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1.
Microb Ecol ; 84(3): 844-855, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-34697646

RESUMO

Many bacteria of the genus Bradyrhizobium are capable of inducing nodules in legumes. In this work, the importance of a type VI secretion system (T6SS) in a symbiotic strain of the genus Bradyrhizobium is described. T6SS of Bradyrhizobium sp. LmicA16 (A16) is necessary for efficient nodulation with Lupinus micranthus and Lupinus angustifolius. A mutant in the gene vgrG, coding for a component of the T6SS nanostructure, induced less nodules and smaller plants than the wild-type (wt) strain and was less competitive when co-inoculated with the wt strain. A16 T6SS genes are organized in a 26-kb DNA region in two divergent gene clusters of nine genes each. One of these genes codes for a protein (Tsb1) of unknown function but containing a methyltransferase domain. A tsb1 mutant showed an intermediate symbiotic phenotype regarding vgrG mutant and higher mucoidity than the wt strain in free-living conditions. T6SS promoter fusions to the lacZ reporter indicate expression in nodules but not in free-living cells grown in different media and conditions. The analysis of nodule structure revealed that the level of nodule colonization was significantly reduced in the mutants with respect to the wt strain.


Assuntos
Bradyrhizobium , Lupinus , Sistemas de Secreção Tipo VI , Bradyrhizobium/genética , Lupinus/microbiologia , Sistemas de Secreção Tipo VI/genética , Nódulos Radiculares de Plantas/microbiologia , Filogenia , Simbiose/genética
2.
Parasitology ; 146(14): 1796-1802, 2019 12.
Artigo em Inglês | MEDLINE | ID: mdl-31452467

RESUMO

Leishmania rely heavily on glycans to complete their digenetic life cycle in both mammalian and phlebotomine sand fly hosts. Leishmania promastigotes secrete a proteophosphoglycan-rich gel (Promastigote Secretory Gel, PSG) that is regurgitated during transmission and can exacerbate infection in the skin. Here we explored the role of PSG from natural Leishmania-sand fly vector combinations by obtaining PSG from Leishmania (L.) major-infected Phlebotomus (P.) papatasi and P. duboscqi and L. tropica-infected P. arabicus. We found that, in addition to the vector's saliva, the PSG from L. major and L. tropica potently exacerbated cutaneous infection in BALB/c mice, improved the probability of developing a patent cutaneous lesion, parasite growth and the evolution of the lesion. Of note, the presence of PSG in the inoculum more than halved the prepatent period of cutaneous L. tropica infection from an average of 32 weeks to 13 weeks. In addition, L. major and L. tropica PSG extracted from the permissive experimental vector, Lutzomyia (Lu.) longipalpis, also exacerbated infections in mice. These results reinforce and extend the hypothesis that PSG is an important and evolutionarily conserved component of Leishmania infection that can be used to facilitate experimental infection for drug and vaccine screening.


Assuntos
Leishmania major/química , Leishmania tropica/química , Leishmaniose Cutânea/patologia , Proteínas de Membrana/administração & dosagem , Phlebotomus/parasitologia , Proteoglicanas/administração & dosagem , Proteínas de Protozoários/administração & dosagem , Pele/efeitos dos fármacos , Pele/patologia , Animais , Feminino , Leishmaniose Cutânea/parasitologia , Proteínas de Membrana/química , Camundongos , Camundongos Endogâmicos BALB C , Carga Parasitária , Proteoglicanas/química , Proteínas de Protozoários/química , Saliva , Pele/parasitologia , Exacerbação dos Sintomas
3.
J Contam Hydrol ; 192: 165-180, 2016 09.
Artigo em Inglês | MEDLINE | ID: mdl-27500748

