Comparative evaluation of three real-time polymerase chain reaction assays to detect Myxobolus cerebralis.

OBJECTIVE: We sought to evaluate accurate and reproducible detection of Myxobolus cerebralis (Mc), the causative agent of whirling disease, by using nested polymerase chain reaction (nPCR) and three previously established real-time quantitative PCR (qPCR) assays: K18S (Kelley 18S), C18S (Cavender 18S), and Hsp70 (heat shock protein 70). We used a "fit for purpose" approach combined with intra- and interlaboratory testing to identify a molecular testing method that would be equivalent to the currently accepted nPCR procedure for Mc. METHODS: Assay performance was compared using a combination of intra- and interlaboratory testing that used synthetic gBlocks along with naturally and experimentally infected fish tissue. North American isolates representing geographically distinct locations were also tested using all three assays. RESULT: The K18S and C18S assays exhibited high assay sensitivity, intra- and interlaboratory repeatability of sample replicates, and reproducible identification of all test samples across multiple laboratories. In contrast, the Hsp70 assay failed to detect several positive samples at low DNA concentrations during intra- and interlaboratory testing. The K18S assay was the only procedure that demonstrated perfect detection accuracy when testing geographically distinct Mc isolates. Results demonstrated the K18S assay is robust under variable test conditions, is more accurate than the C18S and Hsp70 assays, and provides detection capabilities equivalent to those of the currently accepted nPCR confirmation assay "gold standard" that is described in the American Fisheries Society-Fish Health Section (AFS-FHS) Blue Book. CONCLUSION: The "fit for purpose" approach and preliminary completion of the World Organization for Animal Health validation pathway demonstrate that the K18S assay provides an alternate method for Mc testing. This work provides the foundation for acceptance of the K18S assay into the AFS-FHS Blue Book as a standardized test procedure for Mc.

Prevalence and distribution of Renibacterium salmoninarum, causative agent of bacterial kidney disease, in wild trout fisheries in Colorado.

Detections of Renibacterium salmoninarum in Colorado USA fish hatcheries have become more frequent in recent years, including one disease outbreak that originated with a wild broodstock. Our objectives were to document the prevalence and distribution of R. salmoninarum in Colorado's wild trout fisheries, investigate variables that influence that distribution, and evaluate the effectiveness of common testing methods on non-anadromous trout. We sampled wild trout across Colorado and tested kidney tissue with enzyme-linked immunosorbent assay (ELISA), quantitative polymerase chain reaction (qPCR), nested polymerase chain reaction (nPCR), and direct fluorescent antibody test (DFAT). Screening with ELISA showed high prevalence of R. salmoninarum among fish populations, but antigen levels were low. No clinical disease was observed in any of the fish sampled despite the antigen of R. salmoninarum being common. Antigen levels measured by ELISA increased in smaller streams with lower historic fish stocking rates. Brook trout Salvelinus fontinalis had the highest prevalence of the bacterium among fish species and highest ELISA antigen levels. The distribution of brook trout in the smallest streams may help explain the patterns of R. salmoninarum across the landscape. The most effective assays for screening wild trout were qPCR and ELISA; DFAT was inconsistent for bacterial levels encountered in wild trout and generally uninformative. Additionally, qPCR and ELISA can provide quantitative information about bacteria levels. The bacterium R. salmoninarum is ubiquitous in Colorado trout fisheries but is generally found at low levels. Active infections are rare and overt bacterial kidney disease appears more common in Colorado hatcheries than in wild fish.

Development of a quantitative polymerase chain reaction assay for detection of the aetiological agents of piscine lactococcosis.

