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1.
Herz ; 37(1): 30-7, 2012 Feb.
Artigo em Alemão | MEDLINE | ID: mdl-22231550

RESUMO

Reducing cardiac mortality and improving quality of life are the main objectives of cardiac rehabilitation. In recent years, outpatient rehabilitation within easy patient reach has achieved the same status as inpatient rehabilitation. Outpatient rehabilitation permits close involvement of the patient's family and social environment, thus easing reintegration into everyday life. However, the health care system is not yet utilizing outpatient rehabilitation to its full potential. This contribution illustrates the principles of rehabilitation following myocardial infarction or for heart failure in an outpatient setting, as well as its potential and future development.


Assuntos
Assistência Ambulatorial/tendências , Insuficiência Cardíaca/reabilitação , Infarto do Miocárdio/reabilitação , Admissão do Paciente/tendências , Adulto , Idoso , Idoso de 80 Anos ou mais , Assistência Ambulatorial/economia , Terapia Combinada , Redução de Custos/tendências , Feminino , Previsões , Alemanha , Insuficiência Cardíaca/etiologia , Insuficiência Cardíaca/mortalidade , Mortalidade Hospitalar , Humanos , Masculino , Pessoa de Meia-Idade , Infarto do Miocárdio/etiologia , Infarto do Miocárdio/mortalidade , Programas Nacionais de Saúde/economia , Programas Nacionais de Saúde/tendências , Admissão do Paciente/economia , Prognóstico , Qualidade de Vida , Centros de Reabilitação/economia , Centros de Reabilitação/tendências , Comportamento de Redução do Risco , Ajustamento Social
2.
Biochem Soc Trans ; 34(Pt 1): 156-9, 2006 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-16417509

RESUMO

In Bradyrhizobium japonicum, the nitrogen-fixing soya bean endosymbiont and facultative denitrifier, three CRP (cAMP receptor protein)/FNR (fumarate and nitrate reductase regulatory protein)-type transcription factors [FixK(1), FixK(2) and NnrR (nitrite and nitric oxide reductase regulator)] have been studied previously in the context of the regulation of nitrogen fixation and denitrification. The gene expression of both fixK(1) and nnrR depends on FixK(2), which acts as a key distributor of the 'low-oxygen' signal perceived by the two-component regulatory system FixLJ. While the targets for FixK(1) are not known, NnrR transduces the nitrogen oxide signal to the level of denitrification gene expression. Besides these three regulators, the complete genome sequence of this organism has revealed the existence of 13 additional CRP/FNR-type proteins whose functions have not yet been studied. Based on sequence similarity and phylogenetic analysis, we discuss in this paper the peculiarities of these additional factors.


Assuntos
Bradyrhizobium/metabolismo , Proteínas Ferro-Enxofre/metabolismo , Receptores de Superfície Celular/metabolismo , Fatores de Transcrição/metabolismo , Bradyrhizobium/genética , Proteínas de Ligação a DNA/classificação , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Regulação Bacteriana da Expressão Gênica , Proteínas Ferro-Enxofre/genética , Nitrogênio/química , Nitrogênio/metabolismo , Oxigênio/metabolismo , Filogenia , Receptores de Superfície Celular/genética , Fatores de Transcrição/classificação , Fatores de Transcrição/genética
3.
Mol Genet Genomics ; 275(1): 55-67, 2006 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-16328374

RESUMO

The design and use of a pilot microarray for transcriptome analysis of the symbiotic, nitrogen-fixing Bradyrhizobium japonicum is reported here. The custom-synthesized chip (Affymetrix GeneChip) features 738 genes, more than half of which belong to a 400-kb chromosomal segment strongly associated with symbiosis-related functions. RNA was isolated following an optimized protocol from wild-type cells grown aerobically and microaerobically, and from cells of aerobically grown regR mutant and microaerobically grown nifA mutant. Comparative microarray analyses thus revealed genes that are transcribed in either a RegR- or a NifA-dependent manner plus genes whose expression depends on the cellular oxygen status. Several genes were newly identified as members of the RegR and NifA regulons, beyond genes, which had been known from previous work. A comprehensive transcription analysis was performed with one of the new RegR-controlled genes (id880). Expression levels determined by microarray analysis of selected NifA- and RegR-controlled genes corresponded well with quantitative real-time PCR data, demonstrating the high complementarity of microarray analysis to classical methods of gene expression analysis in B. japonicum. Nevertheless, several previously established members of the NifA regulon were not detected as transcribed genes by microarray analysis, confirming the potential pitfalls of this approach also observed by other authors. By and large, this pilot study has paved the way towards the genome-wide transcriptome analysis of the 9.1-Mb B. japonicum genome.