RESUMO

In a context of increasing land use pressure (over-exploitation, surface-water contamination) and repeated droughts, identifying the processes affecting groundwater quality in coastal megacities of the tropical and arid countries will condition their long-term social and environmental sustainability. The present study focuses on the Brazilian Recife Metropolitan Region (RMR), which is a highly urbanized area (3,743,854 inhabitants in 2010) on the Atlantic coast located next to an estuarial zone and overlying a multi-layered sedimentary system featured by a variable sediment texture and organic content. It investigates the contamination and redox status patterns conditioning potential attenuation within the shallow aquifers that constitute the interface between the city and the strategic deeper semi-confined aquifers. These latter are increasingly exploited, leading to high drawdown in potenciometric levels of 20-30m and up to 70m in some high well density places, and potentially connected to the surface through leakage. From a multi-tracer approach (major ions, major gases, δ(11)B, δ(18)O-SO4, δ(34)S-SO4) carried out during two field campaigns in September 2012 and March 2013 (sampling of 19 wells and 3 surface waters), it has been possible to assess the contamination sources and the redox processes. The increasing trend for mineralization from inland to coastal and estuarial wells (from 119 to around 10,000µS/cm) is at first attributed to water-rock interactions combined with natural and human-induced potentiometric gradients. Secondly, along with this trend, one finds an environmental pressure gradient related to sewage and/or surface-channel network impacts (typically depleted δ(11)B within the range of 10-15‰) that are purveyors of chloride, nitrate, ammonium and sulfate. Nitrate, ammonium and sulfate (ranging from 0 to 1.70mmol/L, from 0 to 0,65mmol/L, from 0.03 to 3.91mmol/L respectively are also potentially produced or consumed through various redox processes (pyrite oxidation, denitrification, dissimilatory nitrate reduction to ammonium) within the system, as is apparent within a patchwork of biogeochemical reactors. Furthermore, intensive pumping in the coastal area with its high well density punctually leads to temporary well salinization ([Cl] reaching temporarily 79mmol/L). Our results, summarized as a conceptual scheme based on environmental conditions, is a suitable basis for implementing sustainable management in coastal sedimentary hydrosystems influenced by highly urbanized conditions.


Assuntos
Água Subterrânea/análise , Poluentes Químicos da Água/análise , Brasil , Cidades , Desnitrificação , Monitoramento Ambiental/métodos , Estuários , Água Subterrânea/química , Ferro , Nitratos/análise , Oxirredução , Esgotos , Sulfatos/análise , Sulfetos , Poluentes Químicos da Água/química , Qualidade da Água
4.
Sci Total Environ ; 569-570: 1114-1125, 2016 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-27387803

RESUMO

Implying large residence times and complex water origins deep coastal aquifers are of particular interest as they are remarkable markers of climate, water use and land use changes. Over the last decades, the Metropolitan Region of Recife (Brazil) went through extensive environmental changes increasing the pressure on water resources and giving rise to numerous environmental consequences on the coastal groundwater systems. We analysed the groundwater of the deep aquifers Cabo and Beberibe that are increasingly exploited. The processes potentially affecting groundwater residence times and flow paths have been studied using a multi-tracer approach (CFCs, SF6, noble gases, 14C, 2H and 18O). The main findings of these investigations show that: (1) Groundwaters of the Cabo and Beberibe aquifers have long residence times and were recharged about 20,000years ago. (2) Within these old groundwaters we can find palaeo-climate evidences from the last glacial period at the tropics with lower temperatures and dryer conditions than the present climate. (3) Recently, the natural slow dynamic of these groundwater systems was significantly affected by mixing processes with contaminated modern groundwater coming from the shallow unconfined Boa Viagem aquifer. (4) The large exploitation of these aquifers leads to a modification of the flow directions and causes the intrusion through palaeo-channels of saline water probably coming from the Capibaribe River and from the last transgression episodes. These observations indicate that the current exploitation of the Cabo and Beberibe aquifers is unsustainable regarding the long renewal times of these groundwater systems as well as their ongoing contamination and salinisation. The groundwater cycle being much slower than the human development rhythm, it is essential to integrate the magnitude and rapidity of anthropogenic impacts on this extremely slow cycle to the water management concepts.


Assuntos
Água Subterrânea/análise , Camada de Gelo , Salinidade , Poluentes Químicos da Água/análise , Brasil , Monitoramento Ambiental
5.
Environ Pollut ; 148(3): 707-17, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17408824

RESUMO

The Bitterfeld/Wolfen region is a megasite with multiple contaminant sources from more than a century of industrial activity, which have a considerable impact on the environment. At present, the contaminated groundwater covers an area of about 25km(2) and poses a threat for the surrounding aquifers and the Mulde River. This study focuses on the Schachtgraben, a man-made channel in the Mulde Floodplain that collects the effluents of the industrial area. It aims to characterise the relationship between surface water (channels, rivers) and the groundwater in the shallow Quaternary aquifer. Waters are Ca-SO(4) type with TDS reaching 3.8gL(-1) in the industrial area. Stable isotopes (delta(18)O, delta(2)H) show that two of the rivers are recharged mainly by groundwater that can be divided into two groups. Strontium isotopes ((87)Sr/(86)Sr) designate different geochemical end-members and enable the identification of mixing between natural and anthropogenic surface and groundwater.