Piscine lactococcosis is an emergent bacterial disease that is associated with high economic losses in many farmed and wild aquatic species worldwide. Early and accurate detection of the causative agent of piscine lactococcosis is essential for management of the disease in fish farms. In this study, a TaqMan quantitative polymerase chain reaction (qPCR) targeting the 16S-23S rRNA internal transcribed spacer region was developed and validated. Validation of the qPCR was performed with DNA of previously typed L. petauri and L. garvieae recovered from different aquatic hosts from distinct geographical locations, closely related bacterial species and common pathogens in trout aquaculture. Further diagnostic sensitivity and specificity was investigated by screening of fish, water and faecal samples. The developed qPCR assay showed high specificity, sensitivity and accuracy in detection of L. petauri and L. garvieae with lack of signals from non-target pathogens, and in screening of rainbow trout (Oncorhynchus mykiss) posterior kidney and environmental samples. The detection limit of the qPCR was four amplicon copies. Moreover, the sensitivity of the qPCR assay was not affected by presence of non-target DNA from either fish or environmental samples. The robustness, specificity and sensitivity of the developed qPCR will facilitate fast and accurate diagnosis of piscine lactococcosis to establish appropriate control measures in fish farms and aquaria.

Electron Microscopy Imaging of Zinc Soaps Nucleation in Oil Paint.

Using the recently developed techniques of electron tomography, we have explored the first stages of disfiguring formation of zinc soaps in modern oil paintings. The formation of complexes of zinc ions with fatty acids in paint layers is a major threat to the stability and appearance of many late 19th and early 20th century oil paintings. Moreover, the occurrence of zinc soaps in oil paintings leading to defects is disturbingly common, but the chemical reactions and migration mechanisms leading to large zinc soap aggregates or zones remain poorly understood. State-of-the-art scanning (SEM) and transmission (TEM) electron microscopy techniques, primarily developed for biological specimens, have enabled us to visualize the earliest stages of crystalline zinc soap growth in a reconstructed zinc white (ZnO) oil paint sample. In situ sectioning techniques and sequential imaging within the SEM allowed three-dimensional tomographic reconstruction of sample morphology. Improvements in the detection and discrimination of backscattered electrons enabled us to identify local precipitation processes with small atomic number contrast. The SEM images were correlated to low-dose and high-sensitivity TEM images, with high-resolution tomography providing unprecedented insight into the structure of nucleating zinc soaps at the molecular level. The correlative approach applied here to study phase separation, and crystallization processes specific to a problem in art conservation creates possibilities for visualization of phase formation in a wide range of soft materials.

Surface-energy engineered Bi-doped SnTe nanoribbons with weak antilocalization effect and linear magnetoresistance.

The rational design of semiconductor nanocrystals with well-defined surfaces is a crucial step towards the realization of next-generation photodetectors, and thermoelectric and spintronic devices. SnTe nanocrystals, as an example, are particularly attractive as a type of topological crystalline insulator, where surface facets determine their surface states. However, most of the available SnTe nanocrystals are dominated by thermodynamically stable {100} facets, and it is challenging to grow uniform nanocrystals with {111} facets. In this study, guided by surface-energy calculations, we employ a chemical vapour deposition approach to fabricate Bi doped SnTe nanostructures, in which their surface facets are tuned by Bi doping. The obtained Bi doped SnTe nanoribbons with distinct {111} surfaces show a weak antilocalization effect and linear magnetoresistance under high magnetic fields, which demonstrate their great potential for future spintronic applications.

Planar Vacancies in Sn1-xBixTe Nanoribbons.

Vacancy engineering is a crucial approach to manipulate physical properties of semiconductors. Here, we demonstrate that planar vacancies are formed in Sn1-xBixTe nanoribbons by using Bi dopants via a facile chemical vapor deposition. Through combination of sub-angstrom-resolution imaging and density functional theory calculations, these planar vacancies are found to be associated with Bi segregations, which significantly lower their formation energies. The planar vacancies exhibit polymorphic structures with local variations in the lattice relaxation level, determined by their proximity to the nanoribbon surface. Such polymorphic planar vacancies, in conjunction with Bi dopants, trigger distinct localized electronic states, offering platforms for device applications of ternary chalcogenide materials.

Design of Low Pt Concentration Electrocatalyst Surfaces with High Oxygen Reduction Reaction Activity Promoted by Formation of a Heterogeneous Interface between Pt and CeO(x) Nanowire.

