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Tracking a time-varying indefinite number of objects in a video sequence over time remains a challenge despite recent advances in the field. Most existing approaches are not able to properly handle multi-object tracking challenges such as occlusion, in part because they ignore long-term temporal information. To address these shortcomings, we present MO3TR: a truly end-to-end Transformer-based online multi-object tracking (MOT) framework that learns to handle occlusions, track initiation and termination without the need for an explicit data association module or any heuristics. MO3TR encodes object interactions into long-term temporal embeddings using a combination of spatial and temporal Transformers, and recursively uses the information jointly with the input data to estimate the states of all tracked objects over time. The spatial attention mechanism enables our framework to learn implicit representations between all the objects and the objects to the measurements, while the temporal attention mechanism focuses on specific parts of past information, allowing our approach to resolve occlusions over multiple frames. Our experiments demonstrate the potential of this new approach, achieving results on par with or better than the current state-of-the-art on multiple MOT metrics for several popular multi-object tracking benchmarks.
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The hydration structure of nitroxide radicals in aqueous solutions is elucidated by advanced 17 O hyperfine (hf) spectroscopy with support of quantum chemical calculations and MD simulations. A piperidine and a pyrrolidine-based nitroxide radical are compared and show clear differences in the preferred directionality of H-bond formation. We demonstrate that these scenarios are best represented in 17 O hf spectra, where in-plane coordination over σ ${\sigma }$ -type H-bonding leads to little spin density transfer on the water oxygen and small hf couplings, whereas π ${{\rm \pi }}$ -type perpendicular coordination generates much larger hf couplings. Quantitative analysis of the spectra based on MD simulations and DFT predicted hf parameters is consistent with a distribution of close solvating water molecules, in which directionality is influenced by subtle steric effects of the ring and the methyl group substituents.
Assuntos
Óxidos de Nitrogênio , Água , Espectroscopia de Ressonância de Spin Eletrônica , Óxidos de Nitrogênio/química , Soluções , Radicais LivresRESUMO
Pulsed 19F ENDOR spectroscopy provides a selective method for measuring angstrom to nanometer distances in structural biology. Here, the performance of 19F ENDOR at fields of 3.4 T and 9.4 T is compared using model compounds containing one to three 19F atoms. CF3 groups are included in two compounds, for which the possible occurrence of uniaxial rotation might affect the distance distribution. At 9.4 T, pronounced asymmetric features are observed in many of the presented 19F ENDOR spectra. Data analysis by spectral simulations shows that these features arise from the chemical shift anisotropy (CSA) of the 19F nuclei. This asymmetry is also observed at 3.4 T, albeit to a much smaller extent, confirming the physical origin of the effect. The CSA parameters are well consistent with DFT predicted values and can be extracted from simulation of the experimental data in favourable cases, thereby providing additional information about the geometrical and electronic structure of the spin system. The feasibility of resolving the CSA at 9.4 T provides important information for the interpretation of line broadening in ENDOR spectra also at lower fields, which is relevant for developing methods to extract distance distributions from 19F ENDOR spectra.
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Espectroscopia de Ressonância de Spin Eletrônica , Anisotropia , Simulação por ComputadorRESUMO
Electron-nuclear double resonance (ENDOR) measures the hyperfine interaction of magnetic nuclei with paramagnetic centers and is hence a powerful tool for spectroscopic investigations extending from biophysics to material science. Progress in microwave technology and the recent availability of commercial electron paramagnetic resonance (EPR) spectrometers up to an electron Larmor frequency of 263 GHz now open the opportunity for a more quantitative spectral analysis. Using representative spectra of a prototype amino acid radical in a biologically relevant enzyme, the [Formula: see text] in Escherichia coli ribonucleotide reductase, we developed a statistical model for ENDOR data and conducted statistical inference on the spectra including uncertainty estimation and hypothesis testing. Our approach in conjunction with 1H/2H isotopic labeling of [Formula: see text] in the protein unambiguously established new unexpected spectral contributions. Density functional theory (DFT) calculations and ENDOR spectral simulations indicated that these features result from the beta-methylene hyperfine coupling and are caused by a distribution of molecular conformations, likely important for the biological function of this essential radical. The results demonstrate that model-based statistical analysis in combination with state-of-the-art spectroscopy accesses information hitherto beyond standard approaches.