Assuntos
Bradyrhizobium/fisiologia , Regulação Bacteriana da Expressão Gênica/fisiologia , Genoma Bacteriano/fisiologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Perfilação da Expressão Gênica , Análise de Sequência com Séries de Oligonucleotídeos , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Simbiose/genética , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo
5.
Fortschr Med Orig ; 121(1): 27-32, 2003.
Artigo em Alemão | MEDLINE | ID: mdl-15117066

RESUMO

AIM: To evaluate the efficacy and tolerability of a single daily dose of a fixed combination of 95 mg metoprololsuccinate (MS) and 12.5 mg hydrochlorothiazide (HCTZ) in the first-line treatment of non-pretreated hypertensives, or additional (add-on) to ongoing antihypertensive medication. METHOD: 14,964 patients aged 18 years or older treated by 2808 family doctors in Germany were included in a noncontrolled observational study. Most patients had at least one concurrent disease or concomitant medication of one kind or another. The primary target parameters for efficacy was the lowering of the systolic blood pressure (SBP) and diastolic blood pressure (DBP) after 8 weeks and for tolerability the number of patients reporting adverse events (AE). RESULTS: 65.4% of the patients received MS/HCTZ in the form of first-line treatment, the remainder as add-on therapy. The mean blood pressure decrease for the overall group by the end of the study was -24.5/-13.6 mmHg (baseline: 166.7/97.3 mmHg; p < 0.0001 for SBP and DBP). 92.2% of the patients experienced a decrease in SBP of > or = 10 mmHg. The mean heart rate decreased by 10.2 beats (baseline 81.4; p < 0.0001). The blood pressure decreased both in patients receiving MS/HCTZ alone and in those receiving it as an add-on to other antihypertensives. Only 1.4 of the patients reported AE. CONCLUSION: The MS/HCTZ controlled release combination was safe, efficacious and well-tolerated both as first-line and add-on therapy for essential hypertension.


Assuntos
Anti-Hipertensivos/uso terapêutico , Hidroclorotiazida/administração & dosagem , Hipertensão/tratamento farmacológico , Metoprolol/análogos & derivados , Metoprolol/administração & dosagem , Adulto , Idoso , Pressão Sanguínea/efeitos dos fármacos , Preparações de Ação Retardada , Combinação de Medicamentos , Quimioterapia Combinada , Medicina de Família e Comunidade , Feminino , Seguimentos , Humanos , Hidroclorotiazida/efeitos adversos , Medicina Interna , Masculino , Metoprolol/efeitos adversos , Pessoa de Meia-Idade , Estudos Prospectivos
6.
Mol Microbiol ; 41(4): 787-800, 2001 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-11532144

RESUMO

In Bradyrhizobium japonicum, the nitrogen-fixing symbiont of soybeans, we have identified a haem uptake system, Hmu, that comprises a cluster of nine open reading frames. Predicted products of these genes include: HmuR, a TonB-dependent haem receptor in the outer membrane; HmuT, a periplasmic haem-binding protein; and HmuUV, an ABC transporter in the inner membrane. Furthermore, we identified homologues of ExbBD and TonB, that are required for energy transduction from the inner to the outer membrane. Mutant analysis and complementation tests indicated that HmuR and the ExbBD-TonB system, but not the HmuTUV transporter, are essential for haem uptake or haem acquisition from haemoglobin and leghaemoglobin. The TonB system seems to be specific for haem uptake as it is dispensable for siderophore uptake. Therefore, we propose the existence of a second TonB homologue functioning in the uptake of Fe-chelates. When tested on soybean host plants, hmuT-hmuR and exbD-tonB mutants exhibited wild-type symbiotic properties. Thus, haem uptake is not essential for symbiotic nitrogen fixation but it may enable B. japonicum to have access to alternative iron sources in its non-symbiotic state. Transcript analysis and expression studies with lacZ fusions showed that expression of hmuT and hmuR is induced under low iron supply. The same was observed in fur and irr mutant backgrounds although maximal induction levels were decreased. We conclude either that both regulators, Fur and Irr, independently mediate transcriptional control by iron or that a yet unknown iron regulatory system activates gene expression under iron deprivation. An A/T-rich cis-acting element, located in the promoter region of the divergently transcribed hmuTUV and hmuR genes, is possibly required for this type of iron control.