Pt-CeO(x) nanowire (NW)/C electrocatalysts for the improvement of oxygen reduction reaction (ORR) activity on Pt were prepared by a combined process involving precipitation and coimpregnation. A low, 5 wt % Pt-loaded CeO(x) NW/C electrocatalyst, pretreated by an optimized electrochemical conditioning process, exhibited high ORR activity over a commercially available 20 wt % Pt/C electrocatalyst although the ORR activity observed for a 5 wt % Pt-loaded CeO(x) nanoparticle (NP)/C was similar to that of 20 wt % Pt/C. To investigate the role of a CeO(x) NW promotor on the enhancement of ORR activity on Pt, the Pt-CeO(x) NW interface was characterized by using hard X-ray photoelectron spectroscopy (HXPS), transmission electron microscopy (TEM), and electron energy loss spectroscopy (EELS). Microanalytical data obtained by these methods were discussed in relation to atomistic simulation performed on the interface structures. The combined techniques of HXPS, TEM-EELS, and atomistic simulation indicate that the Pt-CeO(x) NW interface in the electrocatalyst contains two different defect clusters: Frenkel defect clusters (i.e., 2Pt(i)(••) - 4O(i)″ - 4V(o)(••) - V(Ce)″″) formed in the surface around the Pt-CeO(x) NW interface and Schottky defect clusters (i.e., (Pt(Ce)″ - 2V(O)(••) - 2Ce(Ce)') and (Pt(Ce)″ - V(O)(••))) which appear in the bulk of the Pt-CeO(x) NW interface similarly to Pt-CeO(x) NP/C. It is concluded that the formation of both Frenkel defect clusters and Schottky defect clusters at the Pt-CeO(x) NW heterointerface contributes to the promotion of ORR activity and permits the use of lower Pt-loadings in these electrocatalysts.

Orientation Dependence of Electromechanical Characteristics of Defect-free InAs Nanowires.

Understanding the electrical properties of defect-free nanowires with different structures and their responses under deformation are essential for design and applications of nanodevices and strain engineering. In this study, defect-free zinc-blende- and wurtzite-structured InAs nanowires were grown using molecular beam epitaxy, and individual nanowires with different structures and orientations were carefully selected and their electrical properties and electromechanical responses were investigated using an electrical probing system inside a transmission electron microscope. Through our careful experimental design and detailed analyses, we uncovered several extraordinary physical phenomena, such as the electromechanical characteristics are dominated by the nanowire orientation, rather than its crystal structure. Our results provide critical insights into different responses induced by deformation of InAs with different structures, which is important for nanowire-based devices.

Defect structure analysis of heterointerface between Pt and CeOx promoter on Pt electro-catalyst.

Pt-CeOx/C (1.5 ≤ x ≤ 2) electro-catalyst is one of the most promising cathode materials for use in polymer membrane electrolyte fuel cells. To clarify the microstructure of Pt-CeOx heterointerface, we prepared Pt-loaded CeOx thin film on conductive SrTiO3 single crystal substrate by using a stepwise process of pulse laser deposition method for the preparation of epitaxial growth CeOx film followed by an impregnation method which loaded the Pt particles on the CeOx film. The electrochemistry observed for the Pt-loaded CeOx thin film on the conductive single crystal substrate was examined by using cyclic voltammetry in 0.5 M H2SO4 aqueous solution, and a cross-sectional image of the aforementioned Pt-CeOx thin film electrode was observed using a transmission electron microscope. The electrochemistry observed for Pt-CeOx thin film electrode clearly showed the promotion effect of CeOx. Also, the microanalysis indicated that unique, large clusters that consisted of C-type rare-earth-like structures were formed in the Pt-CeOx interface by a strong interaction between Pt and CeOx. The present combination analysis of the electrochemistry, microanalysis, and atomistic simulation indicates that the large clusters (i.e., 12 (PtCe''-Vo(••)) + 2 (PtCe''-2Vo(••)-2CeCe')) that were formed into the Pt-CeOx interface promoted the charge transfer between Pt surface and CeOx, suggesting that the oxygen reduction reaction activity on Pt can be maximized by fabrication of C-type rare-earth-like structure that consists of the aforementioned large clusters in the Pt-CeOx interfaces.

