Landscape genomics and selection signatures of local adaptation of Eritrean indigenous cattle along environmental gradients.

Most parts of Eritrea are classified as arid and semi-arid land (ASALs) which are characterised by dryness, high ambient temperatures and low precipitation. The country has three different environmental landscapes: highland, Western lowland and Eastern lowland agro-ecological zones (AEZs). The geophysical and biophysical characteristics of the AEZs vary. Indigenous cattle which are mainly kept in extensive production system have to cope with the adverse climatic conditions of these AEZs. They have to adapt to the harsh climate, poor feed quality and endemic diseases and parasites and reproduction challenges in the AEZs. The underlying genetic basis of the indigenous cattle adaption to the specific AEZs in Eritrea is limited. In this study, it is hypothesized that the indigenous cattle have evolved and developed unique adaptive characteristics because of being reared in specific ecological landscapes. This was tested using the landscape genomics and analysis of selection signatures to ascertain the genetic basis of their adaptability to the nutritional and environmental constraints that characterise the AEZ conditions. The study was carried out in three different environmental landscapes: highland, Eastern lowland and Western lowland AEZs. Blood samples were collected from a total of 188 indigenous cattle populations sampled from the three AEZs. DNA was extracted and genotyped using the genotype by sequencing (GBS) method. Analysis revealed the existence of medium to high genetic diversity between and within the indigenous cattle populations. Scanning of selection signatures revealed genomic regions under positive selection. The regions harboured genes (IFNAR2, CASR, AHSG, ATP1B3, AIRE, ROBO2, SCHIP1 and PARS2) of importance for facial morphology, locomotion, mineral homeostasis, immune system and skeletal and muscle system development. Findings pointed out the influence of AEZ landscapes on the genetic differentiation of indigenous cattle appearances probably due to selection driven by diverse climatic and biophysical conditions. The differentiation is orientated towards adaptive characteristics.

Can black soldier fly Desmodium intortum larvae-based diets enhance the performance of Cobb500 broiler chickens and smallholder farmers' profit in Kenya?

This study aimed to evaluate the performance of broiler chickens fed on 3 black soldier fly larvae (BSFL) (Hermetia illucens) and Greenleaf desmodium (Desmodium intortum)-based meals. We evaluated growth performance, carcass quality, and profitability under various commercial pathways (doorstep, retail, whole, and assorted). Desmodium and BSFL powders were formulated into 3 ratios: T1 25:75, T2 50:50, and T3 75:25. A commercial feed was used as a control. One hundred and twenty mixed-sex 1-day-old broiler chicks (Cobb) were reared in pens for 42 d in a completely randomized design. The chickens were weighed weekly to monitor their growth rate. After the 42-day rearing period, they were slaughtered for carcass quality evaluation and recording of the weights of internal organs. During the initial growth phase (7-21 d), significant effects of fish meal replacement were found on the chickens' average weight (P < 0.001), average daily body weight gain (P < 0.001), average daily feed intake (P < 0.001), and feed conversion ratio (P < 0.001). However, during the second phase (21-42 d), no significant effect of the replacement was detected except on average daily feed intake (P = 0.003). No significant differences were found in terms of the relative weights of internal organs. It was found that Desmodium-BSFL-based feeds were more profitable than the control feed, and the assorted and retail modes of sale generated more revenue compared to when the chickens were sold at doorstep and on whole-chicken basis. The return on investment was higher for a push-pull adopter compared to a non-adopter. The study found that a BSFL-Desmodium mixture can be a valuable replacement for the protein component in conventional feed and would provide a new impetus for the adoption of push-pull.

Effect of feed supplementation of Dacryodes edulis parts' powder as prebiotic on the growth traits, ceca microbiota and blood parameters of local chickens.

This study aimed at testing the efficacy and safety of Dacryodes edulis plant parts in diets fed to chicken. The plant has potential for use as a natural prebiotic to substitute the conventionally used antibiotic growth promoters in poultry production. Phytochemical analyses of the plant leaves, stem, and bark combination (stembark) and seed powders from the D. edulis were carried out. The powder from the three D. edulis plant parts were used as supplement in formulating six experimental diets tested in this study. The diets were TL0Ed (0.5% leaves powder), TL1Ed (1.0% leaves powder), TB0Ed (0.5% stembark powder), TB1Ed (1.0% stembark powder), TS0Ed (0.5% seeds powder), and TS1Ed (1.0% seeds powder). Besides, a positive (T+ positive control; 0.5-g oxytetracycline as recommended by the manufacturer) and a negative (T- negative control; having no commercial antibiotic and no plant supplement) diets were prepared for comparison purposes. The diets were fed to a total of 288 dual-purpose chicken for a period of 14 weeks. The chicken growth and body composition characteristics, blood chemistry, and microbiota count were collected and used as indicators of the plant parts efficacy and safety. The analysis of the D. edulis plant parts significantly differed (P ≤ 0.05) in their phytochemical contents. The initial body weight and feed conversion efficiency ratios were not significantly different (P ≥ 0.05) between and among treatment groups. However, significant differences (P ≤ 0.05) were detected in the feed intake and body weight gain at eighth week. Live weight at eighth week was significantly different (P ≤ 0.05) with its values ranging between 503.32 and 614.93 g for treatments TL1Ed and TNeg-, respectively. The dietary treatment of D. edulis leaves, stembark, and seed powder at the two inclusion levels significantly (P ≤ 0.05) decreased the colonies forming unit of Escherichia coli and Salmonella sp. as compared with negative control treatment in the eighth week phase. The level of glucose, total cholesterol, triglycerides, aspartate aminotransferase, alanine amino transferase, alkaline phosphatase, and the packed cell volume did not differ significantly (P ≥ 0.05) between and among dietary D. edulis treatments. The findings from this research provide crucial information on the efficacy and safety of D. edulis plant parts. This is an important step in testing the potential of the plant in use as a prebiotic in chicken feeds production.

Genetic and economic efficiency of integrating reproductive technologies in cattle breeding programme in Kenya.

We hypothesised that use of reproductive technologies (RTs) would result in increases in economic and genetic gains of a dairy cattle breeding programme. A deterministic approach was used to compare RTs that can be utilised to increase dairy cattle productivity and profitability in Kenya. These were artificial insemination (AI), embryo transfer (ET) using old (ETOB) and young (ETYB) bulls and in vitro fertilisation (IVF). Natural mating (NAm) was assumed to be the standard reproduction practice in Kenya against which the genetic and economic efficiencies of the RTs were compared. A three tiers open nucleus system was assumed to describe the dairy cattle breeding programme in Kenya. It was open to use of imported semen in the nucleus. The nucleus was assumed to be closed to upward movement of live animals. This is the common practice in Kenya where large farms act as the nucleus from which the multipliers (medium-sized farms) buy replacement stock and subsequently sell replacement animals to the commercial sector (smallholder farms). The increase in monetary gain ranged between 11% when AI was used and 184% when utilising either juvenile ET or IVF. The ETYB and IVF resulted in similar economic and genetic responses for all comparison criteria. The generation interval reduced by between 0.8% in AI and 47% in ETYB and IVF technologies. The respective milk yield (MY) and daily weight gain (dWG) responses were between 25 to 150% and 0 to 110% for the AI and ETYB and IVF.