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1.
J Clin Invest ; 2024 Jul 04.
Artigo em Inglês | MEDLINE | ID: mdl-38963700

RESUMO

BACKGROUND: Antibiotic-Refractory Lyme Arthritis (ARLA) involves a complex interplay of T cell responses targeting Borrelia burgdorferi antigens succeeding towards autoantigens by epitope spreading. However, the precise molecular mechanisms driving the pathogenic T cell response in ARLA remain unclear. Our aim was to elucidate the molecular program of disease-specific Th cells. METHODS: Using flow cytometry, high-throughput T cell receptor (TCR) sequencing and scRNA-seq of CD4+ Th cells isolated from the joints of European ARLA patients, we aimed at inferring antigen specificity through unbiased analysis of TCR repertoire patterns, identifying surrogate markers for disease-specific TCRs and connecting TCR specificity to transcriptional patterns. RESULTS: PD-1hiHLA-DR+CD4+ effector T cells were clonally expanded within the inflamed joints and persisted throughout disease course. Among these cells, we identified a distinct TCRß motif restricted to HLA-DRB1*11 or *13 alleles. These alleles, being underrepresented in North American ARLA patients, were unexpectedly prevalent in our European cohort. The identified TCRß motif served as surrogate marker for a convergent TCR response specific to ARLA, distinguishing it from other rheumatic diseases. In the scRNA-seq dataset, the TCRß motif particularly mapped to peripheral T helper (TPH) cells displaying signs of sustained proliferation, continuous TCR signaling, and expressing CXCL13 and IFN-γ. CONCLUSION: By inferring disease-specific TCRs from synovial T cells we identified a convergent TCR response in the joints of ARLA patients that continuously fueled the expansion of TPH cells expressing a pathogenic cytokine effector program. The identified TCRs will aid in uncovering the major antigen targets of the maladaptive immune response. FUNDING: Supported by the German Research Foundation (DFG) MO 2160/4-1; the Federal Ministry of Education and Research (BMBF; Advanced Clinician Scientist-Program INTERACT; 01EO2108) embedded in the Interdisciplinary Center for Clinical Research (IZKF) of the University Hospital Würzburg; the German Center for Infection Research (DZIF; Clinical Leave Program; TI07.001_007) and the Interdisciplinary Center for Clinical Research (IZKF) Würzburg (Clinician Scientist Program, Z-2/CSP-30).

2.
Cortex ; 175: 41-53, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38703715

RESUMO

Visual search is speeded when a target is repeatedly presented in an invariant scene context of nontargets (contextual cueing), demonstrating observers' capability for using statistical long-term memory (LTM) to make predictions about upcoming sensory events, thus improving attentional orienting. In the current study, we investigated whether expectations arising from individual, learned environmental structures can encompass multiple target locations. We recorded event-related potentials (ERPs) while participants performed a contextual cueing search task with repeated and non-repeated spatial item configurations. Notably, a given search display could be associated with either a single target location (standard contextual cueing) or two possible target locations. Our result showed that LTM-guided attention was always limited to only one target position in single- but also in the dual-target displays, as evidenced by expedited reaction times (RTs) and enhanced N1pc and N2pc deflections contralateral to one ("dominant") target of up to two repeating target locations. This contrasts with the processing of non-learned ("minor") target positions (in dual-target displays), which revealed slowed RTs alongside an initial N1pc "misguidance" signal that then vanished in the subsequent N2pc. This RT slowing was accompanied by enhanced N200 and N400 waveforms over fronto-central electrodes, suggesting that control mechanisms regulate the competition between dominant and minor targets. Our study thus reveals a dissociation in processing dominant versus minor targets: While LTM templates guide attention to dominant targets, minor targets necessitate control processes to overcome the automatic bias towards previously learned, dominant target locations.