Assuntos
Bradyrhizobium/metabolismo , Heme/metabolismo , Receptores de Superfície Celular/metabolismo , Microbiologia do Solo , Sequência de Aminoácidos , Sequência de Bases , Transporte Biológico , Bradyrhizobium/genética , Bradyrhizobium/crescimento & desenvolvimento , Regulação Bacteriana da Expressão Gênica , Teste de Complementação Genética , Ferro/metabolismo , Dados de Sequência Molecular , Mutação , Fixação de Nitrogênio , Óperon/genética , Fenótipo , Regiões Promotoras Genéticas/genética , Receptores de Superfície Celular/química , Receptores de Superfície Celular/genética , Elementos de Resposta/genética , Homologia de Sequência de Aminoácidos , Glycine max/metabolismo , Glycine max/microbiologia , Simbiose , Sítio de Iniciação de Transcrição , Transcrição Gênica
7.
Mol Microbiol ; 39(5): 1186-98, 2001 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-11251836

RESUMO

Phosphatidylcholine (PC), the major membrane phospholipid in eukaryotes, is found in only some bacteria including members of the family Rhizobiaceae. For this reason, it has long been speculated that rhizobial PC might be required for a successful interaction of rhizobia with their legume host plants in order to allow the formation of nitrogen-fixing root nodules. A major pathway for PC formation in prokaryotes involves a threefold methylation of the precursor phosphatidylethanolamine (PE). Here, we report on the isolation of a Bradyrhizobium japonicum gene (pmtA) encoding the phospholipid N-methyltransferase PmtA. Upon expression of the bradyrhizobial pmtA gene in Escherichia coli, predominantly monomethylphosphatidylethanolamine was formed from PE. PmtA-deficient B. japonicum mutants still produced low levels of PC by a second methylation pathway. The amount of PC formed in such mutants (6% of total phospholipids) was greatly decreased compared with the wild type (52% of total phospholipids). Root nodules of soybean plants infected with B. japonicum pmtA mutants showed a nitrogen fixation activity of only 18% of the wild-type level. The interior colour of the nodules was beige instead of red, suggesting decreased amounts of leghaemoglobin. Moreover, ultrastructure analysis of these nodules demonstrated a greatly reduced number of bacteroids within infected plant cells. These data suggest that the biosynthesis of wild-type amounts of PC are required to allow for an efficient symbiotic interaction of B. japonicum with its soybean host plant.


Assuntos
Bradyrhizobium/enzimologia , Metiltransferases/genética , Fosfatidilcolinas/biossíntese , Proteínas de Bactérias , Sequência de Bases , Bradyrhizobium/genética , Membrana Celular/química , Membrana Celular/metabolismo , Clonagem Molecular , Escherichia coli/enzimologia , Escherichia coli/genética , Deleção de Genes , Regulação Bacteriana da Expressão Gênica , Lipídeos/análise , Metiltransferases/metabolismo , Dados de Sequência Molecular , Fosfatidiletanolamina N-Metiltransferase , Fosfatidiletanolaminas/metabolismo , Regiões Promotoras Genéticas/genética , Glycine max/microbiologia , Simbiose , Transcrição Gênica
8.
J Bacteriol ; 183(4): 1300-11, 2001 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-11157943

RESUMO

Previously, we screened the symbiotic gene region of the Bradyrhizobium japonicum chromosome for new NifA-dependent genes by competitive DNA-RNA hybridization (A. Nienaber, A. Huber, M. Göttfert, H. Hennecke, and H. M. Fischer, J. Bacteriol. 182:1472-1480, 2000). Here we report more details on one of the genes identified, a hemN-like gene (now called hemN(1)) whose product exhibits significant similarity to oxygen-independent coproporphyrinogen III dehydrogenases involved in heme biosynthesis in facultatively anaerobic bacteria. In the course of these studies, we discovered that B. japonicum possesses a second hemN-like gene (hemN(2)), which was then cloned by using hemN(1) as a probe. The hemN(2) gene maps outside of the symbiotic gene region; it is located 1.5 kb upstream of nirK, the gene for a Cu-containing nitrite reductase. The two deduced HemN proteins are similar in size (445 and 450 amino acids for HemN(1) and HemN(2), respectively) and share 53% identical (68% similar) amino acids. Expression of both hemN genes was monitored with the help of chromosomally integrated translational lacZ fusions. No significant expression of either gene was detected in aerobically grown cells, whereas both genes were strongly induced (> or = 20-fold) under microaerobic or anaerobic conditions. Induction was in both cases dependent on the transcriptional activator protein FixK(2). In addition, maximal anaerobic hemN(1) expression was partially dependent on NifA, which explains why this gene had been identified by the competitive DNA-RNA hybridization approach. Strains were constructed carrying null mutations either in individual hemN genes or simultaneously in both genes. All mutants showed normal growth in rich medium under aerobic conditions. Unlike the hemN(1) mutant, strains lacking a functional hemN(2) gene were unable to grow anaerobically under nitrate-respiring conditions and largely failed to fix nitrogen in symbiosis with the soybean host plant. Moreover, these mutants lacked several c-type cytochromes which are normally detectable by heme staining of proteins from anaerobically grown wild-type cells. Taken together, our results revealed that B. japonicum hemN(2), but not hemN(1), encodes a protein that is functional under the conditions tested, and this conclusion was further corroborated by the successful complementation of a Salmonella enterica serovar Typhimurium hemF hemN mutant with hemN(2) only.