Rational design of Bi2Te3 polycrystalline whiskers for thermoelectric applications.

Bi2Te3 polycrystalline whiskers consisting of interconnected nanoplates have been synthesized through chemical transformation from In2Te3 polycrystalline whisker templates assembled by nanoparticles. The synthesized Bi2Te3 whiskers preserve the original one-dimensional morphology of the In2Te3, while the In2Te3 nanoparticles can be transformed into the Bi2Te3 thin nanoplates, accompanied by the formation of high-density interfaces between nanoplates. The hot-pressed nanostructures consolidated from Bi2Te3 polycrystalline whiskers at 400 °C demonstrate a promising figure of merit (ZT) of 0.71 at 400 K, which can be attributed to their low thermal conductivity and relatively high electrical conductivity. The small nanoparticles inherited from the polycrystalline whiskers and high-density nanoparticle interfaces in the hot-pressed nanostructures contribute to the significant reduction of thermal conductivity. This study provides a rational chemical transformation approach to design and synthesize polycrystalline microstructures for enhanced thermoelectric performances.

Indium selenides: structural characteristics, synthesis and their thermoelectric performances.

Indium selenides have attracted extensive attention in high-efficiency thermoelectrics for waste heat energy conversion due to their extraordinary and tunable electrical and thermal properties. This Review aims to provide a thorough summary of the structural characteristics (e.g. crystal structures, phase transformations, and structural vacancies) and synthetic methods (e.g. bulk materials, thin films, and nanostructures) of various indium selenides, and then summarize the recent progress on exploring indium selenides as high-efficiency thermoelectric materials. By highlighting challenges and opportunities in the end, this Review intends to shine some light on the possible approaches for thermoelectric performance enhancement of indium selenides, which should open up an opportunity for applying indium selenides in the next-generation thermoelectric devices.

Microanalysis of a grain boundary's blocking effect in lanthanum silicate electrolyte for intermediate-temperature solid oxide fuel cells.

In order to study the grain boundary's (GB's) blocking effect in lanthanum silicate electrolyte, high density Al-doped apatite-type lanthanum silicate was synthesized and characterized by impedance spectroscopy, scanning electron microscopy, X-ray diffraction, and transmission electron microscopy. Microstructural characterization indicated that the GB's blocking effect was an intrinsic effect. Further microanalysis shows that the GB region is rich in La and poor in Si in comparing with the grain interior (GI). Our discussion suggested that the chemical variation from GI to GB, on the one hand, could degrade the GB region's conductivity; on the other hand, it introduced a strong space-charge effect at GBs. The latter was believed to play a dominant role in the GB's blocking effect.

Microstructural and chemical characterization of ordered structure in yttrium doped ceria.

The ordered structures in different doping levels (x = 0.1, 0.15, 0.2, 0.25, 0.3) of yttrium doped ceria (YDC, Ce(1-x)Y x O2-δ) electrolytes were investigated by electron diffraction, high-resolution transmission electron microscopy (TEM), scanning TEM, and electron energy loss spectroscopy. Oxygen vacancy ordering was experimentally confirmed within the ordered structures. With increasing the doping level, the concentration of trivalent Ce cations was increased in YDC samples and such trivalent Ce cations were supposed to mainly exist in the ordered structures. Based on our electron microscopic observation and microanalysis, a crystal model for the ordered structures is proposed.

Improvement of cathode performance on Pt-CeO(x) by optimization of electrochemical pretreatment condition for PEFC application.

