Outbreak of Pseudomonas aeruginosa High-Risk Clone ST309 Serotype O11 Featuring blaPER-1 and qnrVC6.

Pseudomonas aeruginosa is a leading cause of hospital-acquired infections worldwide. Biofilm production, antibiotic resistance, and a wide range of virulence factors contribute to their persistence in nosocomial environments. We describe an outbreak caused by a multidrug-resistant P. aeruginosa strain in an ICU. Antibiotic susceptibility was determined and blaPER-1 and qnrVC were amplified via PCR. Clonality was determined using PFGE and biofilm formation was studied with a static model. A combination of antibiotics was assessed on both planktonic cells and biofilms. WGS was performed on five isolates. All isolates were clonally related, resistant to ceftazidime, cefepime, amikacin, and ceftolozane-tazobactam, and harbored blaPER-1; 11/19 possessed qnrVC. Meropenem and ciprofloxacin reduced the biofilm biomass; however, the response to antibiotic combinations with rifampicin was different between planktonic cells and biofilms. WGS revealed that the isolates belonged to ST309 and serotype O11. blaPER-1 and qnrVC6 were associated with a tandem of ISCR1 as part of a complex class one integron, with aac(6')-Il and ltrA as gene cassettes. The structure was associated upstream and downstream with Tn4662 and flanked by direct repeats, suggesting its horizontal mobilization capability as a composite transposon. ST309 is considered an emerging high-risk clone that should be monitored in the Americas.

Infecciones urinarias nosocomiales en un hospital universitario: prevalencia, factores predisponentes y agentes etiológicos en salas de cuidados moderados

Resumen: Introducción: Las infecciones nosocomiales constituyen uno de los principales problemas sanitarios a nivel mundial. Una de las más frecuentes es la infección del tracto urinario, cuya frecuencia reportada en Uruguay fue de 9,8% en unidades de Cuidados Intensivos al año 2013. El objetivo fue determinar la prevalencia de infecciones urinarias nosocomiales en salas de cuidados moderados de un hospital universitario, conocer los factores de riesgo asociados a las mismas y el perfil microbiológico de los microorganismos causales. Metodología: Estudio de corte transversal, en salas de cuidados moderados de un hospital terciario y universitario de Montevideo, desde el 1 de agosto de 2017 hasta el 31 de julio de 2018. Se incluyeron pacientes que cumplieron criterios diagnósticos de infección urinaria nosocomial, con urocultivo compatible obtenido luego de 3 días del ingreso. Se completó la recolección de variables mediante entrevista con el paciente y revisión de historia clínica. Resultados: La prevalencia de infección urinaria nosocomial fue de 1,08% en el período de estudio. La mediana de edad fue 62,5 años y 52,3% eran de sexo masculino. La mediana de internación fue de 15 días, la mayoría en salas de Medicina Interna. El 93,2% presentó al menos un factor de riesgo, destacando la exposición a catéter urinario en el 68,3%. El 52,3% de los casos presentó infección urinaria asociada a catéter. El total de los aislamientos microbiológicos fue bacteriano, 84% de bacterias Gram negativas. Klebsiella pneumoniae fue el más prevalente (39,2%), seguido de Escherichia coli (34,2%). Las bacterias Gram positivas correspondieron en su totalidad a Enterococcus spp. Las bacterias Gram negativas mostraron tasas de resistencia mayores al 20% para múltiples antibióticos de varias categorías y 42,1% presentó betalactamasa de espectro extendido. Conclusiones: Las infecciones urinarias nosocomiales en cuidados moderados se presentaron en pacientes con internación prolongada y múltiples comorbilidades. Destaca la exposición a catéter urinario, con un elevado porcentaje de infecciones asociadas al mismo. Los microorganismos causales fueron altamente resistentes a múltiples antibióticos.