Assuntos
Deutério/análise , Água Doce/análise , Isótopos de Oxigênio/análise , Isótopos de Estrôncio/análise , Movimentos da Água , Abastecimento de Água/análise , Cloretos/análise , Alemanha , Metais/análise , Nitratos/análise , Nitritos/análise , Compostos de Amônio Quaternário/análise , Sulfatos/análise , Poluentes Químicos da Água/análise
6.
J Appl Microbiol ; 102(4): 1167-76, 2007 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-17381761

RESUMO

AIMS: The aims of this study were: (i) to determine the proportions of Aeromonas spp. resistant to florfenicol (FC), oxolinic acid (OA) and oxytetracycline (OTC) along a river receiving effluents from fish farms, and (ii) to assess the relevance of using this bacterial group as an indicator for studying the consequences of the use and release of these aquacultural antimicrobials in the freshwater environment, as compared with performing antimicrobial measurements in sediments. METHODS AND RESULTS: Sediment interstitial waters sampled along a river during two distinct climatic seasons were plated on an Aeromonas-selective medium supplemented or not with OA, OTC or FC. The October 2004 campaign showed an enrichment of OA- and OTC-resistant Aeromonas immediately downstream of the fish farms and a wastewater treatment plant. Two fish farms showed similar results in March 2005. In contrast, only 10 FC-resistant Aeromonas strains could be isolated, which revealed that minimum inhibitory concentrations of FC were greater than 64 microg ml(-1) and multiple antimicrobial resistances. Contamination of sediments by antimicrobials was detected but was not always co-localized with resistance peaks or known point sources of contamination. CONCLUSIONS: Aeromonas could be valuable indicators of OA, OTC and FC resistance in the freshwater environment. Fish farms contribute to the contamination of the river by antimicrobials and resistant bacteria. SIGNIFICANCE AND IMPACT OF THE STUDY: Considering the still very low proportion of FC-resistant Aeromonas, this study can be considered as a reference for further studies about this recently introduced veterinary antimicrobial agent.


Assuntos
Aeromonas/efeitos dos fármacos , Antibacterianos/farmacologia , Pesqueiros , Peixes/microbiologia , Esgotos/microbiologia , Microbiologia da Água , Aeromonas/isolamento & purificação , Animais , Biomarcadores/análise , Resistência Microbiana a Medicamentos , Água Doce , Tianfenicol/análogos & derivados , Tianfenicol/farmacologia
7.
Can J Microbiol ; 47(6): 503-8, 2001 Jun.
Artigo em Francês | MEDLINE | ID: mdl-11469252

RESUMO

We studied a collection of 126 rhizobial isolates from eight species of Crotalaria (C. comosa, C. glaucoides, C. goreensis, C. hyssopifolia, C. lathyroides, C. perrottetii, C. podocarpa, and C. retusa) growing in Senegal. Nodulation and nitrogen-fixation tests on nine Crotalaria species revealed two specificity groups within the genus Crotalaria. Group I consists of plants solely nodulated by very specific fast-growing strains. Group II plants are nodulated by slow-growing strains similar to promiscuous Bradyrhizobium spp. strains already reported to nodulate many tropical legumes. SDS-PAGE studies showed that slow-growing strains grouped with Bradyrhizobium while fast-growing strains constituted a homogeneous group distinct from all known rhizobia. Amplified ribosomal DNA restriction analysis (ARDRA) of 10 representative strains of this group using four restriction enzymes showed a single pattern for each enzyme confirming the high homogeneity of group I. The 16S rDNA sequence analysis revealed that this specific group belonged to the genus Methylobacterium, thus constituting a new branch of nodulating bacteria.


Assuntos
Crotalaria/microbiologia , Methylobacterium/classificação , Methylobacterium/genética , Simbiose , Bradyrhizobium/classificação , Bradyrhizobium/genética , Crotalaria/classificação , DNA Ribossômico/análise , Eletroforese em Gel de Poliacrilamida , Filogenia , RNA Ribossômico 16S/genética , Mapeamento por Restrição
8.
J Antimicrob Chemother ; 47(3): 341-3, 2001 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-11222567

RESUMO

Fluoroquinolone resistance was characterized in Escherichia coli O78:K80 isolated from diseased turkeys. The level of resistance to fluoroquinolones of the isolates appeared closely correlated with substitutions in GyrA and ParC, but not with the production of the AcrAB efflux pump. Among isolates highly resistant to ciprofloxacin (MIC 8 mg/L) and harbouring identical substitutions (two in GyrA and one in ParC), two close but distinguishable ribotypes were identified. This indicated that at least two independent selection events may have occurred.


