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1.
Mol Biol Cell ; 30(17): 2331-2347, 2019 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-31216232

RESUMO

Syk/Zap70 family kinases are essential for signaling via multichain immune-recognition receptors such as tetrameric (αßγ2) FcεRI. Syk activation is generally attributed to cis binding of its tandem SH2 domains to dual phosphotyrosines within FcεRIγ-ITAMs (immunoreceptor tyrosine-based activation motifs). However, the mechanistic details of Syk docking on γ homodimers are unresolved. Here, we estimate that multivalent interactions for WT Syk improve cis-oriented binding by three orders of magnitude. We applied molecular dynamics (MD), hybrid MD/worm-like chain polymer modeling, and live cell imaging to evaluate relative binding and signaling output for all possible cis and trans Syk-FcεRIγ configurations. Syk binding is likely modulated during signaling by autophosphorylation on Y130 in interdomain A, since a Y130E phosphomimetic form of Syk is predicted to lead to reduced helicity of interdomain A and alter Syk's bias for cis binding. Experiments in reconstituted γ-KO cells, whose γ subunits are linked by disulfide bonds, as well as in cells expressing monomeric ITAM or hemITAM γ-chimeras, support model predictions that short distances between γ ITAM pairs are required for trans docking. We propose that the full range of docking configurations improves signaling efficiency by expanding the combinatorial possibilities for Syk recruitment, particularly under conditions of incomplete ITAM phosphorylation.


Assuntos
Receptores de IgE/metabolismo , Quinase Syk/metabolismo , Quinase Syk/ultraestrutura , Sequência de Aminoácidos , Animais , Linhagem Celular Tumoral , Humanos , Peptídeos e Proteínas de Sinalização Intracelular/metabolismo , Modelos Biológicos , Modelos Teóricos , Fosforilação , Fosfotirosina/metabolismo , Proteínas Tirosina Quinases/metabolismo , Receptores de IgE/ultraestrutura , Transdução de Sinais , Tirosina/metabolismo , Proteína-Tirosina Quinase ZAP-70 , Domínios de Homologia de src
2.
Biophys J ; 108(10): 2481-2491, 2015 May 19.
Artigo em Inglês | MEDLINE | ID: mdl-25992726

RESUMO

The regulation of T-cell-mediated immune responses depends on the phosphorylation of immunoreceptor tyrosine-based activation motifs (ITAMs) on T-cell receptors. Although many details of the signaling cascades are well understood, the initial mechanism and regulation of ITAM phosphorylation remains unknown. We used molecular dynamics simulations to study the influence of different compositions of lipid bilayers on the membrane association of the CD3ϵ cytoplasmic tails of the T-cell receptors. Our results show that binding of CD3ϵ to membranes is modulated by both the presence of negatively charged lipids and the lipid order of the membrane. Free-energy calculations reveal that the protein-membrane interaction is favored by the presence of nearby basic residues and the ITAM tyrosines. Phosphorylation minimizes membrane association, rendering the ITAM motif more accessible to binding partners. In systems mimicking biological membranes, the CD3ϵ chain localization is modulated by different facilitator lipids (e.g., gangliosides or phosphoinositols), revealing a plausible regulatory effect on activation through the regulation of lipid composition in cell membranes.


Assuntos
Proteínas Intrinsicamente Desordenadas/química , Bicamadas Lipídicas/metabolismo , Receptores de Antígenos de Linfócitos T/química , Motivos de Aminoácidos , Sequência de Aminoácidos , Gangliosídeos/metabolismo , Humanos , Proteínas Intrinsicamente Desordenadas/metabolismo , Bicamadas Lipídicas/química , Simulação de Dinâmica Molecular , Dados de Sequência Molecular , Fosfatidilinositóis/metabolismo , Ligação Proteica , Estrutura Terciária de Proteína , Receptores de Antígenos de Linfócitos T/metabolismo
3.
PLoS Comput Biol ; 10(1): e1003431, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-24499928