Abstract: Introduction: Nosocomial infections are one of the main health problems worldwide. One of the most frequent is urinary tract infection, whose frequency reported in Uruguay was 9.8% in Intensive Care Units in 2013. The objective was to determine the prevalence of nosocomial urinary tract infections in moderate care wards of a universitary hospital, know the risk factors associated with them and the microbiological profile of the causal microorganisms. Methodology: Cross-sectional study, in moderate care wards of a tertiary and universitary hospital in Montevideo, from August 1, 2017 to July 31, 2018. Patients who met diagnostic criteria for nosocomial urinary tract infection were included, with compatible urine culture obtained after 3 days of admission. Variables collection was made through an interview with the patient and a review of the clinical history. Results: The prevalence of nosocomial urinary tract infection was 1.08% during the study period. The median age was 62.5 years and 52.3% were male. The median hospital stay was 15 days, most of them in Internal Medicine wards. 93.2% presented at least one risk factor, highlighting exposure to urinary catheter in 68.3%. 52.3% of the cases presented catheter-associated urinary tract infection. The total of the microbiological isolates was bacterial, 84% of Gram negative bacteria. Klebsiella pneumoniae was the most prevalent (39.2%), followed by Escherichia coli (34.2%). The Gram-positive bacteria corresponded entirely to Enterococcus spp. Gram-negative bacteria showed resistance rates greater than 20% for multiple antibiotics from various categories and 42.1% had extended-spectrum beta-lactamase. Conclusions: Nosocomial urinary tract infections in moderate care occur in patients with prolonged hospitalization and multiple comorbidities. Exposure to urinary catheter stands out, with a high percentage of infections associated with it. The causative microorganisms were highly resistant to multiple antibiotics.

Resumo: Introdução: As infecções hospitalares são um dos principais problemas sanitários a nível mundial. Uma das mais frequentes é a infecção do trato urinário, cuja frequência relatada no Uruguai foi de 9,8% nas Unidades de Terapia Intensiva em 2013. O objetivo foi determinar a prevalência de infecções do trato urinário hospitalares em enfermarias de cuidados moderados de um hospital universitário, conhecer os fatores de risco associados e o perfil microbiológico dos microrganismos causadores. Metodologia: Estudo de corte transversal, em salas de cuidados moderados de um hospital terciário e universitário de Montevidéu, de 1º de agosto de 2017 a 31 de julho de 2018. Foram incluídos pacientes que preencheram os critérios diagnósticos para infecção do trato urinário hospitalar, com urocultura compatível obtida após 3 dias de admissão. A coleta de variáveis foi completada por meio de entrevista com o paciente e revisão da história clínica. Resultados: A prevalência de infecção urinária hospitalar foi de 1,08% no período estudado. A média de idade foi de 62,5 anos e 52,3% eram do sexo masculino. A média de permanência hospitalar foi de 15 dias, a maioria em enfermarias de Clínica Médica. O 93,2% apresentaram pelo menos um fator de risco, destacando-se a exposição ao cateter urinário em 68,3%. O 52,3% dos casos apresentaram infecção do trato urinário associada ao cateter. O total de isolados microbiológicos foi bacteriano, 84% de bactérias Gram-negativas. Klebsiella pneumoniae foi a mais prevalente (39,2%), seguida de Escherichia coli (34,2%). As bactérias Gram-positivas corresponderam inteiramente a Enterococcus spp . As bactérias Gram-negativas apresentaram taxas de resistência superiores a 20% para vários antibióticos de várias categorias e 42,1% apresentaram betalactamasa de espectro estendido. Conclusões: Infecções do trato urinário hospitalares em cuidados moderados ocorreram em pacientes com internação prolongada e múltiplas comorbidades. Destaca-se a exposição ao cateter urinário, com alto percentual de infecções associadas a ele. Os microrganismos causadores foram altamente resistentes a múltiplos antibióticos.