Assuntos
Anti-Infecciosos/farmacologia , Proteínas de Transporte , Resistência Microbiana a Medicamentos , Proteínas de Escherichia coli , Escherichia coli/efeitos dos fármacos , Fluoroquinolonas , Perus/microbiologia , Substituição de Aminoácidos , Animais , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Western Blotting , Ciprofloxacina/farmacologia , DNA Girase , DNA Topoisomerase IV , DNA Topoisomerases Tipo II/genética , DNA Bacteriano/genética , Proteínas de Ligação a DNA/genética , Enrofloxacina , Escherichia coli/genética , Escherichia coli/isolamento & purificação , Lipoproteínas/metabolismo , Proteínas de Membrana/metabolismo , Proteínas de Membrana Transportadoras , Testes de Sensibilidade Microbiana , Proteínas Associadas à Resistência a Múltiplos Medicamentos , Mutação , Ácido Nalidíxico/farmacologia , Quinolizinas/farmacologia , Quinolonas/farmacologia , RNA Ribossômico 16S/genética , RNA Ribossômico 23S/genética
9.
FEMS Microbiol Lett ; 194(1): 83-6, 2001 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-11150670

RESUMO

We isolated and characterized nodA genes from photosynthetic and non-photosynthetic rhizobia nodulating the legume genus Aeschynomene, and found that the nodA sequence from photosynthetic stem-nodulating bacteria was phylogenetically distant from the other already described nodA genes. Characterization of the photosynthetic strain ORS285 common nod gene cluster (nodABC) showed, upstream of nodA, the presence of a new insertion sequence element belonging to the IS3 family and specific to a group of photosynthetic strains from Aeschynomene.


Assuntos
Aciltransferases/genética , Bradyrhizobium/genética , Elementos de DNA Transponíveis , Genes Bacterianos , Fixação de Nitrogênio/genética , Fotossíntese/fisiologia , Proteínas de Bactérias , Bradyrhizobium/fisiologia , Fabaceae/microbiologia , Biblioteca Genômica , Dados de Sequência Molecular , Família Multigênica , Filogenia , Plantas Medicinais , Reação em Cadeia da Polimerase , Análise de Sequência de DNA
10.
J Bacteriol ; 183(1): 214-20, 2001 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-11114919

RESUMO

Rhizobia described so far belong to three distinct phylogenetic branches within the alpha-2 subclass of Proteobacteria. Here we report the discovery of a fourth rhizobial branch involving bacteria of the Methylobacterium genus. Rhizobia isolated from Crotalaria legumes were assigned to a new species, "Methylobacterium nodulans," within the Methylobacterium genus on the basis of 16S ribosomal DNA analyses. We demonstrated that these rhizobia facultatively grow on methanol, which is a characteristic of Methylobacterium spp. but a unique feature among rhizobia. Genes encoding two key enzymes of methylotrophy and nodulation, the mxaF gene, encoding the alpha subunit of the methanol dehydrogenase, and the nodA gene, encoding an acyltransferase involved in Nod factor biosynthesis, were sequenced for the type strain, ORS2060. Plant tests and nodA amplification assays showed that "M. nodulans" is the only nodulating Methylobacterium sp. identified so far. Phylogenetic sequence analysis showed that "M. nodulans" NodA is closely related to Bradyrhizobium NodA, suggesting that this gene was acquired by horizontal gene transfer.


Assuntos
Fabaceae/microbiologia , Metanol/metabolismo , Methylobacterium/classificação , Methylobacterium/fisiologia , Fixação de Nitrogênio/fisiologia , Plantas Medicinais , Simbiose , Aciltransferases/genética , Oxirredutases do Álcool/genética , Proteínas de Bactérias , DNA Bacteriano/análise , DNA Bacteriano/genética , DNA Ribossômico/análise , DNA Ribossômico/genética , Methylobacterium/genética , Methylobacterium/isolamento & purificação , Dados de Sequência Molecular , Oxirredução , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Especificidade da Espécie
11.
Appl Environ Microbiol ; 66(12): 5437-47, 2000 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-11097925

RESUMO

We investigated the presence of endophytic rhizobia within the roots of the wetland wild rice Oryza breviligulata, which is the ancestor of the African cultivated rice Oryza glaberrima. This primitive rice species grows in the same wetland sites as Aeschynomene sensitiva, an aquatic stem-nodulated legume associated with photosynthetic strains of Bradyrhizobium. Twenty endophytic and aquatic isolates were obtained at three different sites in West Africa (Senegal and Guinea) from nodal roots of O. breviligulata and surrounding water by using A. sensitiva as a trap legume. Most endophytic and aquatic isolates were photosynthetic and belonged to the same phylogenetic Bradyrhizobium/Blastobacter subgroup as the typical photosynthetic Bradyrhizobium strains previously isolated from Aeschynomene stem nodules. Nitrogen-fixing activity, measured by acetylene reduction, was detected in rice plants inoculated with endophytic isolates. A 20% increase in the shoot growth and grain yield of O. breviligulata grown in a greenhouse was also observed upon inoculation with one endophytic strain and one Aeschynomene photosynthetic strain. The photosynthetic Bradyrhizobium sp. strain ORS278 extensively colonized the root surface, followed by intercellular, and rarely intracellular, bacterial invasion of the rice roots, which was determined with a lacZ-tagged mutant of ORS278. The discovery that photosynthetic Bradyrhizobium strains, which are usually known to induce nitrogen-fixing nodules on stems of the legume Aeschynomene, are also natural true endophytes of the primitive rice O. breviligulata could significantly enhance cultivated rice production.