RESUMO

A few broadly neutralizing antibodies, isolated from HIV-1 infected individuals, recognize epitopes in the membrane proximal external region (MPER) of gp41 that are transiently exposed during viral entry. The best characterized, 4E10 and 2F5, are polyreactive, binding to the viral membrane and their epitopes in the MPER. We present a model to calculate, for any antibody concentration, the probability that during the pre-hairpin intermediate, the transient period when the epitopes are first exposed, a bound antibody will disable a trivalent gp41 before fusion is complete. When 4E10 or 2F5 bind to the MPER, a conformational change is induced that results in a stably bound complex. The model predicts that for these antibodies to be effective at neutralization, the time to disable an epitope must be shorter than the time the antibody remains bound in this conformation, about five minutes or less for 4E10 and 2F5. We investigate the role of avidity in neutralization and show that 2F5 IgG, but not 4E10, is much more effective at neutralization than its Fab fragment. We attribute this to 2F5 interacting more stably than 4E10 with the viral membrane. We use the model to elucidate the parameters that determine the ability of these antibodies to disable epitopes and propose an extension of the model to analyze neutralization data. The extended model predicts the dependencies of IC50 for neutralization on the rate constants that characterize antibody binding, the rate of fusion of gp41, and the number of gp41 bridging the virus and target cell at the start of the pre-hairpin intermediate. Analysis of neutralization experiments indicate that only a small number of gp41 bridges must be disabled to prevent fusion. However, the model cannot determine the exact number from neutralization experiments alone.


Assuntos
Anticorpos Monoclonais/química , Anticorpos Anti-HIV/química , Proteína gp41 do Envelope de HIV/química , Infecções por HIV/imunologia , Infecções por HIV/virologia , Linfócitos T/virologia , Anticorpos Neutralizantes/química , Anticorpos Amplamente Neutralizantes , Adesão Celular , Epitopos/química , Humanos , Fragmentos de Imunoglobulinas/química , Imunoglobulina G/química , Concentração Inibidora 50 , Probabilidade , Conformação Proteica , Internalização do Vírus
4.
Biophys J ; 104(3): 622-32, 2013 Feb 05.
Artigo em Inglês | MEDLINE | ID: mdl-23442913

RESUMO

Sugar recognition at the membrane is critical in various physiological processes. Many aspects of sugar-membrane interaction are still unknown. We take an integrated approach by combining conventional molecular-dynamics simulations with enhanced sampling methods and analytical models to understand the thermodynamics and kinetics of a di-mannose molecule in a phospholipid bilayer system. We observe that di-mannose has a slight preference to localize at the water-phospholipid interface. Using umbrella sampling, we show the free energy bias for this preferred location to be just -0.42 kcal/mol, which explains the coexistence of attraction and exclusion mechanisms of sugar-membrane interaction. Accurate estimation of absolute entropy change of water molecules with a two-phase model indicates that the small energy bias is the result of a favorable entropy change of water molecules. Then, we incorporate results from molecular-dynamics simulation in two different ways to an analytical diffusion-reaction model to obtain association and dissociation constants for di-mannose interaction with membrane. Finally, we verify our approach by predicting concentration dependence of di-mannose recognition at the membrane that is consistent with experiment. In conclusion, we provide a combined approach for the thermodynamics and kinetics of a weak ligand-binding system, which has broad implications across many different fields.


Assuntos
Dissacarídeos/química , Bicamadas Lipídicas/química , Termodinâmica , Cinética , Lipídeos/química , Manose/química , Água/química
5.
PLoS One ; 7(3): e28758, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22396725

RESUMO

The linker for activation of T cells (LAT), the linker for activation of B cells (LAB), and the linker for activation of X cells (LAX) form a family of transmembrane adaptor proteins widely expressed in lymphocytes. These scaffolding proteins have multiple binding motifs that, when phosphorylated, bind the SH2 domain of the cytosolic adaptor Grb2. Thus, the valence of LAT, LAB and LAX for Grb2 is variable, depending on the strength of receptor activation that initiates phosphorylation. During signaling, the LAT population will exhibit a time-varying distribution of Grb2 valences from zero to three. In the cytosol, Grb2 forms 1:1 and 2:1 complexes with the guanine nucleotide exchange factor SOS1. The 2:1 complex can bridge two LAT molecules when each Grb2, through their SH2 domains, binds to a phosphorylated site on a separate LAT. In T cells and mast cells, after receptor engagement, receptor phosphoyrlation is rapidly followed by LAT phosphorylation and aggregation. In mast cells, aggregates containing more than one hundred LAT molecules have been detected. Previously we considered a homogeneous population of trivalent LAT molecules and showed that for a range of Grb2, SOS1 and LAT concentrations, an equilibrium theory for LAT aggregation predicts the formation of a gel-like phase comprising a very large aggregate (superaggregate). We now extend this theory to investigate the effects of a distribution of Grb2 valence in the LAT population on the formation of LAT aggregates and superaggregate and use stochastic simulations to calculate the fraction of the total LAT population in the superaggregate.


