by protein binding, or is instead intrinsic to the DNA sequence? In this study, we used the multiscale simulation method to explore the binding process of a protein with DNA in terms of DNA sequence, conformation, and interactions. We found that in the approach stage the protein can bind both the major and minor groove of the DNA, but uses different features to locate the binding site. The intrinsic conformational properties of the DNA play a significant role in this binding stage. By comparing the specific DNA with the nonspecific in unbound, intermediate, and associated states, we found that for a specific DNA sequence, ∼40% of the bending in the association forms is intrinsic and that ∼60% is induced by the protein. The protein does not induce appreciable bending of nonspecific DNA. In addition, we proposed that the DNA shape variations induced by protein binding are required in the early stage of the binding process, so that the protein is able to approach, encounter, and form an intermediate at the correct site on DNA.


Assuntos
DNA/química , Fatores de Transcrição MEF2/metabolismo , Sequência de Aminoácidos , Animais , Sequência de Bases , DNA/metabolismo , Humanos , Fatores de Transcrição MEF2/química , Dados de Sequência Molecular , Ligação Proteica
13.
J Phys Chem Lett ; 6(14): 2733-7, 2015 Jul 16.
Artigo em Inglês | MEDLINE | ID: mdl-26207171

RESUMO

Intermolecular ion pairs (salt bridges) are crucial for protein-DNA association. For two protein-DNA complexes, we demonstrate that the ion pairs of protein side-chain NH3+ and DNA phosphate groups undergo dynamic transitions between distinct states in which the charged moieties are either in direct contact or separated by water. While the crystal structures of the complexes show only the solvent-separated ion pair (SIP) state for some interfacial lysine side chains, our NMR hydrogen-bond scalar coupling data clearly indicate the presence of the contact ion pair (CIP) state for the same residues. The 0.6-µs molecular dynamics (MD) simulations confirm dynamic transitions between the CIP and SIP states. This behavior is consistent with our NMR order parameters and scalar coupling data for the lysine side chains. Using the MD trajectories, we also analyze the free energies of the CIP-SIP equilibria. This work illustrates the dynamic nature of short-range electrostatic interactions in DNA recognition by proteins.


Assuntos
DNA/química , Proteínas/química , Eletricidade Estática , Ligação de Hidrogênio , Simulação de Dinâmica Molecular , Ressonância Magnética Nuclear Biomolecular , Ligação Proteica
14.
Zhonghua Gan Zang Bing Za Zhi ; 23(1): 9-12, 2015 Jan.
Artigo em Chinês | MEDLINE | ID: mdl-25751379

RESUMO

OBJECTIVE: To explore the antiviral efficacy, safety and protective ability against mother-to-infant transmission of telbivudine in pregnant patients with chronic hepatitis B (CHB) during the first trimester. METHODS: Eighty four gravid women who were diagnosed with CHB, in their first trimester of pregnancy, and had refused to terminate their pregnancies were enrolled; all study participants were clinically classified as active hepatitis cases with positivity for both hepatitis B surface antigen (HBsAg) and hepatitis B e antigen (HBeAg), HBV DNA more than or equal to 107 copies/mL and serum level of alanine aminotarnsferase (ALT) of more than or equal to 4 ULN.Patients with YMDD mutations were excluded from the study. The study participants were divided into a telbivudine treatment group (n=43; administered in the first trimester of pregnancy) and a control group (n=41, consisting of patients who refused to take antivirals). All babies bom to the women in both groups of the study received standard immune prevention (anti-hepatitis B immunoglobulin plus hepatitis B vaccine) and artificial feeding.Data recorded for the women during pregnancy included clinical findings for tests of hepatic and renal function, myocardial enzymes, blood and urine clinical parameters, hepatitis B virus makers and HBV DNA, as well as notation of any adverse reactions. The neonates were evaluated for presence of HBV infection, parameters of growth and development, presence of complications, and Apgar score. At 6 and 12 months old, all infants were evaluated for HBV DNA level and HBsAg presence. RESULTS: The genetic variant rtM204I was detected in one of the women in the treatment group at 36 weeks of pregnancy. One woman in the control group developed severe hepatitis at 28 weeks of pregnancy and was put on the telbivudine treatment The treatment group showed greater recovery rates of ALT than the control group at 12 weeks of pregnancy (62.8% vs.29.3%, P=0.002), 24 weeks of pregnancy (76.7% vs.46.3%, P=0.000), and at ante partum (88.1% vs.60.0%, P=0.004). The treatment group also showed greater HBV DNA-negative conversion rates at 12 weeks of pregnancy (20.9% vs.0, P=0.006), at 24 weeks of pregnancy (37.2% vs.0, P=0.001) and at ante partum (78.6% vs.0, P=0.000), and greater HBeAg seroconversion rates at 12 weeks of pregnancy (2.3% vs.0, P=1.000), at 24 weeks of pregnancy (9.3% vs.0, P=0.116) and at ante partum (2 1.4% vs.0, P=0.002). The HBsAg-positive rates and HBV DNA-positive rates among the infants born to the mothers in the treatment and control groups, respectively, were 2.4% vs.17.5% (P=0.027) at birth, 0 vs.17.5% (P=0.005)at 6 months old and 0 vs.17.5% (P=0.005) at 12 months old. The Apgar scores were not significantly different for the children born to the mothers from the two groups, and all the children showed parameters of growth development within normal limits. CONCLUSION: Telbivudine administration in the first trimester had a good antiviral curative effect and effectively blocked mother-to-infant transmission in women with CHB. The treatment was safe, causing no obvious adverse reaction in the gravid women or developmental effects on the infants.