Assuntos
Proteínas de Bactérias/genética , Bradyrhizobium/genética , Coproporfirinogênio Oxidase , Heme/biossíntese , Simbiose/genética , Sequência de Aminoácidos , Anaerobiose , Proteínas de Bactérias/biossíntese , Bradyrhizobium/crescimento & desenvolvimento , Mapeamento Cromossômico , Clonagem Molecular , Genes Bacterianos , Teste de Complementação Genética , Hemeproteínas/análise , Dados de Sequência Molecular , Mutação , RNA Bacteriano/genética , RNA Mensageiro/genética , Proteínas Recombinantes de Fusão/biossíntese , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos
9.
Nucleic Acids Res ; 28(21): 4166-71, 2000 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-11058113

RESUMO

RegR is the response regulator of the RegSR two-component regulatory system in Bradyrhizobium japonicum. The only target known so far is the fixR-nifA operon, encoding the redox-responsive transcription factor NifA, which activates many genes required for symbiotic nitrogen fixation in soybean nodules. In previous in vivo studies, we identified a 32 bp upstream activating sequence located around position -68, which is essential for RegR-dependent expression of the fixR-nifA operon. Here, we used an in vitro binding-site selection assay (SELEX) to more precisely define the DNA-binding specificity of RegR. The selected sequences comprised an imperfect inverted repeat (GCGGC-N(5)-GTCGC) which is highly similar to an imperfect inverted repeat in the fixR UAS (GCGAC-N(5)-GACGC). In a parallel approach, band-shift experiments were performed with oligonucleotides comprising defined point or deletion mutations in the fixR UAS. This led to the identification of 11 critical nucleotides within a 17 bp minimal RegR binding site centered at position -64 upstream of the fixR-nifA transcription start site. Notably, all 11 critical nucleotides were located either within the half sites of the inverted repeat (four nucleotides in each half site) or in the 5 bp spacer that separates the half sites (three nucleotides). Based on these results, we defined a DNA motif comprising those nucleotides that are critical for RegR binding (RegR box; 5'-GNG(A)(G)C(A)(G)TTNNGNCGC-3'). A comparison of the RegR box with functional binding sites of the RegR-like regulator RegA of Rhodobacter capsulatus revealed considerable similarities. Thus, the RegR box may assist in the identification of new RegR target genes not only in B.japonicum but also in other alpha-proteobacteria possessing RegR-like response regulators.


Assuntos
Proteínas de Bactérias/metabolismo , Bradyrhizobium/genética , DNA/metabolismo , Oxirredutases , Sequências Repetitivas de Ácido Nucleico/genética , Elementos de Resposta/genética , Fatores de Transcrição/metabolismo , Proteínas de Bactérias/genética , Sequência de Bases , Sítios de Ligação , DNA/genética , Mutação/genética , Oligodesoxirribonucleotídeos/genética , Oligodesoxirribonucleotídeos/metabolismo , Ligação Proteica , Especificidade por Substrato
10.
J Bacteriol ; 182(6): 1472-80, 2000 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-10692350

RESUMO

The so-called symbiotic region of the Bradyrhizobium japonicum chromosome (C. Kündig, H. Hennecke, and M. Göttfert, J. Bacteriol. 175:613-622, 1993) was screened for the presence of genes controlled by the nitrogen fixation regulatory protein NifA. Southern blots of restriction enzyme-digested cosmids that represent an ordered, overlapping library of the symbiotic region were competitively hybridized with in vitro-labeled RNA from anaerobically grown wild-type cells and an excess of RNA isolated either from anaerobically grown nifA and rpoN mutant cells or from aerobically grown wild-type cells. In addition to the previously characterized nif and fix gene clusters, we identified three new NifA-regulated genes that were named nrgA, nrgB, and nrgC (nrg stands for NifA-regulated gene). The latter two probably form an operon, nrgBC. The proteins encoded by nrgC and nrgA exhibited amino acid sequence similarity to bacterial hydroxylases and N-acetyltransferases, respectively. The product of nrgB showed no significant similarity to any protein with a database entry. Primer extension experiments and expression studies with translational lacZ fusions revealed the presence of a functional -24/-12-type promoter upstream of nrgA and nrgBC and proved the NifA- and RpoN (sigma(54))-dependent transcription of the respective genes. Null mutations introduced into nrgA and nrgBC resulted in mutant strains that exhibited wild-type-like symbiotic properties, including nitrogen fixation, when tested on soybean, cowpea, or mung bean host plants. Thus, the discovery of nrgA and nrgBC further emphasizes the previously suggested role of NifA as an activator of anaerobically induced genes other than the classical nitrogen fixation genes.