Assuntos
Proteínas Adaptadoras de Transdução de Sinal/química , Proteína Adaptadora GRB2/química , Proteínas de Membrana/química , Proteína SOS1/química , Motivos de Aminoácidos , Animais , Sítios de Ligação , Biofísica/métodos , Membrana Celular/metabolismo , Reagentes de Ligações Cruzadas/farmacologia , Citosol/metabolismo , Humanos , Cinética , Camundongos , Fosforilação , Ratos , Transdução de Sinais , Processos Estocásticos , Linfócitos T/metabolismo
6.
PLoS One ; 7(12): e51669, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23284735

RESUMO

We present a model of the early events in mast cell signaling mediated by FcεRI where the plasma membrane is composed of many small ordered lipid domains (rafts), surrounded by a non-order region of lipids consisting of the remaining plasma membrane. The model treats the rafts as transient structures that constantly form and breakup, but that maintain a fixed average number per cell. The rafts have a high propensity for harboring Lyn kinase, aggregated, but not unaggregated receptors, and the linker for the activation of T cells (LAT). Phosphatase activity in the rafts is substantially reduced compared to the nonraft region. We use the model to analyze published experiments on the rat basophilic leukemia (RBL)-2H3 cell line that seem to contradict the notion that rafts offer protection. In these experiments IgE was cross-linked with a multivalent antigen and then excess monovalent hapten was added to break-up cross-links. The dephosphorylation of the unaggregated receptor (nonraft associated) and of LAT (raft associated) were then monitored in time and found to decay at similar rates, leading to the conclusion that rafts offer no protection from dephosphorylation. In the model, because the rafts are transient, a protein that is protected while in a raft will be subject to dephosphorylation when the raft breaks up and the protein finds itself in the nonraft region of the membrane. We show that the model is consistent with the receptor and LAT dephosphorylation experiments while still allowing rafts to enhance signaling by providing substantial protection from phosphatases.


Assuntos
Imunoglobulina E/metabolismo , Leucemia Basofílica Aguda/metabolismo , Mastócitos/metabolismo , Microdomínios da Membrana/metabolismo , Modelos Biológicos , Receptores de IgE/metabolismo , Quinases da Família src/metabolismo , Animais , Cálcio/metabolismo , Membrana Celular/metabolismo , Simulação por Computador , Haptenos/metabolismo , Peptídeos e Proteínas de Sinalização Intracelular/metabolismo , Leucemia Basofílica Aguda/patologia , Lipoilação , Mastócitos/patologia , Microdomínios da Membrana/patologia , Mutação/genética , Fosforilação , Proteínas Tirosina Quinases/metabolismo , Ratos , Transdução de Sinais , Quinase Syk , Células Tumorais Cultivadas , Tirosina/metabolismo , Quinases da Família src/genética
7.
PLoS Comput Biol ; 7(10): e1002192, 2011 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22022247

RESUMO

Numerous signaling proteins use multivalent binding to increase the specificity and affinity of their interactions within the cell. Enhancement arises because the effective binding constant for multivalent binding is larger than the binding constants for each individual interaction. We seek to gain both qualitative and quantitative understanding of the multivalent interactions of an adaptor protein, growth factor receptor bound protein-2 (Grb2), containing two SH3 domains interacting with the nucleotide exchange factor son-of-sevenless 1 (Sos1) containing multiple polyproline motifs separated by flexible unstructured regions. Grb2 mediates the recruitment of Sos1 from the cytosol to the plasma membrane where it activates Ras by inducing the exchange of GDP for GTP. First, using a combination of evolutionary information and binding energy calculations, we predict an additional polyproline motif in Sos1 that binds to the SH3 domains of Grb2. This gives rise to a total of five polyproline motifs in Sos1 that are capable of binding to the two SH3 domains of Grb2. Then, using a hybrid method combining molecular dynamics simulations and polymer models, we estimate the enhancement in local concentration of a polyproline motif on Sos1 near an unbound SH3 domain of Grb2 when its other SH3 domain is bound to a different polyproline motif on Sos1. We show that the local concentration of the Sos1 motifs that a Grb2 SH3 domain experiences is approximately 1000 times greater than the cellular concentration of Sos1. Finally, we calculate the intramolecular equilibrium constants for the crosslinking of Grb2 on Sos1 and use thermodynamic modeling to calculate the stoichiometry. With these equilibrium constants, we are able to predict the distribution of complexes that form at physiological concentrations. We believe this is the first systematic analysis that combines sequence, structure, and thermodynamic analyses to determine the stoichiometry of the complexes that are dominant in the cellular environment.