Assuntos
Atenção , Sinais (Psicologia) , Eletroencefalografia , Potenciais Evocados , Tempo de Reação , Humanos , Atenção/fisiologia , Masculino , Feminino , Potenciais Evocados/fisiologia , Tempo de Reação/fisiologia , Adulto Jovem , Adulto , Eletroencefalografia/métodos , Percepção Visual/fisiologia , Estimulação Luminosa/métodos , Orientação/fisiologia , Memória de Longo Prazo/fisiologia
3.
J Autoimmun ; 147: 103246, 2024 May 23.
Artigo em Inglês | MEDLINE | ID: mdl-38788540

RESUMO

OBJECTIVES: Systemic sclerosis (SSc) is a multiorgan disease with a 10-year mortality rate of up to 50 %. B cell-depleting therapy with rituximab (RTX) appears effective in SSc treatment, but data from randomized controlled trials (RCTs) are lacking, and the frequency and dosage of RTX in SSc have no consensus. We aimed to evaluate the long-term efficacy and safety of quarterly RTX administration in SSc. METHODS: This study retrospectively analyzed 40 patients with SSC treated with RTX twice within 14 days every 3 months from 2010 to 2020. The patients fulfilled the LeRoy and the American College of Rheumatology/European League Against Rheumatism Criteria for SSc. Modified Rodnan skin score (mRSS), lung function test results, and serum immunoglobulin (IgG, IgA, and IgM) concentrations were analyzed. RESULTS: A total of 40 patients with SSc received RTX over a median time of 3.9 years (range: 1-10 years). The median mRSS (baseline: 19, 24 months: 16, p < 0.001) demonstrated a significant improvement, and the predicted forced vital capacity was stable. No new or unexpected safety signals, especially regarding treatment-related infectious adverse events, were observed. Immunoglobulin concentrations were within normal range, and specific antibodies to pneumococcal polysaccharides were preserved despite long-term B cell-depleting therapy. None of the patients died during the observation period of up to 10 years. CONCLUSION: SSc was effectively and safely treated with low-dose RTX quarterly. RCTs are warranted to validate the advantage of continuous B cell depletion by quarterly low-dose RTX administration compared to other treatment intervals.

4.
J Theor Biol ; 587: 111824, 2024 Jun 21.
Artigo em Inglês | MEDLINE | ID: mdl-38604595

RESUMO

The human gut microbiota relies on complex carbohydrates (glycans) for energy and growth, primarily dietary fiber and host-derived mucins. We introduce a mathematical model of a glycan generalist and a mucin specialist in a two-compartment chemostat model of the human colon. Our objective is to characterize the influence of dietary fiber and mucin supply on the abundance of mucin-degrading species within the gut ecosystem. Current mathematical gut reactor models that include the enzymatic degradation of glycans do not differentiate between glycan types and their degraders. The model we present distinguishes between a generalist that can degrade both dietary fiber and mucin, and a specialist species that can only degrade mucin. The integrity of the colonic mucus barrier is essential for overall human health and well-being, with the mucin specialist Akkermanisa muciniphila being associated with a healthy mucus layer. Competition, particularly between the specialist and generalists like Bacteroides thetaiotaomicron, may lead to mucus layer erosion, especially during periods of dietary fiber deprivation. Our model treats the colon as a gut reactor system, dividing it into two compartments that represent the lumen and the mucus of the gut, resulting in a complex system of ordinary differential equations with a large and uncertain parameter space. To understand the influence of model parameters on long-term behavior, we employ a random forest classifier, a supervised machine learning method. Additionally, a variance-based sensitivity analysis is utilized to determine the sensitivity of steady-state values to changes in model parameter inputs. By constructing this model, we can investigate the underlying mechanisms that control gut microbiota composition and function, free from confounding factors.


