Extinct in the wild: The precarious state of Earth's most threatened group of species.

Extinct in the Wild (EW) species are placed at the highest risk of extinction under the International Union for Conservation of Nature Red List, but the extent and variation in this risk have never been evaluated. Harnessing global databases of ex situ animal and plant holdings, we report on the perilous state of EW species. Most EW animal species-already compromised by their small number of founders-are maintained at population sizes far below the thresholds necessary to ensure demographic security. Most EW plant species depend on live propagation by a small number of botanic gardens, with a minority secured at seed bank institutions. Both extinctions and recoveries are possible fates for EW species. We urgently call for international effort to enable the latter.

Genetic diversity in global populations of the critically endangered addax (Addax nasomaculatus) and its implications for conservation.

Threatened species are frequently patchily distributed across small wild populations, ex situ populations managed with varying levels of intensity and reintroduced populations. Best practice advocates for integrated management across in situ and ex situ populations. Wild addax (Addax nasomaculatus) now number fewer than 100 individuals, yet 1000 of addax remain in ex situ populations, which can provide addax for reintroductions, as has been the case in Tunisia since the mid-1980s. However, integrated management requires genetic data to ascertain the relationships between wild and ex situ populations that have incomplete knowledge of founder origins, management histories, and pedigrees. We undertook a global assessment of genetic diversity across wild, ex situ and reintroduced populations in Tunisia to assist conservation planning for this Critically Endangered species. We show that the remnant wild populations retain more mitochondrial haplotypes that are more diverse than the entirety of the ex situ populations across Europe, North America and the United Arab Emirates, and the reintroduced Tunisian population. Additionally, 1704 SNPs revealed that whilst population structure within the ex situ population is minimal, each population carries unique diversity. Finally, we show that careful selection of founders and subsequent genetic management is vital to ensure genetic diversity is provided to, and minimize drift and inbreeding within reintroductions. Our results highlight a vital need to conserve the last remaining wild addax population, and we provide a genetic foundation for determining integrated conservation strategies to prevent extinction and optimize future reintroductions.

Zoological institutions as hotspots of gastrointestinal parasites that may affect the success of ungulate reintroduction programmes.

BACKGROUND: Ungulates from zoological institutions are frequently used as founders in reintroduction programmes. These animals are subject to specific parasite management as parasitic infections have previously been associated with failed Bovidae reintroductions. METHODS: Questionnaires to obtain data on how these institutions screen for seasonal parasite presence and the clinical signs they induced in threatened ungulates were sent to 65 institutions involved in European Ex situ Programmes (58.5% response rate). Temperature and relative humidity data were also obtained to categorize each zoological centre. RESULTS: Strongyloides spp. (52.6%), Trichuris spp. (42.1%), Trichostrongylidae family (39.4%) and Eimeria spp. (36.8%) were the most frequently reported parasites in the received questionnaires. Climatic variables did not influence parasite presence. CONCLUSION: Our results suggest that artificial microenvironments created by husbandry practices and enclosure design in zoos could create hotspots for gastrointestinal parasites. To maximise the success of reintroduction projects, we recommend that the influence of microclimates on parasite burdens be evaluated.

Drivers of sex ratio bias in the eastern bongo: lower inbreeding increases the probability of being born male.

Parent sex ratio allocation has consequences for individual fitness, population dynamics, and conservation. Theory predicts that parents should adjust offspring sex ratio when the fitness returns of producing male or female offspring varies. Previous studies have assumed that only mothers are capable of biasing offspring sex ratios, but have neglected fathers, given the expectation of an equal proportion of X- and Y-chromosome-bearing (CBS) sperm in ejaculates due to sex chromosome segregation at meiosis. This assumption has been recently refuted and both paternal fertility and paternal genetic quality have been shown to bias sex ratios. Here, we simultaneously test the relative contribution of paternal, maternal, and individual genetic quality, as measured by inbreeding, on the probability of being born a son or a daughter, using pedigree and lifelong offspring sex ratio data for the eastern bongo ( Tragelaphus eurycerus isaaci). Our models showed first, that surprisingly, as individual inbreeding decreases the probability of being born male increases, second, that paternal genetic effects on sex ratio were stronger than maternal genetic effects (which were absent). Furthermore, paternal effects were opposite in sign to those predicted; father inbreeding increases the probability of having sons. Previous paternal effects have been interpreted as adaptive due to sex-specific inbreeding depression for reproductive traits. We argue that in the eastern bongo, the opposite sign of the paternal effect on sex ratios results from a reversed sex-specific inbreeding depression pattern (present for female but not male reproductive traits). We anticipate that this research will help stimulate research on evolutionary constraints to sex ratios. Finally, the results open a new avenue of research to predict sex ratio allocation in an applied conservation context. Future models of sex ratio allocation should also include the predicted inbreeding level of the offspring and paternal inbreeding levels.