Assuntos
Bradyrhizobium/isolamento & purificação , Oryza/microbiologia , Sequência de Bases , Bradyrhizobium/genética , Bradyrhizobium/metabolismo , Primers do DNA/genética , Genes Bacterianos , Guiné , Dados de Sequência Molecular , Fixação de Nitrogênio , Oryza/metabolismo , Fotossíntese , Filogenia , Raízes de Plantas/microbiologia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Senegal , Simbiose , Microbiologia da Água
12.
Proc Natl Acad Sci U S A ; 97(26): 14795-800, 2000 Dec 19.
Artigo em Inglês | MEDLINE | ID: mdl-11114184

RESUMO

Some leguminous species of the genus Aeschynomene are specifically stem-nodulated by photosynthetic bradyrhizobia. To study the effect of bacterial photosynthesis during symbiosis, we generated a photosynthesis-negative mutant of the Bradyrhizobium sp. strain ORS278 symbiont of Aeschynomene sensitiva. The presence of a functional photosynthetic unit in bacteroids and the high expression of the photosynthetic genes observed in stem nodules demonstrate that the bacteria are photosynthetically active during stem symbiosis. Stem inoculation by the photosynthetic mutant gave a 50% decrease in stem-nodule number, which reduced nitrogen fixation activity and plant growth in the same proportion. These results indicate an important role of bacterial photosynthesis in the efficiency of stem nodulation.


Assuntos
Proteínas de Bactérias , Bradyrhizobium/fisiologia , Fabaceae/microbiologia , Complexos de Proteínas Captadores de Luz , Fotossíntese/fisiologia , Complexo de Proteínas do Centro de Reação Fotossintética/metabolismo , Plantas Medicinais , Sequência de Bases , Bradyrhizobium/genética , DNA Bacteriano , Expressão Gênica , Heme Oxigenase (Desciclizante)/genética , Heme Oxigenase (Desciclizante)/metabolismo , Dados de Sequência Molecular , Mutagênese , Óperon , Fenótipo , Complexo de Proteínas do Centro de Reação Fotossintética/genética , Simbiose
13.
J Bacteriol ; 182(13): 3850-3, 2000 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-10851005

RESUMO

A carotenoid biosynthesis gene cluster involved in canthaxanthin production was isolated from the photosynthetic Bradyrhizobium sp. strain ORS278. This cluster includes five genes identified as crtE, crtY, crtI, crtB, and crtW that are organized in at least two operons. The functional assignment of each open reading frame was confirmed by complementation studies.


Assuntos
Alquil e Aril Transferases/genética , Proteínas de Bactérias/genética , Bradyrhizobium/enzimologia , Cantaxantina/biossíntese , Genes Bacterianos , Liases Intramoleculares/genética , Família Multigênica , Oxirredutases/genética , Oxigenases/genética , Sequência de Bases , Bradyrhizobium/classificação , Bradyrhizobium/genética , Carotenoides/biossíntese , DNA Bacteriano , Escherichia coli/metabolismo , Geranil-Geranildifosfato Geranil-Geraniltransferase , Dados de Sequência Molecular , Transformação Bacteriana
14.
J Med Chem ; 43(9): 1807-16, 2000 May 04.
Artigo em Inglês | MEDLINE | ID: mdl-10794697

RESUMO

We have investigated the combined use of partial least squares (PLS) and statistical design principles in principal property space (PP-space), derived from principal component analysis (PCA), to analyze farnesyltransferase inhibitors in order to identify "activity trends" (an approach we call a "directional" approach) and quantitative structure-activity relationships (QSAR) for a congeneric series of inhibitors: the benzo[f]perhydroisoindole (BPHI) series. Trends observed in the PCA showed that the descriptors used were relevant to describe our structural data set by clearly identifying two well-defined structural subclasses of inhibitors. D-Optimal design techniques allowed us to define a training set for PLS study in PP-space. Models were derived for each biological assay under evaluation: the in vitro Ki-Ras and cellular HCT116 tests. Each of these assay-based sets was subdivided once more into two subsets according to two structural classes in this BPHI series as revealed by the PCA model. The response surface modeling (RSM) methodology was used for each subset, and the corresponding RSM plots helped us identify "activity trends" exploited to guide further analogue design. For more precise activity predictions more refined PLS models on constrained PP-spaces were developed for each subset. This approach was validated with predicted sets and demonstrates that useful information can be extracted from just a few very informative and representative compounds. Finally, we also showed the potential use of such a strategy at an early stage of an optimization process to extract the first "activity trends" that might support decision making and guide medicinal chemists in the initial design of new analogues and/or lead followup libraries.