Assuntos
Hepatite B Crônica , Primeiro Trimestre da Gravidez , Antivirais , DNA Viral , Feminino , Vacinas contra Hepatite A , Vacinas contra Hepatite B , Antígenos E da Hepatite B , Vírus da Hepatite B , Humanos , Lactente , Recém-Nascido , Transmissão Vertical de Doenças Infecciosas , Relações Mãe-Filho , Mutação , Gravidez , Complicações Infecciosas na Gravidez , Telbivudina , Timidina/análogos & derivados , Vacinas Combinadas
15.
Asian Pac J Cancer Prev ; 13(5): 1873-5, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22901139

RESUMO

OBJECTIVE: To compare the complications of peripherally inserted central catheters (PICC) by a modified Seldinger technique under ultrasound guidance or the conventional (peel-away cannula) technique. METHODS: From February to December of 2010, cancer patients who received PICC at the Department of Chemotherapy in Jiangsu Cancer Hospital were recruited into this study, and designated UPICC if their PICC lines were inserted under ultrasound guidance, otherwise CPICC if were performed by peel-away cannula technique. The rates of successful placement, hemorrhage around the insertion area, phlebitis, comfort of the insertion arm, infection and thrombus related to catheterization were analyzed and compared on days 1, 5 and 6 after PICC and thereafter. RESULTS: A total of 180 cancer patients were recruited, 90 in each group. The rates of successful catheter placement between two groups differed with statistical significance (P<0.05), favoring UPICC. More phlebitis and finger swelling were detected in the CPICC group (P<0.05). From day 6 to the date the catheter was removed and thereafter, more venous thrombosis and a higher rate of discomfort of insertion arms were also observed in the CPICC group. CONCLUSION: Compared with CPICC, UPICC could improve the rate of successful insertion, reduce catheter related complications and increase comfort of the involved arm, thus deserving to be further investigated in randomized clinical studies.


Assuntos
Cateterismo Venoso Central/efeitos adversos , Cateterismo Periférico/efeitos adversos , Cateteres de Demora , Neoplasias/complicações , Complicações Pós-Operatórias , Ultrassonografia de Intervenção , Adulto , Idoso , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Estadiamento de Neoplasias , Neoplasias/terapia , Flebite/diagnóstico , Flebite/etiologia , Prognóstico , Trombose/diagnóstico , Trombose/etiologia , Adulto Jovem
16.
Biophys J ; 101(5): 1139-47, 2011 Sep 07.
Artigo em Inglês | MEDLINE | ID: mdl-21889451

RESUMO

Protein-DNA recognition of a nonspecific complex is modeled to understand the nature of the transient encounter states. We consider the structural and energetic features and the role of water in the DNA grooves in the process of protein-DNA recognition. Here we have used the nuclease domain of colicin E7 (N-ColE7) from Escherichia coli in complex with a 12-bp DNA duplex as the model system to consider how a protein approaches, encounters, and associates with DNA. Multiscale simulation studies using Brownian dynamics and molecular-dynamics simulations were performed to provide the binding process on multiple length- and timescales. We define the encounter states and identified the spatial and orientational aspects. For the molecular length-scales, we used molecular-dynamics simulations. Several intermediate binding states were found, which have different positions and orientations of protein around DNA including major and minor groove orientations. The results show that the contact number and the hydrated interfacial area are measures that facilitate better understanding of sequence-independent protein-DNA binding landscapes and pathways.