Assuntos
Fibras na Dieta , Microbioma Gastrointestinal , Modelos Biológicos , Mucinas , Muco , Mucinas/metabolismo , Fibras na Dieta/metabolismo , Humanos , Microbioma Gastrointestinal/fisiologia , Muco/metabolismo , Colo/metabolismo , Colo/microbiologia , Polissacarídeos/metabolismo
5.
Psychon Bull Rev ; 2024 Apr 30.
Artigo em Inglês | MEDLINE | ID: mdl-38689187

RESUMO

Visual search is facilitated when targets are repeatedly encountered at a fixed position relative to an invariant distractor layout, compared to random distractor arrangements. However, standard investigations of this contextual-facilitation effect employ fixed distractor layouts that predict a constant target location, which does not always reflect real-world situations where the target location may vary relative to an invariant distractor arrangement. To explore the mechanisms involved in contextual learning, we employed a training-test procedure, introducing not only the standard full-repeated displays with fixed target-distractor locations but also distractor-repeated displays in which the distractor arrangement remained unchanged but the target locations varied. During the training phase, participants encountered three types of display: full-repeated, distractor-repeated, and random arrangements. The results revealed full-repeated displays to engender larger performance gains than distractor-repeated displays, relative to the random-display baseline. In the test phase, the gains were substantially reduced when full-repeated displays changed into distractor-repeated displays, while the transition from distractor-repeated to full-repeated displays failed to yield additional gains. We take this pattern to indicate that contextual learning can improve performance with both predictive and non-predictive (repeated) contexts, employing distinct mechanisms: contextual guidance and context suppression, respectively. We consider how these mechanisms might be implemented (neuro-)computationally.

6.
Psychophysiology ; 61(7): e14557, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38459638

RESUMO

When memorizing an integrated object such as a Kanizsa figure, the completion of parts into a coherent whole is attained by grouping processes which render a whole-object representation in visual working memory (VWM). The present study measured event-related potentials (ERPs) and oscillatory amplitudes to track these processes of encoding and representing multiple features of an object in VWM. To this end, a change detection task was performed, which required observers to memorize both the orientations and colors of six "pacman" items while inducing configurations of the pacmen that systematically varied in terms of their grouping strength. The results revealed an effect of object configuration in VWM despite physically constant visual input: change detection for both orientation and color features was more accurate with increased grouping strength. At the electrophysiological level, the lateralized ERPs and alpha activity mirrored this behavioral pattern. Perception of the orientation features gave rise to the encoding of a grouped object as reflected by the amplitudes of the Ppc. The grouped object structure, in turn, modulated attention to both orientation and color features as indicated by the enhanced N1pc and N2pc. Finally, during item retention, the representation of individual objects and the concurrent allocation of attention to these memorized objects were modulated by grouping, as reflected by variations in the CDA amplitude and a concurrent lateralized alpha suppression, respectively. These results indicate that memorizing multiple features of grouped, to-be-integrated objects involves multiple, sequential stages of processing, providing support for a hierarchical model of object representations in VWM.


Assuntos
Ritmo alfa , Eletroencefalografia , Potenciais Evocados , Memória de Curto Prazo , Humanos , Memória de Curto Prazo/fisiologia , Masculino , Feminino , Adulto Jovem , Ritmo alfa/fisiologia , Potenciais Evocados/fisiologia , Adulto , Percepção Visual/fisiologia , Atenção/fisiologia , Estimulação Luminosa , Reconhecimento Visual de Modelos/fisiologia
7.
J Autoimmun ; 144: 103183, 2024 04.
Artigo em Inglês | MEDLINE | ID: mdl-38401466

RESUMO

Chronic nonbacterial osteomyelitis (CNO), an autoinflammatory bone disease primarily affecting children, can cause pain, hyperostosis and fractures, affecting quality-of-life and psychomotor development. This study investigated CNO-associated variants in P2RX7, encoding for the ATP-dependent trans-membrane K+ channel P2X7, and their effects on NLRP3 inflammasome assembly. Whole exome sequencing in two related transgenerational CNO patients, and target sequencing of P2RX7 in a large CNO cohort (N = 190) were conducted. Results were compared with publicly available datasets and regional controls (N = 1873). Findings were integrated with demographic and clinical data. Patient-derived monocytes and genetically modified THP-1 cells were used to investigate potassium flux, inflammasome assembly, pyroptosis, and cytokine release. Rare presumably damaging P2RX7 variants were identified in two related CNO patients. Targeted P2RX7 sequencing identified 62 CNO patients with rare variants (32.4%), 11 of which (5.8%) carried presumably damaging variants (MAF <1%, SIFT "deleterious", Polyphen "probably damaging", CADD >20). This compared to 83 of 1873 controls (4.4%), 36 with rare and presumably damaging variants (1.9%). Across the CNO cohort, rare variants unique to one (Median: 42 versus 3.7) or more (≤11 patients) participants were over-represented when compared to 190 randomly selected controls. Patients with rare damaging variants more frequently experienced gastrointestinal symptoms and lymphadenopathy while having less spinal, joint and skin involvement (psoriasis). Monocyte-derived macrophages from patients, and genetically modified THP-1-derived macrophages reconstituted with CNO-associated P2RX7 variants exhibited altered potassium flux, inflammasome assembly, IL-1ß and IL-18 release, and pyroptosis. Damaging P2RX7 variants occur in a small subset of CNO patients, and rare P2RX7 variants may represent a CNO risk factor. Observations argue for inflammasome inhibition and/or cytokine blockade and may allow future patient stratification and individualized care.


