Estimating population parameters of broadnose sevengill sharks (Notorynchus cepedianus) using photo identification capture-recapture.

The broadnose sevengill shark (Notorynchus cepedianus) is a common high trophic-level predator around coastal New Zealand. Data on the ecology of the species in New Zealand are severely lacking, and anthropogenic impacts are unquantified. To partially address this, the authors undertook a study of the demographics of a population at Stewart Island. Sampling trips were carried out seasonally from winter 2016 to spring 2017. A baited underwater video system (BUV) was deployed on 133 occasions (mean = 22.2 deployments per season) in a shallow coastal embayment to capture underwater video of N. cepedianus for photo identification of individuals. N. cepedianus was detected on all but one deployment. Images extracted from video recorded the presence of 149 different individuals. Capture-recapture analysis of these data using robust design methods indicated a seasonal trend in abundance of the population using the study area, ranging from 34 (95% C.I. = 21-55) during winter 2016, to 94 (95% C.I. = 44-199) during spring 2017. This study presents the first data on demographic parameters of N. cepedianus in New Zealand.

Using a recreational grade echosounder to quantify the potential prey field of coastal predators.

Quantifying the distribution of prey greatly improves models of habitat use by marine predators and can assist in determining threats to both predators and prey. Small epipelagic fishes are important prey for many predators yet their distribution is difficult to quantify due to extreme patchiness. This study explores the use of recreational grade echosounders (RGE) to quantify school characteristics of epipelagic fish and link their distribution to that of their predators at Banks Peninsula, New Zealand. The hydro-acoustic system was ground-truthed with 259 schools of epipelagic fish. During 2015 and 2016, 136 hydro-acoustic surveys were conducted with concurrent observations of Hector's dolphin (Cephalorhynchus hectori) and little penguins (Eudyptula minor). The relative abundance of the two predator species during surveys was modelled according to the relative abundance of potential prey using generalised additive mixed models. Schools of epipelagic fish were readily detected by the RGE system and were more abundant in summer compared to winter. The models performed well, explaining 43% and 37% of the deviance in relative abundances of dolphins and penguins respectively. This is the first study to link the distribution of Hector's dolphin to that of their epipelagic prey and confirms the utility of RGE in studies of habitat use in marine predators. Limitations associated with a lack of formal acoustic calibration and data formatting can be overcome and would make RGE valuable, inexpensive tools for investigating variability in populations of small pelagic fishes.

A simulation study of acoustic-assisted tracking of whales for mark-recapture surveys.

Collecting enough data to obtain reasonable abundance estimates of whales is often difficult, particularly when studying rare species. Passive acoustics can be used to detect whale sounds and are increasingly used to estimate whale abundance. Much of the existing effort centres on the use of acoustics to estimate abundance directly, e.g. analysing detections in a distance sampling framework. Here, we focus on acoustics as a tool incorporated within mark-recapture surveys. In this context, acoustic tools are used to detect and track whales, which are then photographed or biopsied to provide data for mark-recapture analyses. The purpose of incorporating acoustics is to increase the encounter rate beyond using visual searching only. While this general approach is not new, its utility is rarely quantified. This paper predicts the "acoustically-assisted" encounter rate using a discrete-time individual-based simulation of whales and survey vessel. We validate the simulation framework using existing data from studies of sperm whales. We then use the framework to predict potential encounter rates in a study of Antarctic blue whales. We also investigate the effects of a number of the key parameters on encounter rate. Mean encounter rates from the simulation of sperm whales matched well with empirical data. Variance of encounter rate, however, was underestimated. The simulation of Antarctic blue whales found that passive acoustics should provide a 1.7-3.0 fold increase in encounter rate over visual-only methods. Encounter rate was most sensitive to acoustic detection range, followed by vocalisation rate. During survey planning and design, some indication of the relationship between expected sample size and effort is paramount; this simulation framework can be used to predict encounter rates and establish this relationship. For a case in point, the simulation framework indicates unequivocally that real-time acoustic tracking should be considered for quantifying the abundance of Antarctic blue whales via mark-recapture methods.

Echolocation signals of Heaviside's dolphins (Cephalorhynchus heavisidii).