Survey of husbandry practices for bovidae in zoos: the importance of parasite management for reintroduction programmes.

Animals from zoological institutions may be used for reintroductions. These individuals are considered healthy, but they are not necessarily free of parasites, despite the minimum husbandry standards required of zoological institutions as described in the European Association of Zoos and Aquaria guidelines. In this sense, parasitism has been identified as the cause of failure, or has added difficulties, in some reintroduction programmes. Here the authors attempt to summarise the risk of parasitism to animals originating from zoological institutions by analysing a questionnaire about parasite prevalence, sampling methods, treatment and control in three ungulates in European zoos. Completed questionnaires were received from 38 institutions (58.5 per cent response rate). Most of the responding institutions (97 per cent) detected the eggs of endoparasites in faeces, but only one reported ectoparasites. Most institutions followed a similar preventive schedule, with ivermectin as the preferred prophylactic treatment for parasites, commonly administered in food every six months. The frequent use of concentrating flotation techniques as the sole method to evaluate the presence of parasite eggs in faecal samples is not recommended because it fails to detect trematode and lung nematode infections, so it would be better to use flotation techniques together with sedimentation procedures or serological and molecular tests. The results suggest that parasite control in zoological institutions can be complicated, indicating the need to implement a specific management schedule for institutions involved in reintroduction projects.

Improving generation length estimates for the IUCN Red List.

The International Union for the Conservation of Nature (IUCN) Red List classifies species according to their risk of extinction, informing local to global conservation decisions. Here we look to advance the estimation of generation length, which is used as a time-scalar in the Red List as a way of accounting for differences in species' life-histories. We calculated or predicted generation length for 86 species of antelope following the Rspan approach. We also tested the importance of both allometry (body-mass) and phylogeny (phylogenetic eigenvectors) as predictors of generation length within a Phylogenetic Eigenvector Map (PEM) framework. We then evaluated the predictive power of this PEM and two binning approaches, following a leave-one-out cross-validation routine. We showed that captive and wild longevity data are nonequivalent and that both body-mass and phylogeny are important predictors for generation length (body-mass explained 64% and phylogeny 36% of the partitioned explained variance). Plus, both the PEM, and the binning approach that included both taxonomic rank and body-mass, had good predictive power and therefore are suitable for extrapolating generation length to missing-data species. Therefore, based on our findings, we advise separating captive and wild data when estimating generation length, and considering the implications of wild and captive data more widely in life-history analyses. We also recommend that body-mass and phylogeny should be used in combination, preferably under a PEM framework (as it was less reliant on available reference species and more explicitly accounts for phylogenetic relatedness) or a binning approach if a PEM is not feasible, to extrapolate generation length to missing-data species. Overall, we provide a transparent, consistent and transferable workflow for improving the use of the Rspan method to calculate generation length for the IUCN Red List.

Evaluating Conservation Breeding Success for an Extinct-in-the-Wild Antelope.

With the number of threatened species increasing globally, conservation breeding is vitally important now more than ever. However, no previous peer-reviewed study has attempted to determine how the varying conditions across zoos have influenced breeding by an extinct-in-the-wild species. We therefore use questionnaires and studbook data to evaluate the influence of husbandry practices and enclosure design on scimitar-horned oryx (Oryx dammah) breeding success, at the herd level. Regression models were used to identify the variables that best predicted breeding success among 29 zoos across a five-year period. Calf survival decreased with herd age and the use of soft substrates in hardstand areas (yard area usually adjacent to the indoor housing), explaining 30.7% of overall variation. Calf survival also decreased where herds were small and where food provisions were not raised (and hence likely incited competition), although these were less influential. Likewise, birth rate decreased with soft substrates in hardstand areas and unraised food provisions, although these were less influential than for calf survival. Birth rate increased with year-round male presence, yet this decreased calf survival. Compared to previous studies, the number of enclosure/husbandry influences on breeding were relatively few. Nevertheless, these few enclosure/husbandry influences explained over one third of the variation in calf survival. Our data therefore suggest some potential improvements and hence that extinct-in-the-wild species stand a greater chance of survival with empirical design of zoo enclosures and husbandry methods.