Assuntos
Inflamassomos , Osteomielite , Humanos , Citocinas , Inflamassomos/genética , Inflamassomos/metabolismo , Osteomielite/genética , Potássio , Piroptose , Receptores Purinérgicos P2X7/genética
8.
Artigo em Inglês | MEDLINE | ID: mdl-38177944

RESUMO

Hypothesis-driven research rests on clearly articulated scientific theories. The building blocks for communicating these theories are scientific terms. Obviously, communication - and thus, scientific progress - is hampered if the meaning of these terms varies idiosyncratically across (sub)fields and even across individual researchers within the same subfield. We have formed an international group of experts representing various theoretical stances with the goal to homogenize the use of the terms that are most relevant to fundamental research on visual distraction in visual search. Our discussions revealed striking heterogeneity and we had to invest much time and effort to increase our mutual understanding of each other's use of central terms, which turned out to be strongly related to our respective theoretical positions. We present the outcomes of these discussions in a glossary and provide some context in several essays. Specifically, we explicate how central terms are used in the distraction literature and consensually sharpen their definitions in order to enable communication across theoretical standpoints. Where applicable, we also explain how the respective constructs can be measured. We believe that this novel type of adversarial collaboration can serve as a model for other fields of psychological research that strive to build a solid groundwork for theorizing and communicating by establishing a common language. For the field of visual distraction, the present paper should facilitate communication across theoretical standpoints and may serve as an introduction and reference text for newcomers.

9.
Psychon Bull Rev ; 31(1): 148-155, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-37434045

RESUMO

Visual search for a target is faster when the spatial layout of distractors is repeatedly encountered, illustrating that statistical learning of contextual invariances facilitates attentional guidance (contextual cueing; Chun & Jiang, 1998, Cognitive Psychology, 36, 28-71). While contextual learning is usually relatively efficient, relocating the target to an unexpected location (within an otherwise unchanged search layout) typically abolishes contextual cueing and the benefits deriving from invariant contexts recover only slowly with extensive training (Zellin et al., 2014, Psychonomic Bulletin & Review, 21(4), 1073-1079). However, a recent study by Peterson et al. (2022, Attention, Perception, & Psychophysics, 84(2), 474-489) in fact reported rather strong adaptation of spatial contextual memories following target position changes, thus contrasting with prior work. Peterson et al. argued that previous studies may have been underpowered to detect a reliable recovery of contextual cueing after the change. However, their experiments also used a specific display design that frequently presented the targets at the same locations, which might reduce the predictability of the contextual cues thereby facilitating its flexible relearning (irrespective of statistical power). The current study was a (high-powered) replication of Peterson et al., taking into account both statistical power and target overlap in context-memory adaptation. We found reliable contextual cueing for the initial target location irrespective of whether the targets shared their location across multiple displays, or not. However, contextual adaptation following a target relocation event occurred only when target locations were shared. This suggests that cue predictability modulates contextual adaptation, over and above a possible (yet negligible) influence of statistical power.