Field recordings of echolocation signals produced by Heaviside's dolphins (Cephalorhynchus heavisidii) were made off the coast of South Africa using a hydrophone array system. The system consisted of three hydrophones and an A-tag (miniature stereo acoustic data-logger). The mean centroid frequency was 125 kHz, with a -3 dB bandwidth of 15 kHz and -10 dB duration of 74 µs. The mean back-calculated apparent source level was 173 dB re 1 µPa(p.-p.). These characteristics are very similar to those found in other Cephalorhynchus species, and such narrow-band high-frequency echolocation clicks appear to be a defining characteristic of the Cephalorhynchus genus. Click bursts with very short inter-click intervals (up to 2 ms) were also recorded, which produced the "cry" sound reported in other Cephalorhynchus species. Since inter-click intervals correlated positively to click duration and negatively to bandwidth, Heaviside's dolphins may adjust their click duration and bandwidth based on detection range. The bimodal distribution of the peak frequency and stable bimodal peaks in spectra of individual click suggest a slight asymmetry in the click production mechanism.

Segmentation and reconstruction of vascular structures for 3D real-time simulation.

We propose a technique to obtain accurate and smooth surfaces of patient specific vascular structures, using two steps: segmentation and reconstruction. The first step provides accurate and smooth centerlines of the vessels, together with cross section orientations and cross section fitting. The initial centerlines are obtained from a homotopic thinning of the vessels segmented using a level set method. In addition to circle fitting, an iterative scheme fitting ellipses to the cross sections and correcting the centerline positions is proposed, leading to a strong improvement of the cross section orientations and of the location of the centerlines. The second step consists of reconstructing the surface based on this data, by generating a set of topologically preserved quadrilateral patches of branching tubular structures. It improves Felkel's meshing method (Felkel et al., 2004) by: allowing a vessel to have multiple parents and children, reducing undersampling artifacts, and adapting the cross section distribution. Experiments, on phantom and real datasets, show that the proposed technique reaches a good balance in terms of smoothness, number of triangles, and distance error. This technique can be applied in interventional radiology simulations, virtual endoscopy and in reconstruction of smooth and accurate three-dimensional models for use in simulation.

CT scan merging to enhance navigation in interventional radiology simulation.

We present a method to merge two distinct CT scans acquired from different patients such that the second scan can supplement the first when it is missing necessary supporting anatomy. The aim is to provide vascular intervention simulations with full body anatomy. Often, patient CT scans are confined to a localised region so that the patient is not exposed to more radiation than necessary and to increase scanner throughput. Unfortunately, this localised scanning region may be limiting for some applications where surrounding anatomy may be required and where approximate supporting anatomy is acceptable. The resulting merged scan can enhance body navigation simulations with X-ray rendering by providing a complete anatomical reference which may be useful in training and rehearsal. An example of the use of our CT scan merging technique in the field of interventional radiology is described.

The Social Work Assessment Tool (SWAT).

This paper reports on the last of three National Hospice and Palliative Care Organization initiatives to move hospice and palliative care social workers into the patient/family outcomes arena: the development of the Social Work Assessment Tool. The experience of a team of practitioners and researchers is described, including results of two pilot studies and subsequent SWAT revisions. The major focus is on the current model performance improvement project, in which 19 social workers from 14 hospice and palliative care programs used the SWAT with 101 patients and 81 primary caregivers for a median of 44 days. Quantitative analysis indicated significant improvement in SWAT scores for patients from the first to the second social work visit (t = -2.60, df = 47, p .01). Qualitative interviewing of the social workers indicated some lack of readiness in the field to conduct quantitative outcomes measurement. Additional measures are needed in addition to the SWAT, including qualitative measures, and measures of mezzo and macro practice. Participants indicated that the SWAT was appropriate for use with economically and culturally diverse clients.

A segmentation and reconstruction technique for 3D vascular structures.

In the context of stroke therapy simulation, a method for the segmentation and reconstruction of human vasculature is presented and evaluated. Based on CTA scans, semi-automatic tools have been developed to reduce dataset noise, to segment using active contours, to extract the skeleton, to estimate the vessel radii and to reconstruct the associated surface. The robustness and accuracy of our technique are evaluated on a vascular phantom scanned in different orientations. The reconstructed surface is compared to a surface generated by marching cubes followed by decimation and smoothing. Experiments show that the proposed technique reaches a good balance in terms of smoothness, number of triangles, and distance error. The reconstructed surface is suitable for real-time simulation, interactive navigation and visualization.