Assuntos
Proteínas de Bactérias/genética , Bradyrhizobium/genética , Regulação Bacteriana da Expressão Gênica , Proteínas de Membrana/genética , Simbiose/genética , Fatores de Transcrição/genética , Sequência de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Sequência de Bases , Bradyrhizobium/metabolismo , DNA Bacteriano/genética , Fabaceae/microbiologia , Proteínas de Membrana/química , Proteínas de Membrana/metabolismo , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Fases de Leitura Aberta/genética , Mapeamento Físico do Cromossomo , Plantas Medicinais , RNA Bacteriano/genética , Análise de Sequência de DNA , Fatores de Transcrição/metabolismo , Transcrição Gênica
11.
Arch Microbiol ; 174(5): 307-13, 2000 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-11131020

RESUMO

The symbiotic bacteria Bradyrhizobium japonicum and Sinorhizobium meliloti, and the purple photosynthetic bacteria Rhodobacter capsulatus, Rhodovulum sulfidophilum, Roseobacter denitrificans and Rhodobacter sphaeroides possess homologous two-component regulatory systems, namely RegSR, ActSR, RegBA and PrrBA. The respective response regulators of these bacteria control expression of different regulons that are involved in N2 fixation, CO2 fixation, photosynthesis or acid tolerance. We therefore asked whether the regulators are functionally exchangeable or whether they have disparate functions in the different species, despite the amino acid sequence similarity. In this study, we showed that purified B. japonicum RegR bound in vitro to genuine DNA targets for Rba. capsulatus RegA, and that RegA was phosphorylated in vitro when RegSc (a soluble variant of the sensor kinase RegS) was added to an Escherichia coli extract containing overexpressed RegA. In vivo, RegA and S. meliloti ActR activated transcription of the B. japonicum fixR-nifA operon, normally a target for RegR. The genes for both regulators, regA and actR, were able to complement a B. japonicum regR mutant with respect to the formation of a nitrogen-fixing symbiosis with soybean. Vice versa, RegR activated in Rba. capsulatus the expression of the photosynthesis operon puc, normally a target for RegA. In conclusion, the results show that B. japonicum RegR, Rba. capsulatus RegA, and S. meliloti ActR are functionally similar.


Assuntos
Alphaproteobacteria/genética , Alphaproteobacteria/fisiologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Regulação Bacteriana da Expressão Gênica/genética , Transdução de Sinais/genética , Dióxido de Carbono/metabolismo , Concentração de Íons de Hidrogênio , Fixação de Nitrogênio/genética , Fixação de Nitrogênio/fisiologia , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Simbiose , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo
12.
J Bacteriol ; 182(1): 14-22, 2000 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-10613857

RESUMO

A large number of bacteria regulate chaperone gene expression by the CIRCE-HrcA system in which a DNA element called CIRCE serves as binding site for the repressor protein HrcA under non-heat-shock conditions. We have cloned the two consecutive genes hrcA and grpE of Bradyrhizobium japonicum by using a complementation approach that screened for GrpE function. In vivo and in vitro transcript mapping demonstrated that both genes are transcribed separately from RpoH (sigma(32))-dependent promoters. To investigate the supposed negative regulatory function of HrcA, we compared the expression of putative target genes in the wild type with that in an hrcA mutant. Transcription of the CIRCE-associated chaperonin operons groESL(4) and groESL(5), as well as the beta-galactosidase activity derived from corresponding groE-lacZ fusions, was strongly elevated in the hrcA mutant even at physiological temperatures. Expression of other heat shock regulons (RpoH or ROSE dependent) was not affected. To study the activity of HrcA in vitro, we purified a histidine-tagged version of the protein under nondenaturing conditions. Specific binding to the CIRCE element was obtained with a soluble fraction of HrcA in gel retardation experiments.


Assuntos
Proteínas de Bactérias/genética , Bradyrhizobium/fisiologia , Resposta ao Choque Térmico/fisiologia , Sequências Reguladoras de Ácido Nucleico , Proteínas Repressoras/genética , Fator sigma , Proteínas de Bactérias/metabolismo , Chaperonina 10/genética , Clonagem Molecular , Proteínas de Ligação a DNA , Deleção de Genes , Regulação Bacteriana da Expressão Gênica , Proteínas de Choque Térmico/genética , Proteínas de Choque Térmico/metabolismo , Dados de Sequência Molecular , Fenótipo , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Proteínas Repressoras/isolamento & purificação , Proteínas Repressoras/metabolismo , Análise de Sequência de DNA , Simbiose/genética , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo , Transcrição Gênica
13.
Electrophoresis ; 20(18): 3514-20, 1999 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-10612277