Assuntos
Atenção , Sinais (Psicologia) , Humanos , Rememoração Mental , Memória Espacial , Psicofísica , Tempo de Reação
10.
Microb Biotechnol ; 17(1): e14312, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37435812

RESUMO

Pseudomonas species have become promising cell factories for the production of natural products due to their inherent robustness. Although these bacteria have naturally evolved strategies to cope with different kinds of stress, many biotechnological applications benefit from engineering of optimised chassis strains with specially adapted tolerance traits. Here, we explored the formation of outer membrane vesicles (OMV) of Pseudomonas putida KT2440. We found OMV production to correlate with the recombinant production of a natural compound with versatile beneficial properties, the tripyrrole prodigiosin. Further, several P. putida genes were identified, whose up- or down-regulated expression allowed controlling OMV formation. Finally, genetically triggering vesiculation in production strains of the different alkaloids prodigiosin, violacein, and phenazine-1-carboxylic acid, as well as the carotenoid zeaxanthin, resulted in up to three-fold increased product yields. Consequently, our findings suggest that the construction of robust strains by genetic manipulation of OMV formation might be developed into a useful tool which may contribute to improving limited biotechnological applications.


Assuntos
Produtos Biológicos , Pseudomonas putida , Pseudomonas putida/genética , Pseudomonas putida/metabolismo , Prodigiosina/metabolismo , Produtos Biológicos/metabolismo , Biotecnologia , Zeaxantinas/metabolismo
11.
Atten Percept Psychophys ; 86(2): 439-456, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-37407797

RESUMO

The present study investigated whether the integration of separate parts into a whole-object representation varies with the amount of available attentional resources. To this end, two experiments were performed, which required observers to maintain central fixation while searching in peripheral vision for a target among various distractor configurations. The target could either be a "grouped" whole-object Kanizsa figure, or an "ungrouped" configuration of identical figural parts, but which do not support object completion processes to the same extent. In the experiments, accuracies and changes in pupil size were assessed, with the latter reflecting a marker of the covert allocation of attention in the periphery. Experiment 1 revealed a performance benefit for grouped (relative to ungrouped) targets, which increased with decreasing distance from fixation. By contrast, search for ungrouped targets was comparably poor in accuracy without revealing any eccentricity-dependent variation. Moreover, measures of pupillary dilation mirrored this eccentricity-dependent advantage in localizing grouped targets. Next, in Experiment 2, an additional attention-demanding foveal task was introduced in order to further reduce the availability of attentional resources for the peripheral detection task. This additional task hampered performance overall, alongside with corresponding pupil size changes. However, there was still a substantial benefit for grouped over ungrouped targets in both the behavioral and the pupillometric data. This shows that perceptual grouping scales with the allocation of attention even when only residual attentional resources are available to trigger the representation of a complete (target) object, thus illustrating that object completion operates in the "near absence" of attention.


Assuntos
Atenção , Percepção Visual , Humanos , Estimulação Luminosa
12.
J Exp Psychol Learn Mem Cogn ; 50(5): 699-711, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-37917510

RESUMO

Visual search is faster when a fixed target location is paired with a spatially invariant (vs. randomly changing) distractor configuration, thus indicating that repeated contexts are learned, thereby guiding attention to the target (contextual cueing [CC]). Evidence for memory-guided attention has also been revealed with electrophysiological (electroencephalographic [EEG]) recordings, starting with an enhanced early posterior negativity (N1pc), which signals a preattentive bias toward the target, and, subsequently, attentional and postselective components, such as the posterior contralateral negativity (PCN) and contralateral delay activity (CDA), respectively. Despite effective learning, relearning of previously acquired contexts is inflexible: The CC benefits disappear when the target is relocated to a new position within an otherwise invariant context and corresponding EEG correlates are diminished. The present study tested whether global statistical properties that induce predictions going beyond the immediate invariant layout can facilitate contextual relearning. Global statistical regularities were implemented by presenting repeated and nonrepeated displays in separate streaks (mini blocks) of trials in the relocation phase, with individual displays being presented in a fixed and thus predictable order. Our results revealed a significant CC effect (and an associated modulation of the N1pc, PCN, and CDA components) during initial learning. Critically, the global statistical regularities in the relocation phase also resulted in a reliable CC effect, thus revealing effective relearning with predictive streaks. Moreover, this relearning was reflected in an enhanced PCN amplitude for repeated relative to nonrepeated contexts. Temporally ordered contexts may thus adapt memory-based guidance of attention, particularly the allocation of covert attention in the visual display. (PsycInfo Database Record (c) 2024 APA, all rights reserved).