Predictores de tuberculosis pulmonar y experiencia con su diagnóstico molecular rápido / Pulmonary tuberculosis predictors and rapid molecular diagnosis / Preditores de tuberculose pulmonar e experiência com o diagnóstico molecular rápido

Resumen: A nivel mundial se estima que en 2018 hubo alrededor de 10 millones de nuevos casos de tuberculosis (TBC). La detección molecular es una herramienta diagnóstica crecientemente utilizada para el diagnóstico de TBC. Los predictores de riesgo para TBC pulmonar son variados y varían de acuerdo a la población estudiada. Los objetivos del presente trabajo fueron: evaluar la performance de la detección de M. tuberculosis por la técnica Xpert® MTB/RIF para el diagnóstico de TBC pulmonar y determinar los factores predictores de presencia de esta enfermedad en pacientes asistidos en el Hospital Pasteur de Montevideo. Se realizó un estudio descriptivo, observacional y transversal. Se incluyeron 254 pacientes, 68 con TBC pulmonar. La sensibilidad de la prueba Xpert® MTB/RIF para detectar M. tuberculosis fue 100% (IC 95%: 91,2-100) y la especificidad 95,1% (IC 95%: 83,9-98,7). En el análisis multivariado se evidenció que los predictores independientes para presencia de TBC pulmonar fueron: contacto cercano con otro caso de TBC (p<0,001), consumo de pasta base de cocaína (p=0,006) y presentarse con adelgazamiento (p<0,001). En suma, la prueba Xpert® MTB/RIF se comportó como una excelente herramienta diagnóstica en nuestra población con elevada prevalencia de TBC pulmonar. Los predictores independientes para esta enfermedad indican que en la población analizada las estrategias de control de esta enfermedad requieren un abordaje multidisciplinario.

Summary: According to global estimations, there were approximately 10 million new cases of tuberculosis in 2018. Molecular diagnosis constitutes a rapidly growing diagnostic tool for tuberculosis. Risk predictors for pulmonary tuberculosis are varied and they depend on the population studied. The study aimed to assess the performance of M. tuberculosis detection by use of Xpert® MTB/RIF diagnostic test to diagnose pulmonary tuberculosis and to identify predictive factors for this disease in patients assisted at Pasteur Hospital in Montevideo. A descriptive, observational and transversal study was conducted, which included 254 patients, 68 of which had pulmonary tuberculosis. Sensitivity of the Xpert MTB/RIF assay to detect M. tuberculosis was 100% (CI 95%: 91.2-100) and specificity 95.1% (CI 95%: 83.9-98.7). Multivariate analysis evidenced the following to be the independent predictors that detect pulmonary tuberculosis: close contact with other cases of tuberculosis (p<0.001), coca-paste consumption (p=0.006) and evidence of loss of weight (p<0,001). To sum up, the Xpert® MTB/RIF assay proved to be an excellent diagnostic tool in our population with a high prevalence of pulmonary tuberculosis. Independent predictors for this disease show that, in the population studied, control strategies require a multidisciplinary approach.

Resumo: Globalmente, estima-se que em 2018 ocorreram cerca de 10 milhões de novos casos de tuberculose (TB). A detecção molecular é uma ferramenta diagnóstica cada vez mais usada para seu diagnóstico. Os preditores de risco para TB pulmonar são diversos e variam de acordo com a população estudada. Os objetivos deste estudo foram: avaliar o desempenho da detecção do M. tuberculosis pela técnica Xpert MTB/RIF para o diagnóstico da TB pulmonar e determinar os fatores preditivos da presença desta doença em pacientes atendidos no Hospital Pasteur de Montevidéu. Foi realizado um estudo descritivo, observacional e transversal. 254 pacientes foram incluídos, 68 com TB pulmonar. A sensibilidade do teste Xpert® MTB/RIF para detectar M. tuberculosis foi de 100% (IC 95%: 91,2-100) e a especificidade de 95,1% (IC 95%: 83,9- 98,7). A análise multivariada mostrou que os preditores independentes para a presença de tuberculose pulmonar foram: contato próximo com outro caso de tuberculose (p <0,001), consumo de pasta base de cocaína (p = 0,006) e apresentar perda de peso (p <0,001). Em suma, o teste Xpert® MTB/RIF se comportou como uma excelente ferramenta diagnóstica em nossa população com alta prevalência de TB pulmonar. Os preditores independentes para essa doença indicam que, na população analisada, as estratégias de controle da doença requerem uma abordagem multidisciplinar.