RESUMO

The advent of whole genome sequences has brought with it a vast number of new potential proteins whose function is unknown. We describe an approach to sorting proteins into functional groups by comparative two-dimensional (2-D) gel mapping of cells grown under different physiological conditions. Computerized image analysis selects the proteins whose expression levels change significantly for subsequent identification by mass spectrometry. The protein groupings are further subdivided by directed alteration of their expression levels (e.g., by gene inactivation) and following the changes in the expression pattern of the mutants. We have applied this approach to study the regulation of micro- and anaerobically induced genes including the genes involved in nitrogen fixation in the symbiotic bacterium Bradyrhizobium japonicum. The results obtained show that in addition to the two known regulons controlled by the transcription factors NifA and FixK2, a third set of proteins may exist in B. japonicum which are induced by anaerobic conditions and are regulated independently. The approach can be applied generally and can be used to build up functional relationship maps of genomes. Protein identification by mass spectrometry was shown to be vital to the interpretation of the expression analysis since 15% of the 2-D gel spots contained more than one protein.


Assuntos
Proteínas de Bactérias/química , Bradyrhizobium/química , Expressão Gênica , Proteoma , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Eletroforese em Gel Bidimensional , Dados de Sequência Molecular , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
14.
Eur J Biochem ; 263(2): 455-63, 1999 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-10406954

RESUMO

Under low oxygen conditions, induction of many genes required for nitrogen fixation in Bradyrhizobium japonicum depends on the redox-responsive transcriptional activator NifA which is encoded in the fixR-nifA operon. Basal expression of this operon depends on the response regulator RegR and a DNA element located around position -68 in the fixR-nifA promoter region. To investigate the functional properties of RegR and the interaction with its putative cognate kinase, RegS, we overproduced and affinity-purified RegR and a truncated soluble variant of RegS (RegS(C)), both as N-terminally His(6)-tagged proteins. RegS(C) autophosphorylated when incubated with [gamma-(32)P]ATP, and it catalyzed the transfer of the phosphoryl label to RegR. The phosphorylated form of RegS(C) exhibited phosphatase activity on RegR-phosphate. Chemical stability tests and site-specific mutagenesis identified amino acids H219 and D63 of RegS and RegR, respectively, as the phosphorylated residues. Competition experiments with isolated domains demonstrated that the N-terminal but not the C-terminal domain of RegR interacts with RegS(C). Band-shift experiments revealed that phosphorylated RegR had at least eightfold enhanced DNA-binding activity compared with dephosphorylated RegR or the mutant protein RegR-D63N, which cannot be phosphorylated. In conclusion, the RegSR proteins of B. japonicum exhibit functional properties in vitro that are typical of two-component regulatory systems.


Assuntos
Proteínas de Bactérias , Bradyrhizobium/química , Proteínas de Ligação a DNA/química , Proteínas de Ligação a DNA/metabolismo , Fosfoproteínas/metabolismo , Fatores de Transcrição/metabolismo , Relação Dose-Resposta a Droga , Escherichia coli/química , Modelos Biológicos , Mutagênese , Fosforilação , Proteínas Recombinantes/química , Fatores de Tempo
15.
J Bacteriol ; 180(19): 5251-5, 1998 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-9748464

RESUMO

Bradyrhizobium japonicum possesses a second fixK-like gene, fixK2, in addition to the previously identified fixK1 gene. The expression of both genes depends in a hierarchical fashion on the low-oxygen-responsive two-component regulatory system FixLJ, whereby FixJ first activates fixK2, whose product then activates fixK1. While the target genes for control by FixK1 are unknown, there is evidence for activation of the fixNOQP, fixGHIS, and rpoN1 genes and some heme biosynthesis and nitrate respiration genes by FixK2. FixK2 also regulates its own structural gene, directly or indirectly, in a negative way.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Bactérias/fisiologia , Regulação Bacteriana da Expressão Gênica/fisiologia , Rhizobiaceae/genética , Sequência de Aminoácidos , Sequência de Bases , Genes Bacterianos/genética , Hemeproteínas/fisiologia , Histidina Quinase , Modelos Genéticos , Dados de Sequência Molecular , Mutação , Óperon/genética , Oxigênio , Proteínas Recombinantes de Fusão , Mapeamento por Restrição , Rhizobiaceae/metabolismo , Homologia de Sequência de Aminoácidos , Transcrição Gênica/genética , Ativação Transcricional/genética
16.
J Bacteriol ; 180(15): 3853-63, 1998 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-9683482