Assuntos
Sinais (Psicologia) , Aprendizagem , Humanos , Aprendizagem/fisiologia , Rememoração Mental , Adaptação Fisiológica , Tempo de Reação/fisiologia
13.
Psychol Res ; 88(2): 417-437, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-37819500

RESUMO

Some studies have suggested that emotion-associated features might influence attentional capture. However, demonstrating valence-dependent distractor interference has proven challenging, possibly due to the neglect of individuals' color-valence preferences in standard, averaged reaction-time (RT) measures. To address this, we investigated valence-driven attentional-capture using an association phase in which emotionally neutral vs. positive-feedback photographs were paired with two alternative target colors, red vs. green. This was followed by a test phase requiring participants to search for a pop-out shape target in the presence or absence of an emotion-associated color. In Experiments 1 and 2, this color could only appear in a distractor, while in Experiment 3, it appeared in the target. Analyzing the standard, averaged RT measures, we found no significant valence association or valence-modulated attentional capture. However, correlational analyses revealed a positive relationship between individual participants' color-valence preference during the association phase and their valence-based effect during the test phase. Moreover, most individuals favored red over green in the association phase, leading to marked color-related asymmetries in the average measures. Crucially, the presence of the valence-preferred color anywhere in the test display facilitated RTs. This effect persisted even when the color appeared in one of the distractors (Experiments 1 and 2), at variance with this distractor capturing attention. These findings suggest that task-irrelevant valence-preferred color signals were registered pre-attentively and boosted performance, likely by raising the general (non-spatial) alertness level. However, these signals were likely kept out of attentional-priority computation to prevent inadvertent attentional capture.


Assuntos
Atenção , Emoções , Humanos , Tempo de Reação , Percepção de Cores
14.
Sci Total Environ ; 912: 168382, 2024 Feb 20.
Artigo em Inglês | MEDLINE | ID: mdl-37963537

RESUMO

Rhamnolipids are biosurfactants produced by bacteria belonging to the Pseudomonas genus. They are discussed to complex heavy metal cations stronger than cations of Fe, Ca, Mg. It is therefore suggested to employ rhamnolipids in phytoextraction where their addition to soil should result in preferential complexation of heavy metals that can be taken up by plants, thus enabling rapid and ecological clean-up of contaminated soil. In order to test this concept, we evaluated the rhamnolipid-mediated phytoextraction of heavy metal from soil collected from the vicinity of a copper smelter. The following aspects were investigated: i) selectivity of rhamnolipids towards Cu, Zn, Pb, Cd and Fe during soil washing; ii) phytoextraction efficiency of each ion with respect to the effective concentration of rhamnolipids; iii) possible phytotoxic effects; iv) effect of micro-sized polystyrene amendment. The experiments evaluated soil washing efficiency, BCR (Community Bureau of Reference) sequential extraction to determine the impact of rhamnolipids on the mobility of metal ions, phytoextraction with maize (Zea mays L.) and phytotoxic effects based on dry matter, chlorophyll fluorescence and content. The obtained results indicated that rhamnolipids lack desired selectivity towards heavy metal ions as Fe was complexed more efficiently by 80 % of the available rhamnolipids compared to priority pollutants like Zn, Cu, Pb, which were complexed by only 20 % of the tested rhamnolipids. With increased concentration of rhamnolipids, the soil washing efficiency increased and shifted in favour of Fe, reaching values of approx. 469 mg for Fe and only 118 mg in total of all tested heavy metals. Phytoextraction also favoured the accumulation of Fe, while Cd was not removed from the soil even at the highest applied rhamnolipid concentrations. Considering the selectivity of rhamnolipids and the costs associated with their production, our results suggest the need to search for other alternative (bio)surfactants with better selectivity and lower price.