Assuntos
Alquil e Aril Transferases/antagonistas & inibidores , Inibidores Enzimáticos/síntese química , Alquil e Aril Transferases/química , Inteligência Artificial , Simulação por Computador , Bases de Dados como Assunto , Desenho de Fármacos , Inibidores Enzimáticos/química , Inibidores Enzimáticos/farmacologia , Análise dos Mínimos Quadrados , Modelos Químicos , Análise Multivariada , Relação Estrutura-Atividade , Proteínas ras/química
15.
Antimicrob Agents Chemother ; 44(5): 1223-8, 2000 May.
Artigo em Inglês | MEDLINE | ID: mdl-10770755

RESUMO

The occurrence of active efflux and cell wall modifications were studied in Salmonella enterica serovar Typhimurium mutants that were selected with enrofloxacin and whose phenotypes of resistance to fluoroquinolones could not be explained only by mutations in the genes coding for gyrase or topoisomerase IV. Mutant BN18/21 exhibited a decreased susceptibility to ciprofloxacin (MIC = 0.125 microg/ml) but did not have a mutation in the gyrA gene. Mutants BN18/41 and BN18/71 had the same substitution, Gly81Cys in GyrA, but exhibited different levels of resistance to ciprofloxacin (MICs = 2 and 8 microg/ml, respectively). None of the mutants had mutations in the parC gene. Evidence for active efflux was provided by a classical fluorimetric method, which revealed a three- to fourfold decrease in ciprofloxacin accumulation in the three mutants compared to that in the parent strain, which was annulled by addition of the efflux pump inhibitor carbonyl cyanide m-chlorophenylhydrazone. In mutant BN18/71, a second fluorimetric method also showed a 50% reduction in the level of accumulation of ethidium bromide, a known efflux pump substrate. Immunoblotting and enzyme-linked immunosorbent assay experiments with an anti-AcrA antibody revealed that the resistance phenotype was strongly correlated with the expression level of the AcrAB efflux pump and suggested that decreased susceptibility to ciprofloxacin due to active efflux probably related to overproduction of this pump could occur before that due to gyrA mutations. Alterations were also found in the outer membrane protein and lipopolysaccharide profiles of the mutants, and these alterations were possibly responsible for the decrease in the permeability of the outer membrane that was observed in the mutants and that could act synergistically with active efflux to decrease the level of ciprofloxacin accumulation.


Assuntos
Anti-Infecciosos/metabolismo , Ciprofloxacina/metabolismo , Proteínas de Escherichia coli , Salmonella enterica/efeitos dos fármacos , Anti-Infecciosos/farmacologia , Proteínas de Bactérias/biossíntese , Transporte Biológico Ativo , Permeabilidade da Membrana Celular , Ciprofloxacina/farmacologia , Resistência Microbiana a Medicamentos/fisiologia , Etídio/metabolismo , Lipoproteínas/biossíntese , Proteínas de Membrana Transportadoras , Testes de Sensibilidade Microbiana , Salmonella enterica/metabolismo
16.
Antimicrob Agents Chemother ; 43(9): 2131-7, 1999 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-10471553

RESUMO

The occurrence of mutations in the genes coding for gyrase (gyrA and gyrB) and topoisomerase IV (parE and parC) of Salmonella typhimurium experimental mutants selected in vitro and in vivo and of 138 nalidixic acid-resistant Salmonella field isolates was investigated. The sequencing of the quinolone resistance-determining region of these genes in highly fluoroquinolone-resistant mutants (MICs of 4 to 16 microg/ml) revealed the presence of gyrA mutations at codons corresponding to Gly-81 or Ser-83, some of which were associated with a mutation at Asp-87. No mutations were found in the gyrB, parC, and parE genes. An assay combining allele-specific PCR and restriction fragment length polymorphism was developed to rapidly screen mutations at codons 81, 83, and 87 of gyrA. The MICs of ciprofloxacin for the field isolates reached only 2 microg/ml, versus 16 microg/ml for some in vitro-selected mutants. The field isolates, like the mutants selected in vivo, had only a single gyrA mutation at codon 83 or 87. Single gyrA mutations were also found in highly resistant in vitro-selected mutants (MIC of ciprofloxacin, 8 microg/ml), which indicates that mechanisms other than the unique modification of the intracellular targets could participate in fluoroquinolone resistance in Salmonella spp. A comparison of experimental mutants selected in vitro, field strains, and mutants selected in vivo suggests that highly fluoroquinolone-resistant strains are counterselected in field conditions in the absence of selective pressure.