RESUMO

Many nitrogen fixation-associated genes in the soybean symbiont Bradyrhizobium japonicum are regulated by the transcriptional activator NifA, whose activity is inhibited by aerobiosis. NifA is encoded in the fixR-nifA operon, which is expressed at a low level under aerobic conditions and induced approximately fivefold under low-oxygen tension. This induction depends on a -24/-12-type promoter (fixRp1) that is recognized by the sigma54 RNA polymerase and activated by NifA. Low-level aerobic expression and part of the anaerobic expression originates from a second promoter (fixRp2) that overlaps with fixRp1 and depends on an upstream DNA region (UAS) located around position -68 (H. Barrios, H. M. Fischer, H. Hennecke, and E. Morett, J. Bacteriol. 177:1760-1765, 1995). A protein binding to the UAS was previously postulated to act as an activator. This protein has now been purified, and the corresponding gene (regR) has been cloned. On the basis of the predicted amino acid sequence, RegR belongs to the family of response regulators of two-component regulatory systems. We identified upstream of the regR gene an additional gene (regS) encoding a putative sensor kinase. A regR mutant was constructed in which neither a specific UAS-binding activity nor fixRp2-dependent transcript formation and fixR'-'lacZ expression was detected in aerobically grown cells. Anaerobic fixR'-'lacZ expression was also decreased in regR mutants to about 10% of the level observed in the wild type. Similarly, regR mutants showed only about 2% residual nitrogen fixation activity, but unlike nodules induced by nifA mutants, the morphology of those nodules was normal, displaying no signs of necrosis. While regR mutants grew only slightly slower in free-living, aerobic conditions, they displayed a strong growth defect under anaerobic conditions. The phenotypic properties of regS mutants differed only marginally, if at all, from those of the wild type, suggesting the existence of a compensating sensor activity in these strains. The newly identified RegR protein may be regarded as a master regulator in the NifA-dependent network controlling nif and fix gene expression in B. japonicum.


Assuntos
Proteínas de Bactérias/biossíntese , Regulação Bacteriana da Expressão Gênica , Óperon , Oxirredutases , Proteínas Pol1 do Complexo de Iniciação de Transcrição , Regiões Promotoras Genéticas , Rhizobiaceae/genética , Rhizobiaceae/metabolismo , Fatores de Transcrição/biossíntese , Fatores de Transcrição/metabolismo , Aerobiose , Sequência de Aminoácidos , Anaerobiose , Proteínas de Bactérias/metabolismo , Sequência de Bases , Clonagem Molecular , Sequência Consenso , Proteínas de Ligação a DNA/biossíntese , Proteínas de Ligação a DNA/isolamento & purificação , Genes Bacterianos , Genes Reguladores , Cinética , Dados de Sequência Molecular , Fixação de Nitrogênio/genética , Proteínas Recombinantes de Fusão/biossíntese , Rhizobiaceae/crescimento & desenvolvimento , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Glycine max/fisiologia , Simbiose , Fatores de Transcrição/química , Fatores de Transcrição/isolamento & purificação , Transcrição Gênica
17.
FEMS Microbiol Lett ; 161(1): 47-52, 1998 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-9561731

RESUMO

We identified by cloning and DNA sequence analysis the phosphate regulatory gene phoB of Bradyrhizobium japonicum. The deduced gene product displayed pronounced similarity to the PhoB protein of Sinorhizobium meliloti (71.4% identical amino acids). Escherichia coli (50.2%) and other bacterial species. Insertion of a kanamycin resistance cassette into phoB led to impaired growth of the B. japonicum mutant in media containing approximately 25 microM phosphate or less. A standard plant infection test using wild-type and phoB-defective B. japonicum strains showed that the phoB mutation had no effect on the symbiotic properties of B. japonicum with its soybean host plant.


Assuntos
Proteínas de Bactérias/genética , Genes Bacterianos , Fixação de Nitrogênio , Fosfatos/metabolismo , Rhizobium/genética , Sequência de Aminoácidos , Dados de Sequência Molecular , Mutação , Rhizobium/fisiologia
18.
Arch Microbiol ; 169(2): 89-97, 1998 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-9446679

RESUMO

A degP (htrA)-like gene of Bradyrhizobium japonicum was identified immediately downstream of two genes (hspB and hspC) coding for small heat-shock proteins. All three genes are oriented in the same direction and are separated by only 85 and 72 bp, and a heat-inducible transcript covering hspB, hspC, and degP was detected by RT-PCR. These results show that the genes are organized in an operon. Two mutants, a degP insertion mutant and a DeltahspBCdegP mutant, were constructed by marker replacement mutagenesis. Immunoblot analysis performed with a serum raised against the amino-terminal end of IbpA, an HspB homolog of Escherichia coli, identified three heat-inducible protein bands in B. japonicum extract, one of which was missing in the deletion mutant. None of the mutants showed an obvious defect during growth at different temperatures, after heat-shock treatment, or in the presence of solvents. Moreover, they were not affected in root-nodule symbiosis, indicating that the small heat-shock proteins HspB and HspC and the DegP homolog of B. japonicum are not required under a wide range of growth conditions.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Choque Térmico/genética , Óperon , Proteínas Periplásmicas , Rhizobium/genética , Serina Endopeptidases/genética , Sequência de Aminoácidos , Clonagem Molecular , Dados de Sequência Molecular , Mutação , Fixação de Nitrogênio , Transcrição Gênica
19.
Mol Microbiol ; 24(1): 93-104, 1997 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-9140968

RESUMO

Bradyrhizobium japonicum possesses a subclass of heat-shock genes whose members are transcribed from a sigma 32 consensus promoter. Having identified previously one gene (rpoH1) encoding a sigma 32-like RNA polymerase transcription factor, we report here the characterization of two additional rpoH-like genes (rpoH2 and rpoH3). B. japonicum thus represents the first example of an organism possessing an rpoH multigene family. All three rpoH genes encode functional proteins that are able to initiate transcription from the Escherichia coli groE promoter. Each rpoH gene is apparently regulated by a different mechanism. Although both rpoH1 and rpoH2 are transcribed from sigma 70-type promoters, transcription of the rpoH1 operon was found to be heat inducible by an unknown mechanism, whereas the level of rpoH2 mRNA decreased after heat shock. At extreme temperatures (48 degrees C), rpoH2 was transcribed from a second promoter that resembled the E. coli sigma E-type promoter. The rpoH3 gene was found to be associated with two upstream genes, ragA and ragB, coding for a classical two-component regulatory system. Transcription initiated from a promoter that mapped in front of the putative response regulator gene ragA, suggesting that ragA, ragB and rpoH3 are organized in an operon. The ragA promoter was similar to a sigma 32 consensus promoter. The three B. japonicum rpoH genes also varied in their significance to support growth of the organism. While the rpoH2 gene could not be eliminated by mutation, knock-out mutants of rpoH1 and/ or rpoH3 were readily obtained and shown to be indistinguishable from the wild type under aerobic growth conditions or during root-nodule symbiosis. We conclude that rpoH2 is essential for the synthesis of cellular proteins under physiological growth conditions, whereas rpoH1, and probably also rpoH3, are involved in their synthesis during the stress response.


Assuntos
Proteínas de Bactérias/genética , Genes Bacterianos , Proteínas de Choque Térmico/genética , Rhizobiaceae/genética , Fator sigma/genética , Fatores de Transcrição/genética , Sequência de Aminoácidos , Proteínas de Bactérias/metabolismo , Sequência de Bases , Proteínas de Choque Térmico/metabolismo , Dados de Sequência Molecular , Mutação , Filogenia , Rhizobiaceae/classificação , Rhizobiaceae/metabolismo , Homologia de Sequência de Aminoácidos , Fator sigma/metabolismo , Fatores de Transcrição/metabolismo
20.
Mol Gen Genet ; 254(2): 195-206, 1997 Mar 26.
Artigo em Inglês | MEDLINE | ID: mdl-9108282

RESUMO

The dnaKJ genes of Bradyrhizobium japonicum were cloned and sequenced. They map adjacent to each other, as in other proteobacteria of the alpha and gamma subgroups. Primer extension experiments identified two strongly heat-inducible transcripts starting 99 bp (T1) and 204 bp (T2) upstream of dnaK. Synthesis of the shorter transcript T1 in Escherichia coli required the presence of a recently characterized sigma32 homologue (RpoH1) from B. japonicum. The -35 and -10 regions of the promoters associated with the transcription start sites T1 and T2 displayed nucleotide sequence motifs that are characteristic for sigma32-dependent promoters in E. coli and alpha-proteobacteria. Heat shock regulation of dnaK expression was confirmed by immunoblot analysis of DnaK protein. All of these results put dnaK into the sigma32-dependent class, not the CIRCE-dependent class, of heat shock genes in B. japonicum. At normal growth temperature dnaK was expressed at a significant basal level. All attempts to eliminate dnaK function by insertion or deletion mutagenesis failed. By contrast, dnaJ null mutants and insertions in the dnaKJ intergenic region were easily obtained. The growth rate of dnaJ mutants was reduced but the final cell density reached in rich medium and their symbiotic properties were indistinguishable from the wild type.


Assuntos
Proteínas de Escherichia coli , Genes Bacterianos , Proteínas de Choque Térmico HSP70/genética , Proteínas de Choque Térmico/genética , Óperon , Rhizobiaceae/genética , Fatores de Transcrição , Sequência de Aminoácidos , Proteínas de Bactérias/genética , Sequência de Bases , Clonagem Molecular , Análise Mutacional de DNA , Primers do DNA/genética , DNA Bacteriano/genética , Teste de Complementação Genética , Proteínas de Choque Térmico HSP40 , Proteínas de Choque Térmico HSP70/biossíntese , Temperatura Alta , Dados de Sequência Molecular , Regiões Promotoras Genéticas , Rhizobiaceae/metabolismo , Fator sigma/genética
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