Polyclonal Campylobacter fetus Infections Among Unrelated Patients, Montevideo, Uruguay, 2013-2018.

In Montevideo (2013-2018), 8 Campylobacter fetus extraintestinal infections were reported. The polyclonal nature of strains revealed by whole-genome sequencing and the apparent lack of epidemiological links was incompatible with a single contamination source, supporting alternative routes of transmission.

Characteristics of Community-Associated Methicillin-Resistant Staphylococcus aureus (CA-MRSA) Strains Isolated from Skin and Soft-Tissue Infections in Uruguay.

We analyzed 90 nonduplicates community-associated methicillin-resistant S. aureus (CA-MRSA) strains isolated from skin and soft-tissue infections. All strains were mecA positive. Twenty-four of the 90 strains showed inducible macrolide-lincosamide-streptogramin B resistance. All strains produced alpha-toxin; 96% and 100% of them displayed positive results for lukS-F and cna genes, respectively. Eigthy-five strains expressed capsular polysaccharide serotype 8. Six different pulsotypes were discriminated by pulsed-field gel electrophoresis (PFGE) and three predominant groups of CA-MRSA strains (1, 2, and 4) were identified, in agreement with phenotypic and genotypic characteristics. Strains of group 1 (pulsotype A, CP8+, and Panton-Valentine leukocidin (PVL)+) were the most frequently recovered and exhibited a PFGE band pattern identical to other CA-MRSA strains previously isolated in Uruguay and Brazil. Three years after the first local CA-MRSA report, these strains are still producing skin and soft-tissue infections demonstrating the stability over time of this community-associated emerging pathogen.

Prevalence and dissemination of the Ser315Thr substitution within the KatG enzyme in isoniazid-resistant strains of Mycobacterium tuberculosis isolated in Uruguay.

The aim of this study was to determine the prevalence of Ser315Thr substitution in isoniazid (INH)-resistant strains of Mycobacterium tuberculosis in Uruguay. The katG gene of 62 INH-resistant strains was analysed by an RFLP-PCR assay. PCR products were digested with MspI to detect Ser315Thr and Arg463Leu substitutions. A total of 16 of the 62 (26 %) INH-resistant strains analysed had a Ser315Thr substitution. Only one INH-resistant strain had an Arg463Leu substitution and two strains had a deletion in katG. Of the 16 strains with Ser315Thr, 15 showed different profiles using a double-repetitive-element PCR assay, demonstrating that there was no local dissemination of any particular strain. These findings are in agreement with published data from regions where the prevalence of tuberculosis (TB) is intermediate and may be due in part to the success of the local TB control programme.

Shiga toxin 2-producing Acinetobacter haemolyticus associated with a case of bloody diarrhea.

We report the first Shiga toxin 2-producing Acinetobacter haemolyticus strain that was isolated from the feces of a 3-month-old infant with bloody diarrhea. Usual enteropathogenic bacteria were not detected. This finding suggests that any Shiga toxin-producing microorganism capable of colonizing the human gut may have the potential to cause illness.

Enteropathogenic Escherichia coli strains carrying genes encoding the PER-2 and TEM-116 extended-spectrum beta-lactamases isolated from children with diarrhea in Uruguay.

We studied 13 extended-spectrum beta-lactamase (ESBL)-producing enteropathogenic Escherichia coli isolates from children suffering acute diarrhea in Uruguay. ESBL characterization in crude extracts showed a single band at pI 5.4. PCR amplification and sequencing data allowed identification of blaPER-2 and blaTEM-116. Retrospective analysis suggests that these strains were disseminated in the community, even if unnoticed, prior to their access to the hospital environment more than a decade ago.