Assuntos
Proteína Adaptadora GRB2/metabolismo , Proteína SOS1/metabolismo , Sequência de Aminoácidos , Animais , Proteína Adaptadora GRB2/química , Humanos , Modelos Moleculares , Simulação de Dinâmica Molecular , Dados de Sequência Molecular , Estrutura Molecular , Probabilidade , Ligação Proteica , Proteína SOS1/química , Homologia de Sequência de Aminoácidos
8.
PLoS One ; 6(5): e19701, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21629715

RESUMO

A promising direction in drug development is to exploit the ability of natural killer cells to kill antibody-labeled target cells. Monoclonal antibodies and drugs designed to elicit this effect typically bind cell-surface epitopes that are overexpressed on target cells but also present on other cells. Thus it is important to understand adhesion of cells by antibodies and similar molecules. We present an equilibrium model of such adhesion, incorporating heterogeneity in target cell epitope density, nonspecific adhesion forces, and epitope immobility. We compare with experiments on the adhesion of Jurkat T cells to bilayers containing the relevant natural killer cell receptor, with adhesion mediated by the drug alefacept. We show that a model in which all target cell epitopes are mobile and available is inconsistent with the data, suggesting that more complex mechanisms are at work. We hypothesize that the immobile epitope fraction may change with cell adhesion, and we find that such a model is more consistent with the data, although discrepancies remain. We also quantitatively describe the parameter space in which binding occurs. Our model elaborates substantially on previous work, and our results offer guidance for the refinement of therapeutic immunoadhesins. Furthermore, our comparison with data from Jurkat T cells also points toward mechanisms relating epitope immobility to cell adhesion.


Assuntos
Adesão Celular/fisiologia , Anticorpos Monoclonais/imunologia , Citotoxicidade Celular Dependente de Anticorpos/imunologia , Humanos , Células Jurkat/citologia , Modelos Biológicos , Modelos Teóricos
9.
Mol Biosyst ; 7(10): 2779-95, 2011 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-21647530

RESUMO

Rule-based modeling provides a means to represent cell signaling systems in a way that captures site-specific details of molecular interactions. For rule-based models to be more widely understood and (re)used, conventions for model visualization and annotation are needed. We have developed the concepts of an extended contact map and a model guide for illustrating and annotating rule-based models. An extended contact map represents the scope of a model by providing an illustration of each molecule, molecular component, direct physical interaction, post-translational modification, and enzyme-substrate relationship considered in a model. A map can also illustrate allosteric effects, structural relationships among molecular components, and compartmental locations of molecules. A model guide associates elements of a contact map with annotation and elements of an underlying model, which may be fully or partially specified. A guide can also serve to document the biological knowledge upon which a model is based. We provide examples of a map and guide for a published rule-based model that characterizes early events in IgE receptor (FcεRI) signaling. We also provide examples of how to visualize a variety of processes that are common in cell signaling systems but not considered in the example model, such as ubiquitination. An extended contact map and an associated guide can document knowledge of a cell signaling system in a form that is visual as well as executable. As a tool for model annotation, a map and guide can communicate the content of a model clearly and with precision, even for large models.


Assuntos
Modelos Teóricos , Regulação Alostérica , Transdução de Sinais
10.
IET Syst Biol ; 4(6): 334-47, 2010 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21073233

RESUMO

Many receptor systems initiate cell signaling through ligand-induced receptor aggregation. For bivalent ligands binding to mono- or bivalent receptors, a plot of the equilibrium concentration of receptors in aggregates against the log of the free ligand concentration, the cross-linking curve, is symmetric and bell shaped. However, steady state cellular responses initiated through receptor cross-linking may have a different dependence on ligand concentration than the aggregated receptors that initiate and maintain these responses. The authors illustrate by considering the activation of the protein kinase Syk that rapidly occurs after high affinity receptors for IgE, FcεRI, are aggregated on the surface of mast cells and basophils. Using a mathematical model of Syk activation the authors investigate two effects, one straightforward and one less so, that result in Syk activation not qualitatively following the cross-linking curve. Model predictions show that if the mechanism by which Syk is fully activated involves the transphosphorylation of Syk by Syk, then Syk activation curves can be either bell shaped or double humped, depending on the cellular concentrations of Syk and FcεRI. The model also predicts that the Syk activation curve can be non-symmetric with respect to the ligand concentration. The cell can exhibit differential Syk activation at two different ligand concentrations that produce identical distributions of receptor aggregates that form and dissociate at the same rates. The authors discuss how, even though it is only receptor aggregates that trigger responses, differences in total ligand concentration can lead to subtle kinetic effects that yield qualitative differences in the levels of Syk activation.


Assuntos
Comunicação Celular/fisiologia , Peptídeos e Proteínas de Sinalização Intracelular/metabolismo , Mastócitos/metabolismo , Modelos Biológicos , Proteínas Tirosina Quinases/metabolismo , Receptores de IgE/metabolismo , Algoritmos , Biologia Computacional , Simulação por Computador , Humanos , Imunoglobulina E/metabolismo , Ligação Proteica , Estrutura Terciária de Proteína , Proteínas Tirosina Quinases/biossíntese , Receptores de IgE/biossíntese , Transdução de Sinais/fisiologia , Quinase Syk
11.
J Immunol ; 185(6): 3268-76, 2010 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-20733205

RESUMO

The term serial engagement was introduced to describe the ability of a single peptide, bound to a MHC molecule, to sequentially interact with TCRs within the contact region between a T cell and an APC. In addition to ligands on surfaces, soluble multivalent ligands can serially engage cell surface receptors with sites on the ligand, binding and dissociating from receptors many times before all ligand sites become free and the ligand leaves the surface. To evaluate the role of serial engagement in Syk activation, we use a detailed mathematical model of the initial signaling cascade that is triggered when FcepsilonRI is aggregated on mast cells by multivalent Ags. Although serial engagement is not required for mast cell signaling, it can influence the recruitment of Syk to the receptor and subsequent Syk phosphorylation. Simulating the response of mast cells to ligands that serially engage receptors at different rates shows that increasing the rate of serial engagement by increasing the rate of dissociation of the ligand-receptor bond decreases Syk phosphorylation. Increasing serial engagement by increasing the rate at which receptors are cross-linked (for example by increasing the forward rate constant for cross-linking or increasing the valence of the ligand) increases Syk phosphorylation. When serial engagement enhances Syk phosphorylation, it does so by partially reversing the effects of kinetic proofreading. Serial engagement rapidly returns receptors that have dissociated from aggregates to new aggregates before the receptors have fully returned to their basal state.


Assuntos
Imunoglobulina E/metabolismo , Fragmentos de Imunoglobulinas/metabolismo , Peptídeos e Proteínas de Sinalização Intracelular/metabolismo , Mastócitos/enzimologia , Mastócitos/imunologia , Modelos Imunológicos , Proteínas Tirosina Quinases/metabolismo , Receptores de IgE/metabolismo , Regulação para Cima/imunologia , Animais , Sítios de Ligação de Anticorpos/genética , Linhagem Celular Tumoral , Ativação Enzimática/genética , Ativação Enzimática/imunologia , Imunoglobulina E/química , Imunoglobulina E/fisiologia , Fragmentos de Imunoglobulinas/química , Fragmentos de Imunoglobulinas/fisiologia , Leucemia Basofílica Aguda/enzimologia , Leucemia Basofílica Aguda/imunologia , Ligantes , Ativação Linfocitária/genética , Ativação Linfocitária/imunologia , Mastócitos/metabolismo , Valor Preditivo dos Testes , Transporte Proteico/genética , Transporte Proteico/imunologia , Ratos , Receptores de IgE/química , Receptores de IgE/fisiologia , Transdução de Sinais/genética , Transdução de Sinais/imunologia , Quinase Syk , Regulação para Cima/genética
12.
Biophys J ; 96(7): 2604-23, 2009 Apr 08.
Artigo em Inglês | MEDLINE | ID: mdl-19348745

RESUMO

Ligand-induced receptor aggregation is a well-known mechanism for initiating intracellular signals but oligomerization of distal signaling molecules may also be required for signal propagation. Formation of complexes containing oligomers of the transmembrane adaptor protein, linker for the activation of T cells (LAT), has been identified as critical in mast cell and T cell activation mediated by immune response receptors. Cross-linking of LAT arises from the formation of a 2:1 complex between the adaptor Grb2 and the nucleotide exchange factor SOS1, which bridges two LAT molecules through the interaction of the Grb2 SH2 domain with a phosphotyrosine on LAT. We model this oligomerization and find that the valence of LAT for Grb2, which ranges from zero to three, is critical in determining the nature and extent of aggregation. A dramatic rise in oligomerization can occur when the valence switches from two to three. For valence three, an equilibrium theory predicts the possibility of forming a gel-like phase. This prediction is confirmed by stochastic simulations, which make additional predictions about the size of the gel and the kinetics of LAT oligomerization. We discuss the model predictions in light of recent experiments on RBL-2H3 and Jurkat E6.1 cells and suggest that the gel phase has been observed in activated mast cells.


Assuntos
Proteínas Adaptadoras de Transdução de Sinal/química , Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Reagentes de Ligações Cruzadas/farmacologia , Citosol/metabolismo , Proteína Adaptadora GRB2/metabolismo , Proteínas de Membrana/química , Proteínas de Membrana/metabolismo , Modelos Moleculares , Proteína SOS1/metabolismo , Proteínas Adaptadoras de Transdução de Sinal/antagonistas & inibidores , Linhagem Celular , Citosol/efeitos dos fármacos , Proteína Adaptadora GRB2/química , Humanos , Cinética , Proteínas de Membrana/antagonistas & inibidores , Ligação Proteica/efeitos dos fármacos , Multimerização Proteica , Estrutura Quaternária de Proteína , Proteína SOS1/química , Processos Estocásticos
13.
Cell Immunol ; 255(1-2): 8-16, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-18845299

RESUMO

The accessory protein MD2 has been implicated in LPS-mediated activation of the innate immune system by functioning as a co-receptor with TLR4 for LPS binding at the cell surface. Epithelial cells that play a role in primary immune response, such as in the lung or gut, often express TLR4, but are dependent on circulating soluble MD2 (sMD2) to bind TLR4 to assemble the functional receptor. In this study, we show that sMD2 incubation with HEK293 epithelial cells transfected with TLR4 increases the cell surface levels of TLR4 in the absence of LPS. Dose response studies reveal that a threshold sMD2 concentration (approximately 450 nM) stimulates maximal TLR4 levels on the cell surface, whereas higher concentrations of sMD2 (approximately 1800 nM) reduce these enhanced TLR4 levels. We show evidence that MD2 multimer formation is increased at these higher concentrations of sMD2 and that addition of LPS to sMD2-stimulated cells masks the enhanced TLR4 cell surface levels, most likely due to the LPS-induced downregulation of TLR4 by endocytosis following receptor stimulation. All together, these results support a model in which sMD2 binds to TLR4 and increases TLR4 levels at the cell surface by preventing TLR4 turnover through the endocytic pathway. Thus, sMD2 may prime epithelial cells for enhanced immunoresponsive function prior to LPS exposure.


Assuntos
Membrana Celular/metabolismo , Células Epiteliais/metabolismo , Antígeno 96 de Linfócito/imunologia , Receptor 4 Toll-Like/imunologia , Animais , Linhagem Celular , Células Epiteliais/citologia , Humanos , Lipopolissacarídeos/imunologia , Antígeno 96 de Linfócito/genética , Receptor 4 Toll-Like/genética
14.
Adv Exp Med Biol ; 640: 82-94, 2008.
Artigo em Inglês | MEDLINE | ID: mdl-19065786

RESUMO

Kinetic proofreading is an intrinsic property of the cell signaling process. It arises as a consequence of the multiple interactions that occur after a ligand triggers a receptor to initiate a ignaling cascade and it ensures that false signals do not propagate to completion. In order for an active signaling complex to form after a ligand binds to a cell surface receptor, a sequence of binding and phosphorylation events must occur that are rapidly reversed if the ligand dissociates from the receptor. This gives rise to a mechanism by which cells can discriminate among ligands that bind to the same receptor but form ligand-receptor complexes with different lifetimes. We review experiments designed to test for kinetic proofreading and models that exhibit kinetic proofreading.


Assuntos
Modelos Imunológicos , Animais , Humanos , Cinética , Ativação Linfocitária/imunologia , Receptores de IgE/imunologia , Transdução de Sinais/imunologia , Linfócitos T/imunologia
15.
Biochemistry ; 47(3): 1017-30, 2008 Jan 22.
Artigo em Inglês | MEDLINE | ID: mdl-18154361

RESUMO

A series of synthetic ligands consisting of poly(ethylene glycol) (PEG), capped on one or both ends with the hapten 2,4-dinitrophenyl (DNP), were previously shown to be potent inhibitors of cellular activation in RBL mast cells stimulated by a multivalent antigen [Baird, E. J., Holowka, D., Coates, G. W., and Baird, B. (2003) Biochemistry 42, 12739-12748]. In this study, we systematically investigated the effect of increasing length of the PEG scaffold on the binding of these monovalent and bivalent ligands to anti-DNP IgE in solution. Our analysis reveals evidence for an energetically favorable interaction between two monovalent ligands bound to the same receptor, when the PEG molecular mass exceeds approximately 5 kDa. Additionally, for ligands with much higher molecular masses (>10 kDa PEG), the binding of a single ligand apparently leads to a steric exclusion of the second binding site by the bulky PEG scaffold. These results are further corroborated by data from an alternate fluorescence-based assay that we developed to quantify the capacity of these ligands to displace a small hapten bound to IgE. This new assay monitors the displacement of a small, receptor-bound hapten by a competitive monovalent ligand and thus quantifies the competitive inhibition offered by a monovalent ligand. We also show that, for bivalent ligands, inhibitory capacity is correlated with the capacity to form effective intramolecular cross-links with IgE.


Assuntos
2,4-Dinitrofenol/química , Imunoglobulina E/química , Modelos Químicos , Polietilenoglicóis/química , 2,4-Dinitrofenol/imunologia , 2,4-Dinitrofenol/metabolismo , Algoritmos , Reações Antígeno-Anticorpo , Ligação Competitiva , Fluoresceína-5-Isotiocianato/química , Fluoresceínas/química , Imunoglobulina E/imunologia , Imunoglobulina E/metabolismo , Ligantes , Peso Molecular , Polietilenoglicóis/metabolismo , Ligação Proteica , Espectrometria de Fluorescência
16.
J Biol Chem ; 282(48): 34748-57, 2007 Nov 30.
Artigo em Inglês | MEDLINE | ID: mdl-17911103

RESUMO

Alefacept is a chimeric protein combining CD58 immunoglobulin-like domain 1 with human IgG1 Fc. Alefacept mediates adhesion by bridging CD2 on T cells to activating Fc receptors on effector cells, but the equilibrium binding parameters have not been determined. Alefacept mediated T cell killing by NK cells and adhesion between CD2- and CD16-expressing cells at an optimum concentration of 100 nM. We introduce novel measurements with supported planer bilayers, from which key two-dimensional and three-dimensional parameters can be determined by data fitting. Alefacept competitively inhibited cell bilayer adhesion mediated by the CD2-CD58 interaction. Alefacept mediated maximal adhesion of CD2(+) T cells to CD16B, an Fc receptor, in planar bilayers at 500 nM. A mechanistic model for alefacept-mediated cell-bilayer adhesion allowed fitting of the data and determination of two-dimensional binding parameters. These included the density of bonds in the adhesion area, which grew to maintain a consistent average bond density of 200 molecules/microm(2) and two-dimensional association constants of 3.1 and 630 microm(2) for bivalently and monovalently bound forms of alefacept, respectively. The maximum number of CD16 bound and the fit value of 4,350 CD2 per cell are much lower than the 40,000 CD2 per cell measured with anti-CD2 Fab. These results suggest that additional information is needed to correctly predict Alefacept-mediated bridge formation.


Assuntos
Antígenos CD2/biossíntese , Antígenos CD58/química , Receptores de IgG/biossíntese , Proteínas Recombinantes de Fusão/química , Alefacept , Animais , Células CHO , Adesão Celular , Cricetinae , Cricetulus , Fármacos Dermatológicos/química , Fármacos Dermatológicos/farmacologia , Relação Dose-Resposta a Droga , Humanos , Células Jurkat , Cinética , Bicamadas Lipídicas/química , Ligação Proteica , Receptores Fc/química , Receptores de IgG/química , Proteínas Recombinantes de Fusão/farmacologia , Linfócitos T/metabolismo
17.
Semin Immunol ; 19(4): 216-24, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17398114

RESUMO

A recent workshop discussed the recognition of multiple distinct ligands by individual T cell and B cell receptors and the implications of this discovery for lymphocyte biology. The workshop recommends general use of the term polyspecificity because it emphasizes two fundamental aspects, the inherent specificity of receptor recognition and the ability to recognize multiple ligands. Many different examples of polyspecificity and the structural mechanisms were discussed, and the group concluded that polyspecificity is a general, inherent feature of TCR and antibody recognition. This review summarizes the relevance of polyspecificity for lymphocyte development, activation and disease processes.


Assuntos
Apresentação de Antígeno/imunologia , Linfócitos B/imunologia , Ativação Linfocitária/imunologia , Receptores de Antígenos de Linfócitos T/imunologia , Linfócitos T/imunologia , Animais , Linfócitos T CD8-Positivos/imunologia , Humanos , Ligantes , Camundongos , Peptídeos/imunologia
18.
J Immunol ; 178(6): 3530-5, 2007 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-17339448

RESUMO

Cells may discriminate among ligands with different dwell times for receptor binding through a mechanism called kinetic proofreading in which the formation of an activated receptor complex requires a progression of events that is aborted if the ligand dissociates before completion. This mechanism explains how, at equivalent levels of receptor occupancy, a rapidly dissociating ligand can be less effective than a more slowly dissociating analog at generating distal cellular responses. Simple mathematical models predict that kinetic proofreading is limited to the initial complex; once the signal passes to second messengers, the dwell time no longer regulates the signal. This suggests that an assay for kinetic proofreading might be used to determine which activation events occur within the initial signaling complex. In signaling through the high affinity IgE receptor FcepsilonRI, the transmembrane adaptor called linker for activation of T cells (LAT) is thought to nucleate a distinct secondary complex. Experiments in which the concentrations of two ligands with different dwell times are adjusted to equalize the level of LAT phosphorylation in rat basophilic leukemia 2H3 cells show that Erk2 phosphorylation, intracellular Ca(2+), and degranulation exhibit kinetic proofreading downstream of LAT phosphorylation. These results suggest that ligand-bound FcepsilonRI and LAT form a complex that is required for effective signal transmission.


Assuntos
Proteínas Adaptadoras de Transdução de Sinal/metabolismo , Sinalização do Cálcio/fisiologia , Proteínas de Membrana/metabolismo , Modelos Biológicos , Fosfoproteínas/metabolismo , Processamento de Proteína Pós-Traducional/fisiologia , Receptores de IgE/metabolismo , Animais , Linhagem Celular Tumoral , Cinética , Ligantes , Proteína Quinase 1 Ativada por Mitógeno/metabolismo , Fosforilação , Ratos
19.
Bull Math Biol ; 68(5): 1125-50, 2006 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-16804651

RESUMO

Rate constants that characterize the kinetics of binding and dissociation between biomolecules carry fundamental information about the biological processes these molecules are involved in. An instrument that is widely used to determine these rate constants is the Biacore. In a Biacore experiment, one of the reactants, which we will call the receptor, is immobilized on a sensor chip. During the binding phase of the experiment the other reactant flows past the chip. After binding, buffer alone is introduced into the flow cell and dissociation is monitored. Often surface-based binding assays are influenced by the transport of the reactant in solution, complicating the determination of the chemical rate constants from the observed binding kinetics. We propose a new way to determine the dissociation rate constant by adding soluble receptor during dissociation. The method is tested first on simulated data and then on Biacore experiments where the lac repressor protein binds and dissociates from a stretch of double stranded DNA containing the lac repressor binding site. With this method we find a dissociation rate constant k(d)=0.075 +/- 0.005s(-1), a value that is faster than previously obtained from Biacore experiments. In developing our method to analyze these experiments we obtain an expression for the transport limited rate constant for a Biacore experiment when soluble receptor is present during dissociation.


Assuntos
Técnicas Biossensoriais , Modelos Biológicos , Cinética , Ligantes , Receptores de Superfície Celular/metabolismo , Proteínas Repressoras/metabolismo , Soluções
20.
Biosystems ; 83(2-3): 136-51, 2006.
Artigo em Inglês | MEDLINE | ID: mdl-16233948

RESUMO

We consider a model of early events in signaling by the epidermal growth factor (EGF) receptor (EGFR). The model includes EGF, EGFR, the adapter proteins Grb2 and Shc, and the guanine nucleotide exchange factor Sos, which is activated through EGF-induced formation of EGFR-Grb2-Sos and EGFR-Shc-Grb2-Sos assemblies at the plasma membrane. The protein interactions involved in signaling can potentially generate a diversity of protein complexes and phosphoforms; however, this diversity has been largely ignored in models of EGFR signaling. Here, we develop a model that accounts more fully for potential molecular diversity by specifying rules for protein interactions and then using these rules to generate a reaction network that includes all chemical species and reactions implied by the protein interactions. We obtain a model that predicts the dynamics of 356 molecular species, which are connected through 3749 unidirectional reactions. This network model is compared with a previously developed model that includes only 18 chemical species but incorporates the same scope of protein interactions. The predictions of this model are reproduced by the network model, which also yields new predictions. For example, the network model predicts distinct temporal patterns of autophosphorylation for different tyrosine residues of EGFR. A comparison of the two models suggests experiments that could lead to mechanistic insights about competition among adapter proteins for EGFR binding sites and the role of EGFR monomers in signal transduction.


Assuntos
Fator de Crescimento Epidérmico/metabolismo , Receptores ErbB/metabolismo , Hepatócitos/metabolismo , Fígado/metabolismo , Modelos Biológicos , Transdução de Sinais/fisiologia , Animais , Técnicas de Química Combinatória , Simulação por Computador , Regulação da Expressão Gênica/fisiologia , Complexos Multienzimáticos/metabolismo , Ratos
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