Assuntos
Glicolipídeos , Metais Pesados , Poluentes do Solo , Cobre/análise , Solo , Cádmio/análise , Chumbo , Poluentes do Solo/análise , Metais Pesados/análise , Zinco/análise , Cátions , Biodegradação Ambiental
15.
Ecotoxicol Environ Saf ; 267: 115656, 2023 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-37944463

RESUMO

Although it is known that microplastics (MPs) in soils cause a threat to this complex environment, the actual effects of MPs on soil microorganisms and their catabolic activities, particularly with the biodegradation of herbicides, remain unclear. Hence, the objective of this study was to investigate the effects of a simultaneous presence of metolachlor and low-density polyethylene (LDPE) microplastics on growth inhibition and adaptive responses of Trichoderma harzianum in soil microcosms. Using ergosterol content as an indicator of fungal biomass, it was observed that MPs alone had a marginal inhibitory effect on the growth of the fungus, whereas MET exhibited a dose-dependent inhibitory effect on T. harzianum. However, the presence of MPs did not influence the fungal transforming activity toward the herbicide. Conversely, analysis of lipid profiles in the presence of MPs and herbicides revealed a reduction in the overall fluidity of phospholipid fatty acids, primarily attributed to an increase in lysophospholipids. The activities of six extracellular enzymes in the soil, measured using methylumbelliferone-linked substrates, were significantly enhanced in the presence of MET. These findings contribute to a broader understanding of the alterations in fungal activity in soil resulting from the influence of MPs and MET.


Assuntos
Herbicidas , Hypocreales , Microplásticos , Plásticos , Polietileno , Herbicidas/toxicidade , Solo
16.
J Chem Phys ; 159(9)2023 Sep 07.
Artigo em Inglês | MEDLINE | ID: mdl-37671962

RESUMO

Computing accurate yet efficient approximations to the solutions of the electronic Schrödinger equation has been a paramount challenge of computational chemistry for decades. Quantum Monte Carlo methods are a promising avenue of development as their core algorithm exhibits a number of favorable properties: it is highly parallel and scales favorably with the considered system size, with an accuracy that is limited only by the choice of the wave function Ansatz. The recently introduced machine-learned parametrizations of quantum Monte Carlo Ansätze rely on the efficiency of neural networks as universal function approximators to achieve state of the art accuracy on a variety of molecular systems. With interest in the field growing rapidly, there is a clear need for easy to use, modular, and extendable software libraries facilitating the development and adoption of this new class of methods. In this contribution, the DeepQMC program package is introduced, in an attempt to provide a common framework for future investigations by unifying many of the currently available deep-learning quantum Monte Carlo architectures. Furthermore, the manuscript provides a brief introduction to the methodology of variational quantum Monte Carlo in real space, highlights some technical challenges of optimizing neural network wave functions, and presents example black-box applications of the program package. We thereby intend to make this novel field accessible to a broader class of practitioners from both the quantum chemistry and the machine learning communities.

17.
Bioresour Technol ; 388: 129741, 2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-37717703

RESUMO

Polyketides from (hydroxy)benzoates are an interesting group of plant polyphenolic compounds, whose biotechnological production is so far underrepresented due to their challenging heterologous biosynthesis. Efficient heterologous production of 2,4,6-tri- and 2,3',4,6-tetrahydroxybenzophenone, 3,5-dihydroxybiphenyl, and 4-hydroxycoumarin by whole-cell biocatalysis in combination with in situ product extraction with an organic solvent was demonstrated. Production was highly dependent on the used CoA ligase and polyketide synthase type III. Therefore, different combinations of polyketide synthases and benzoate-CoA ligases were evaluated for their biosynthesis performance in the solvent-tolerant Pseudomonas taiwanensis VLB120. A solvent screening yielded 2-undecanone as biocompatible, extraction-efficient solvent with good phase separation. In aqueous-organic two-phase cultivations, this solvent extraction circumvents product instability in the aqueous cultivation medium, and it increases yields by reducing inhibitory effects. Complete de novo synthesis from glucose of all (hydroxy)benzoate-derived polyketides was achieved in two-phase cultivations with metabolically engineered strains. Additionally, mutasynthesis was applied to obtain fluorinated benzophenone derivatives.