Pt-CeO(x)/C electrocatalysts for the improvement of oxygen reduction reaction (ORR) activity on cathode were prepared by a combined process of precipitation and co-impregnation methods. The Pt-CeO(x)/C electrocatalysts pretreated by the optimized electrochemical conditioning process showed high ORR activity as compared with homemade Pt/C electrocatalyst. Also, it showed high stability in the cyclic voltammetry (CV) test up to 1000 cycles into 0.5 M H(2)SO(4) aqueous solution. On the basis of the data of cyclic voltammogram of 30 cyclic sweeps, X-ray photoelectron spectroscopy, electron energy loss spectroscopy, high resolution transmission electron microscope image, and selected area electron diffraction analysis, it is concluded that the Pt-CeO(x) heterointerface involving the defect cluster formed by using optimized electrochemical pretreatment conditions on Pt in Pt-CeO(x)/C electro-catalyst contributes to the promotion of ORR activity and retention of its stability in long CV tests up to 1000 cycles.

Metal stearate distributions in modern artists' oil paints: surface and cross-sectional investigation of reference paint films using conventional and synchrotron infrared microspectroscopy.

Zinc oxide is a prevalent industrial-age pigment that readily reacts with fatty acids in oil-based paints to form zinc carboxylates. Zinc stearate aggregates are associated with deterioration in late nineteenth and twentieth century paintings. The current study uses both conventional and synchrotron Fourier transform infrared spectroscopy (FT-IR) to investigate metal carboxylate composition in a range of naturally aged artists' oil paints and reference paint film draw-downs. The paints contain zinc oxide alone or in combination with lead white, titanium white, and aluminum stearate and are prepared with linseed and safflower oils. Attenuated total reflectance (ATR)-FT-IR using the conventional source identifies marked differences in carboxylate profiles between exposed and protected surfaces in a large number of samples. Synchrotron FT-IR microspectroscopy of thin paint cross-sections maps metal carboxylate distributions at high spatial resolution and resolves broad concentration gradients and micrometer-scale phase separation of carboxylate species. Aluminum stearate, a common paint additive, is found to influence the distribution of zinc carboxylates more strongly than pigment composition or oil type. The presence of aluminum stearate results in higher concentrations and more pronounced separation of saturated C16 and C18 chain zinc carboxylates in the margin of paint nearest the polyester substrate. The presence of aluminum stearate in association with zinc oxide has a clear influence on zinc carboxylate formation and distribution, with potential implications for long term stability of vulnerable paintings.

Optimization of ionic conductivity in solid electrolytes through dopant-dependent defect cluster analysis.

Atomistic simulation based on an energy minimization technique has been carried out to investigate defect clusters of R(2)O(3) (R = La, Pr, Nd, Sm, Gd, Dy, Y, Yb) solid solutions in fluorite CeO(2). Defect clusters composed of up to six oxygen vacancies and twelve accompanied dopant cations have been simulated and compared. The binding energy of defect clusters increases as a function of the cluster size. A highly symmetric dumbbell structure can be formed by six oxygen vacancies, which is considered as a basic building block for larger defect clusters. This is also believed to be a universal vacancy structure in an oxygen-deficient fluorite lattice. Nevertheless, the accurate positions of associated dopants depend on the dopant radius. As a consequence, the correlation between dopant size and oxygen-ion conductivity has been elucidated based on the ordered defect cluster model. This study sheds light on the choice of dopants from a physical perspective, and suggests the possibility of searching for optimal solid electrolyte materials through atomistic simulations.

In vivo remineralization of acid-etched enamel in non-brushing areas as influenced by fluoridated orthodontic adhesive and toothpaste.