Assuntos
Colicinas/metabolismo , DNA/metabolismo , Simulação de Dinâmica Molecular , Motivos de Aminoácidos , Pareamento de Bases , Colicinas/química , DNA/química , Desoxirribonucleases/metabolismo , Escherichia coli/enzimologia , Ligação Proteica , Estrutura Terciária de Proteína , Eletricidade Estática , Especificidade por Substrato , Termodinâmica
18.
J Phys Chem B ; 113(2): 511-21, 2009 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-19053714

RESUMO

The monomer and dimer of the bacterium Serratia marcescens endonuclease (SMnase) are each catalytically active, and the two subunits of the dimer function independently of each other. Nature, however, chooses the dimer form instead of the monomer. In order to explain this, we performed molecular dynamics (MD) simulations of both model-built complexes of a subunit of SMnase and the dimer with DNA in aqueous solution. We estimated the electrostatic binding energy, analyzed the distribution and dynamics of water around the complexes, identified water clusters in the protein, and related the dynamics of water to the protein's function. We find that the dimer form has an electrostatic advantage over the monomer to associate with DNA. Although Mg(2+) remains hexa-coordinated during the simulation, the binding pathway of DNA to Mg(2+) changes from inner-sphere binding in the monomer to outer-sphere in the dimer, which may be more energetically favorable. In addition, two water clusters in the active site of each monomer and in the dimer complex were identified and localized in two regions, named the "stabilizing" and "working" regions. Water in the "working" region in the dimer complex has larger fluctuations than that in the monomer.


Assuntos
Endonucleases/química , Endonucleases/metabolismo , Multimerização Proteica , Serratia marcescens/enzimologia , Domínio Catalítico , Simulação por Computador , DNA/química , DNA/metabolismo , Magnésio/química , Magnésio/metabolismo , Modelos Moleculares , Ligação Proteica , Estrutura Quaternária de Proteína , Estrutura Terciária de Proteína , Eletricidade Estática , Água/química
19.
Biopolymers ; 85(3): 241-52, 2007 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-17133507

RESUMO

The dynamics and structure of Serratia marcescens endonuclease and its neighboring solvent are investigated by molecular dynamics (MD). Comparisons are made with structural and biochemical experiments. The dimer form is physiologic and functions more processively than the monomer. We previously found a channel formed by connected clusters of waters from the active site to the dimer interface. Here, we show that dimerization clearly changes correlations in the water structure and dynamics in the active site not seen in the monomer. Our results indicate that water at the active sites of the dimer is less affected compared with bulk solvent than in the monomer where it has much slower characteristic relaxation times. Given that water is a required participant in the reaction, this gives a clear advantage to dimerization in the absence of an apparent ability to use both active sites simultaneously.


Assuntos
Endonucleases/química , Endonucleases/metabolismo , Serratia marcescens/enzimologia , Água/química , Água/metabolismo , Sítios de Ligação , Cristalografia por Raios X , Dimerização , Ligação de Hidrogênio , Magnésio/química , Magnésio/metabolismo , Modelos Moleculares , Ligação Proteica , Estrutura Terciária de Proteína , Fatores de Tempo
20.
Proteins ; 62(4): 982-95, 2006 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-16355414

RESUMO

The monomer and dimer of the bacterium Serratia marcescens endonuclease (SMnase) are each catalytically active and the two subunits of the dimer function independently of each other. Specific interfacial waters may play a role in stability, complex formation, and functionality. We performed molecular dynamics simulations of both a subunit of SMnase and its model built complex with DNA and analyzed the relation of the hydration sites to the catalytic mechanism. It was found that the binding of DNA has little influence on the global hydration properties of the protein, including occupancy and water residence time distributions. DNA and protein recognition in our model mainly involves direct contacts by hydrogen bond and hydrophobic interactions. Water-mediated contacts exist, but are less common. Three interior water clusters were identified for SMnase. One cluster around the active site in the monomer-DNA complex shows relatively strong interactions between hydration sites as well as between the sites and the biomolecules. The simulated cluster properties agreed well with experimental data. The magnesium ion shows ligand exchange. Although Mg2+ keeps six ligands during the entire simulation, upon the binding of DNA, Asn119 loses its coordination with Mg2+, while one nonbridging oxygen of the phosphate of a DNA residue and two oxygen atoms of the side chain of Glu127 become the ligands. Waters in a nearby cluster exchange and participate in the resolvation of groups in the presence of DNA. Water thus not only participates in the cleavage of DNA but also can stabilize the transition state and the leaving groups in our model.


Assuntos
Endodesoxirribonucleases/química , Endonucleases/química , Endorribonucleases/química , Complexos Multiproteicos/química , Serratia marcescens/enzimologia , Sequência de Bases , Sítios de Ligação , Endodesoxirribonucleases/metabolismo , Endonucleases/metabolismo , Endorribonucleases/metabolismo , Modelos Moleculares , Complexos Multiproteicos/metabolismo , Oligodesoxirribonucleotídeos/química , Oligodesoxirribonucleotídeos/metabolismo , Estrutura Secundária de Proteína , Solventes , Especificidade por Substrato , Água
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA