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1.
J Chem Theory Comput ; 19(19): 6770-6781, 2023 Oct 10.
Artigo em Inglês | MEDLINE | ID: mdl-37729470

RESUMO

Density functional theory (DFT) is a significant computational tool that has substantially influenced chemistry, physics, and materials science. DFT necessitates parametrized approximation for determining an expected value. Hence, to predict the properties of a given molecule using DFT, appropriate parameters of the functional should be set for each molecule. Herein, we optimize the parameters of range-separated functionals (LC-BLYP and CAM-B3LYP) via Bayesian optimization (BO) to satisfy Koopmans' theorem. Our results demonstrate the effectiveness of the BO in optimizing functional parameters. Particularly, Koopmans' theorem-compliant LC-BLYP (KTLC-BLYP) shows results comparable to the experimental UV-absorption values. Furthermore, we prepared an optimized parameter dataset of KTLC-BLYP for over 3000 molecules through BO for satisfying Koopmans' theorem. We have developed a machine learning model on this dataset to predict the parameters of the LC-BLYP functional for a given molecule. The prediction model automatically predicts the appropriate parameters for a given molecule and calculates the corresponding values. The approach in this paper would be useful to develop new functionals and to update the previously developed functionals.

2.
Sci Technol Adv Mater ; 23(1): 352-360, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35693890

RESUMO

Recently, artificial intelligence (AI)-enabled de novo molecular generators (DNMGs) have automated molecular design based on data-driven or simulation-based property estimates. In some domains like the game of Go where AI surpassed human intelligence, humans are trying to learn from AI about the best strategy of the game. To understand DNMG's strategy of molecule optimization, we propose an algorithm called characteristic functional group monitoring (CFGM). Given a time series of generated molecules, CFGM monitors statistically enriched functional groups in comparison to the training data. In the task of absorption wavelength maximization of pure organic molecules (consisting of H, C, N, and O), we successfully identified a strategic change from diketone and aniline derivatives to quinone derivatives. In addition, CFGM led us to a hypothesis that 1,2-quinone is an unconventional chromophore, which was verified with chemical synthesis. This study shows the possibility that human experts can learn from DNMGs to expand their ability to discover functional molecules.

3.
Materials (Basel) ; 16(1)2022 Dec 27.
Artigo em Inglês | MEDLINE | ID: mdl-36614607

RESUMO

In recent years, there has been considerable research into functional materials inspired by living things. Much attention has been paid to the development of adhesive materials that mimic the adhesive proteins secreted by a mussel's foot. These mussel-inspired materials have superior adhesiveness to various adherents owing to the non-covalent interactions of their polyphenolic moieties, e.g., hydrogen bonding, electrostatic interactions, and even hydrophobic interactions. Various factors significantly affect the adhesiveness of mussel-inspired polymers, such as the molecular weight, cross-linking density, and composition ratio of the components, as well as the chemical structure of the polyphenolic adhesive moieties, such as l-3,4-dihydroxyphenylalanine (l-Dopa). However, the contributions of the position and distribution of the adhesive moiety in mussel-inspired polymers are often underestimated. In the present study, we prepared a series of mussel-inspired alkyl methacrylate copolymers by controlling the position and distribution of the adhesive moiety, which are known as "forced gradient copolymers". We used a newly designed gallic-acid-bearing methacrylate (GMA) as the polyphenolic adhesive moiety and copolymerized it with 2-ethylhexyl methacrylate (EHMA). The resulting forced gradient adhesive copolymer of GMA and EHMA (poly(GMA-co-EHMA), Poly1) was subjected to adhesion and dispersion tests with an aluminum substrate and a BaTiO3 nanoparticle in organic solvents, respectively. In particular, this study aims to clarify how the monomer position and distribution of the adhesive moiety in the mussel-inspired polymer affect its adhesion and dispersion behavior on a flat metal oxide surface and spherical inorganic oxide surfaces of several tens of nanometers in diameter, respectively. Here, forced gradient copolymer Poly1 consisted of a homopolymer moiety of EHMA (Poly3) and a random copolymer moiety of EHMA and GMA (Poly4). The composition ratio of GMA and the molecular weight were kept constant among the Poly1 series. Simultaneous control of the molecular lengths of Poly3 and Poly4 allowed us to discuss the effects on the distribution of GMA in Poly1. Poly1 exhibited apparent distribution dependency with regard to the adhesiveness and the dispersibility of BaTiO3. Poly1 showed the highest adhesion strength when the composition ratio of GMA was approximately 9 mol% in the portion of the Poly4 segment. In contrast, the block copolymer consisting of the Poly3 segment and Poly4 segment with only adhesive moiety 1 showed the lowest viscosity for dispersion of BaTiO3 nanoparticles. These results indicate that copolymers with mussel-inspired adhesive motifs require the proper design of the monomer position and distribution in Poly1 according to the shape and characteristics of the adherend to maximize their functionality. This research will facilitate the rational design of bio-inspired adhesive materials derived from plants that outperform natural materials, and it will eventually contribute to a sustainable circular economy.

4.
Sci Technol Adv Mater ; 22(1): 532-542, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34345222

RESUMO

Recycling of epoxy resin and its composites is extremely difficult due to its thermoset nature. In this study, we proposed the environmentally-friendly recycling system of epoxy resin with dynamic covalent bonding in the assistance of cysteine-containing tripeptide, so-called glutathione. The glutathione attached on the epoxy resin and resulted in the cleavage of dynamic disulfide bonds of epoxy resin through thiol-disulfide exchange reaction between the thiol group of glutathione and disulfide bonding of epoxy resin, followed by the scission of epoxy networks. Therefore, the degraded epoxy residue was dissolved into chloroform. Finally, this resulting product could be reused as reagent for preparation the new epoxy materials with approximately 90% of initial mechanical strength via regeneration of disulfide bonding through heating. This work demonstrated the different aspect to understand the decomposition and recycling of thermosetting networks and the wide application under more environmentally friendly condition.

5.
J Phys Chem B ; 122(29): 7233-7242, 2018 07 26.
Artigo em Inglês | MEDLINE | ID: mdl-29956543

RESUMO

We have evaluated the strength of intramolecular hydrogen bond in a protein based on molecular dynamics and quantum chemical calculation. To estimate the intramolecular hydrogen bond strength in okadaic acid (OA), we analyzed the influence of solvent and protonation states on the hydrogen bond and the entire structure. We performed molecular dynamics calculation and analyzed the strength of the hydrogen bond by measuring bond length and bond angle. The stable structure differs depending on the kind of solvent used and the protonation state of OA. Using the mean interaction energy from the quantum chemical calculation, hydrogen bond length and angle were investigated against bond energy. Although dielectric constant slightly depends on bond energy, the estimation of the intramolecular hydrogen bond strength in OA is possible even in a protein environment. The Coulomb interaction between OA and surrounding arginine produced a more negatively charged O1 in OA. The hydrogen bond energy in the deprotonated state is larger than that in the protonated state.


Assuntos
Simulação de Dinâmica Molecular , Ácido Okadáico/química , Teoria Quântica , Ligação de Hidrogênio , Termodinâmica , Água/química
6.
Chemistry ; 21(51): 18547-50, 2015 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-26500040

RESUMO

Lewis acid (MgBr2)-catalyzed radical polymerization of acrylimides bearing chiral oxazolidinones gave highly isotactic polyacrylimides with up to >99% meso tetrad (mmm) selectivity. Polymerization in the absence of Lewis acid gave atactic polymers with 80% racemo diad (r) selectivity; the selectivity was deliberately tuned from 80% r to >99% mmm by varying the polymerization conditions. The polyacrylimide was quantitatively converted to corresponding polyacrylates while preserving the stereoregularity, thus providing a general method for the synthesis of atactic to isotactic polyacrylates.

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