Assuntos
Anti-Infecciosos/farmacologia , Ciprofloxacina/farmacologia , DNA Topoisomerases Tipo II/efeitos dos fármacos , DNA Topoisomerases Tipo II/genética , Fluoroquinolonas , Salmonella typhimurium/genética , Animais , Anti-Infecciosos/uso terapêutico , Antineoplásicos/uso terapêutico , Galinhas , Resistência Microbiana a Medicamentos/genética , Enrofloxacina , Testes de Sensibilidade Microbiana , Mutação , Fenótipo , Reação em Cadeia da Polimerase , Quinolonas/uso terapêutico , Salmonella typhimurium/classificação , Salmonella typhimurium/efeitos dos fármacos , Sorotipagem
17.
Appl Environ Microbiol ; 65(7): 3084-94, 1999 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-10388707

RESUMO

We obtained nine bacterial isolates from root or collar nodules of the non-stem-nodulated Aeschynomene species A. elaphroxylon, A. uniflora, or A. schimperi and 69 root or stem nodule isolates from the stem-nodulated Aeschynomene species A. afraspera, A. ciliata, A. indica, A. nilotica, A. sensitiva, and A. tambacoundensis from various places in Senegal. These isolates, together with 45 previous isolates from various Aeschynomene species, were studied for host-specific nodulation within the genus Aeschynomene, also revisiting cross-inoculation groups described previously by D. Alazard (Appl. Environ. Microbiol. 50:732-734, 1985). The whole collection of Aeschynomene nodule isolates was screened for synthesis of photosynthetic pigments by spectrometry, high-pressure liquid chromatography, and thin-layer chromatography analyses. The presence of puf genes in photosynthetic Aeschynomene isolates was evidenced both by Southern hybridization with a Rhodobacter capsulatus photosynthetic gene probe and by DNA amplification with primers defined from photosynthetic genes. In addition, amplified 16S ribosomal DNA restriction analysis was performed on 45 Aeschynomene isolates, including strain BTAi1, and 19 reference strains from Bradyrhizobium japonicum, Bradyrhizobium elkanii, and other Bradyrhizobium sp. strains of uncertain taxonomic positions. The 16S rRNA gene sequence of the photosynthetic strain ORS278 (LMG 12187) was determined and compared to sequences from databases. Our main conclusion is that photosynthetic Aeschynomene nodule isolates share the ability to nodulate particular stem-nodulated species and form a separate subbranch on the Bradyrhizobium rRNA lineage, distinct from B. japonicum and B. elkanii.


Assuntos
Bradyrhizobium/classificação , Bradyrhizobium/fisiologia , Fabaceae/microbiologia , Fotossíntese , Plantas Medicinais , RNA Ribossômico 16S/genética , Bradyrhizobium/genética , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Genes Bacterianos , Genes de RNAr , Dados de Sequência Molecular , Filogenia , Polimorfismo de Fragmento de Restrição , Padrões de Referência , Mapeamento por Restrição , Análise de Sequência de DNA , Especificidade da Espécie
18.
Gene ; 198(1-2): 149-57, 1997 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-9370276

RESUMO

The alpha-amylase gene (amyA) of Lactobacillus plantarum A6 was isolated from the genome by polymerase chain reaction with degenerated oligonucleotides, synthesized according to the tryptic peptide amino acid sequences of the purified enzyme. Nucleic acid sequence analysis revealed one open reading frame of 2739 bp encoding a 913 amino acid protein. The amylase appears to be divided into two equal parts. The N-terminal part has the typical characteristics of the well-known alpha-amylase family (65% identity with the alpha-amylase of Bacillus subtilis and 97% identity with the partial sequence available for the alpha-amylase of Lactobacillus amylovorus). The C-terminal part displays a fairly unusual structure. It consists of four direct tandem repeated sequences of 104 amino acids sharing 100% similarity. The complete nucleotide sequence of the alpha-amylase gene of L. amylovorus was also determined. An open reading frame of 2862 bp encoding a 954 amino acid protein was identified. Perfect homology between the two amyA genes was observed in the N-terminal region. The C-terminal part of L. amylovorus alpha-amylase also included tandem repeat units but striking differences were observed: (i) the addition of one repeat unit; (ii) a shorter, 91 amino acid repetition unit. These structural homologies suggest that both genes have a common ancestor and may have evolved independently by duplication with subsequent recombination and mutation.