Assuntos
Policetídeos , Benzoatos , Plantas , Pseudomonas , Solventes
18.
Chemosphere ; 341: 139927, 2023 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-37633614

RESUMO

Recently, much attention has been focused on the application of the Ionic Liquids (ILs) with herbicidal activity in agriculture. It has been suggested that through the appropriate selection of cations and anions, one can adjust the properties of ILs, particularly the hydrophobicity, solubility, bioavailability, toxicity. In practical agricultural conditions, it will be beneficial to reduce the mobility of herbicidal anions, such as the commonly applied 2,4-dichlorophenoxyacetic acid [2,4-D] in the soil. Furthermore, microplastics are becoming increasingly prevalent in the soil, potentially stimulating herbicidal sorption. Therefore, we investigated whether cations in ILs influence the mobility of anions in OECD soil supplemented with polystyrene microplastic (PS). For this purpose, we used the 2,4-D based ILs consisting of: a hydrophilic choline cation [Chol][2,4-D] and a hydrophobic choline cation with a C12chain [C12Chol][2,4-D]. Characterization of selected micropolystyrene was carried out using the BET sorption-desorption isotherm, particle size distribution and changes in soil sorption parameters such as soil sorption capacity and cation exchange capacity. Based on the batch sorption experiment, the effect of microplastic on the sorption of individual cations and anions in soil contaminated with micropolystyrene was evaluated. The results obtained indicate that the introduction of a 1-10% (w/w) PS resulted in an 18-23% increase of the soil sorption capacity. However, the sorption of both ILs' cations increased only by 3-5%. No sorption of the [2,4-D] anion was noted. This suggests that cations and anions forming ILs, behave independently of each other in the environment. The results indicate the fact that ILs upon introduction into the environment are not a new type of emerging contaminant, but rather a typical mixture of ions. It is worth noting that when analyzing the behavior of ILs in the environment, it is necessary to follow the fate of both cations and anions.


Assuntos
Herbicidas , Líquidos Iônicos , Microplásticos , Plásticos , Líquidos Iônicos/química , Poliestirenos , Solo/química , Ânions , Herbicidas/química , Cátions/química , Colina , Ácido 2,4-Diclorofenoxiacético
19.
Psychol Sci ; 34(10): 1087-1100, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37650877

RESUMO

Visual working memory (VWM) is limited in capacity, though memorizing meaningful objects may refine this limitation. However, meaningful and meaningless stimuli typically differ perceptually, and objects' associations with meaning are usually already established outside the laboratory, potentially confounding experimental findings. Here, in two experiments with young adults (N = 45 and N = 20), we controlled for these influences by having observers actively learn associations of (for them) initially meaningless stimuli: Chinese characters, half of which were consistently paired with pictures of animals or everyday objects in a learning phase. This phase was preceded and followed by a (pre- and postlearning) change-detection task to assess VWM performance. The results revealed that short-term retention was enhanced after learning, particularly for meaning-associated characters, although participants did not quite reach the accuracy level attained by native Chinese observers (young adults, N = 20). These results thus provide direct experimental evidence that participants' VWM of objects is boosted by them having acquired a long-term-memory association with meaning.

20.
J Cogn ; 6(1): 38, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37426059

RESUMO

In a healthy scientific community, theories influence each other and promising ideas are embraced by competing theoretical camps. We are therefore pleased that Theeuwes (2023) now agrees with core points of our theoretical position (Liesefeld et al., 2021; Liesefeld & Müller, 2020), most notably, the central role target salience plays for interference by salient distractors and the conditions that facilitate clump scanning. The present commentary traces the development of Theeuwes' theorizing and carves out remaining discrepancies, most notably the conjecture of two qualitatively distinct search modes. Such a dichotomy is embraced by us, but decidedly rejected by Theeuwes. Accordingly, we selectively review some evidence in favor of search modes that appear crucial to the current debate.

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