This study aimed to evaluate the in vivo remineralization of acid-etched enamel in non-brushing areas as influenced by fluoridated orthodontic adhesive and toothpaste. One hundred and twenty teeth from 30 volunteers were selected. The teeth were assigned to four treatments: no treatment (negative control); 37% phosphoric acid-etching (PAE) (positive control); PAE + resin-modified glass ionomer cement (RMGIC); and, PAE + composite resin. Patients brushed teeth with fluoridated (n = 15) or non-fluoridated (n = 15) toothpastes, so that etched enamel was protected with screens and it was not in contact with the brush bristles. Remineralization was evaluated by means of laser fluorescence (LF), environmental scanning electronic microscopy, and energy dispersive spectrometry after extraction. The LF means were compared by means of Wilcoxon and Mann Whitney tests. Environmental scanning electron microscopy scores were compared among the groups using a Kruskal Wallis test, whereas the Ca/P ratio was evaluated by means of an Analysis of Variance with subparcels (treatments) and Tukey's post-hoc test. There were no statistically significant differences between the tooth pastes and between the orthodontic adhesives evaluated. Most teeth presented only partial enamel remineralization. Therefore, the fluoride released by the RMGIC was not enough to cause increased crystal regrowth in the acid-etched enamel. The use of fluoridated toothpaste did not provide positive additional effect.

Structural evolution of GeMn/Ge superlattices grown by molecular beam epitaxy under different growth conditions.

GeMn/Ge epitaxial 'superlattices' grown by molecular beam epitaxy with different growth conditions have been systematically investigated by transmission electron microscopy. It is revealed that periodic arrays of GeMn nanodots can be formed on Ge and GaAs substrates at low temperature (approximately 70°C) due to the matched lattice constants of Ge (5.656 Å) and GaAs (5.653 Å), while a periodic Ge/GeMn superlattice grown on Si showed disordered GeMn nanodots with a large amount of stacking faults, which can be explained by the fact that Ge and Si have a large lattice mismatch. Moreover, by varying growth conditions, the GeMn/Ge superlattices can be manipulated from having disordered GeMn nanodots to ordered coherent nanodots and then to ordered nanocolumns.PACS: 75.50.Pp; 61.72.-y; 66.30.Pa; 68.37.L.

Ordered structures of defect clusters in gadolinium-doped ceria.

The nano-domain, with short-range ordered structure, has been widely observed in rare-earth-doped ceria. Atomistic simulation has been employed to investigate the ordering structure of the nano-domain, as a result of aggregation and segregation of dopant cations and the associated oxygen vacancies in gadolinium-doped ceria. It is found that the binding energy of defect cluster increases as a function of cluster size, which provides the intrinsic driving force for the defect cluster growth. However, the ordered structures of the defect clusters are different from the chain model as previously reported. Adjacent oxygen vacancies prefer to locate along <110>/2 lattice vector, which results in a unique stable structure (isosceles triangle) formation. Such isosceles triangle structure can act as the smallest unit of cluster growth to form a symmetric dumbbell structure. This unique dumbbell structure is hence considered as a building block for the development of larger defect clusters, leading to nano-domain formation in rare-earth-doped ceria.

Superstructure formation and variation in Ni-GDC cermet anodes in SOFC.

The microstructures and spatial distributions of constituent elements at the anode in solid oxide fuel cells (SOFCs) have been characterized by analytical transmission electron microscopy (TEM). High resolution TEM observations demonstrate two different types of superstructure formation in grain interiors and at grain boundaries. Energy-filtered TEM elemental imaging qualitatively reveals that mixture zones exist at metal-ceramic grain boundaries, which is also quantitatively verified by STEM energy dispersive X-ray spectroscopy. It was apparent that both metallic Ni and the rare-earth elements Ce/Gd in gadolinium-doped ceria can diffuse into each other with equal diffusion lengths (about 100 nm). This will lead to the existence of mutual diffusion zones at grain boundaries, accompanied by a change in the valence state of the diffusing ions, as identified by electron energy-loss spectroscopy (EELS). Such mutual diffusion is believed to be the dominant factor that gives rise to superstructure formation at grain boundaries, while a different superstructure is formed at grain interiors, as a consequence solely of the reduction of Ce(4+) to Ce(3+) during H(2) treatment. This work will enhance the fundamental understanding of microstructural evolution at the anode, correlating with advancements in sample preparation in order to improve the performance of SOFC anodes.