Assuntos
DNA Bacteriano/genética , Genes Bacterianos , Lactobacillus/genética , alfa-Amilases/genética , Sequência de Aminoácidos , Bacillus subtilis/enzimologia , Bacillus subtilis/genética , Sequência de Bases , Evolução Biológica , Lactobacillus/enzimologia , Dados de Sequência Molecular , Sequências Repetitivas de Ácido Nucleico , Alinhamento de Sequência
19.
Nephrol Dial Transplant ; 11(8): 1542-6, 1996 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-8856208

RESUMO

OBJECTIVE: To determine the age- and gender-related incidence of chronic renal failure in a French urban area. METHODS: Prospective study of adult patients newly identified as having established, chronic renal failure defined by serum creatinine (Scr) > or = 200 mumol/l, with the cooperation of all nephrology and dialysis units in the Ile de France district (10,660,000 inhabitants) during a 1-year period. RESULTS: 2775 patients (1780 males, 995 females) were referred with Scr > or = 200 mumol/l between July 1991 and June 1992, an overall incidence of 260/million population. 847 had advanced renal failure (Scr > or = 500 mumol/l) and 541 patients (19.5%) were > or = 75 years of age. The age-related incidence was 92, 264, 523 and 619/million population in the age groups 20-39, 40-59, 60-74 and > or = 75 years old, respectively. The annual incidence was twice as high in males than in females up to 75 years and three times as high in patients > or = 75 years (1124 vs 356/million population). Based on the proportion of patients reaching end-stage renal failure within one year of referral, the minimal estimation of the need for supportive therapy is 81/million/year. CONCLUSIONS: This epidemiological study in a large French urban area indicates an incidence of 260 patients per million population annually referred to nephrology units for chronic renal failure defined by Scr > or = 200 mumol/l, with a marked preponderance of males and a dramatic increase of incidence with age in both genders.


Assuntos
Falência Renal Crônica/epidemiologia , Saúde da População Urbana , Adulto , Distribuição por Idade , Idoso , Feminino , França , Humanos , Incidência , Estudos Longitudinais , Masculino , Pessoa de Meia-Idade , Projetos Piloto , Estudos Prospectivos , Fatores Sexuais
20.
Nephrologie ; 17(8): 429-34, 1996.
Artigo em Francês | MEDLINE | ID: mdl-9036365

RESUMO

In order to assess the incidence of chronic renal failure (CRF) and the demographic characteristics of affected patients, a prospective, multicenter epidemiologic study was conducted with the cooperation of all nephrology and dialysis units in the Ile-de-France district, the total population of which is 10660000 inhabitants (source: national census, march 1990). Included were patients with a plasma creatinine (Pcr) concentration > or = 200 mumol/l referred during the one-year period from July 1, 1991 until June 30, 1992. The overall response rate was 98.5%. A total of 2775 adult patients were recorded, including 1780 males (64%) with a mean (+/- SD) age of 58.1 +/- 16.3 years and a mean Pcr of 447 +/- 214 mumol/l, and 995 females (36%) with a mean age of 59.2 +/- 16.4 years and a mean Pcr of 425 +/- 185 mumol/l. Age of patients was < 40 in 16%, 40-59 in 31%, 60-74 in 34% and > or = 75 years in 19%. Pcr was 200-399 mumol/l in 54%, 400-599 mumol/l in 25%, 600-799 mumol/l in 12% and > or = 800 mumol/l in 9%. The overall incidence of CRF was 260/million population/year, twice higher in males than in females (348 vs 179/10(6)/year, p < 0.001). Incidence of CRF dramatically rose with age in both genders, with figures as high as 1124 and 356/10(6)/year respectively in male and female patients aged > or = 75 years, vs 288 and 151/10(6)/year in patients aged < 40 years. A sequential evaluation was performed in a representative sample of 251 patients with initial Pcr > or = 300 mumol/l. End-stage renal failure (ESRF) was reached within one year in 99% of patients with PCr > 600, 49% with Pcr 500-599, 24% with PCr 400-499 and 11% with PCr 300-399 mumol/l. Based on these figures, the predicted incidence of ESRF within one year of referral was 864 out of the 2775 patients, an estimated annual incidence of 81 patients per million population. In conclusion, this prospective study affords the first direct information on the incidence of chronic renal failure and the demographic characteristics of patients with CRF in the Ile-de-France district. Due to the design of the study conducted only in nephrology units, the estimated figure of 81 new patients per million population per year reaching ESRF is a minimal evaluation. In view of the relentless aging of population in France, an incidence of at least 100 ESRF patients per million population per year is to be expected in the next future.


Assuntos
Falência Renal Crônica/epidemiologia , Adulto , Idoso , Creatinina/sangue , Feminino , Humanos , Estudos Longitudinais , Masculino , Pessoa de Meia-Idade , Estudos Prospectivos
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