Assuntos
Estatística como Assunto , Aminoácidos/química , Simulação por Computador , Espectroscopia de Ressonância de Spin Eletrônica , Escherichia coli/enzimologia , Subunidades Proteicas/química , Ribonucleotídeo Redutases/químicaRESUMO
Reported are single crystal SQUID and single crystal high-frequency/high-field EPR data of a trinuclear complex with a rare six-coordinate coordination sphere of a DyIII center coupled to two terminal six-coordinate NiII ions. The analysis of the single crystal spectroscopic parameters allows for an accurate description of the ground state wavefunction. The experimental analysis is supplemented by the analysis of the paramagnetic NMR spectra, allowing for a thorough description of the DyIII center. The experimental data are interpreted on the basis of an ab initio ligand field analysis, and the computed parameters are in good agreement with the experimental observations. This supports the quality of the theoretical approach based on a pseudo-spin Hamiltonian for the electronic ground state. Further support emerges from the ab initio ligand field theory based analysis of a structurally very similar system that, in contrast to the complex reported here, shows single molecule magnetic properties, and this is in agreement with the quantum-chemical prediction and analysis.
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We report a large variation in liquid DNP performance of up to a factor of about five in coupling factor among organic radicals commonly used as polarizing agents. A comparative study of 1H and 13C DNP in model systems shows the impact of the spin density distribution and accessibility of the radical site by the target molecule.
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Combination of three radical anionic Ph-BIAN ligands (Ph-BIAN=bis-(phenylimino)-acenaphthenequinone) with lanthanoid ions leads to a series of homoleptic, six-coordinate complexes of the type Ln(Ph-BIAN)3 . Magnetic coupling data were measured by paramagnetic solution NMR spectroscopy. Combining 1 Hâ NMR with 2 Hâ NMR of partially deuterated compounds allowed a detailed study of the magnetic susceptibility anisotropies over a large temperature range. The observed chemical shifts were separated into ligand- and metal-centered contributions by comparison with the Y analogue (diamagnetic at the metal). The metal-centered contributions of the complexes with the paramagnetic ions could then be separated into pseudocontact and Fermi contact shifts. The latter is large within the Ph-BIAN scaffold, which shows that magnetic coupling is significant between the lanthanide ion and the radical ligand. Pseudocontact shifts were further correlated to structural data obtained from X-ray diffraction experiments. Ligand-field parameters were determined by fitting the temperature dependence of the observed magnetic susceptibility anisotropies. The electronic structure determined by this approach shows, that the Er and Tm analogues are candidates for single molecule magnets (SMM). These results demonstrate the possibilities for the application of NMR spectroscopy in investigations of paramagnetic systems in general and single molecule magnets in particular.
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We present and discuss the performance of 1H electron-nuclear double resonance (ENDOR) at 263â¯GHz/9.4â¯T by employing a prototype, commercial quasi optical spectrometer. Basic instrumental features of the setup are described alongside a comprehensive characterization of the new ENDOR probe head design. The performance of three different ENDOR pulse sequences (Davies, Mims and CP-ENDOR) is evaluated using the 1H BDPA radical. A key feature of 263â¯GHz spectroscopy - the increase in orientation selectivity in comparison with 94â¯GHz experiments - is discussed in detail. For this purpose, the resolution of 1H ENDOR spectra at 263â¯GHz is verified using a representative protein sample containing approximately 15 picomoles of a tyrosyl radical. Davies ENDOR spectra recorded at 5â¯K reveal previously obscured spectral features, which are interpreted by spectral simulations aided by DFT calculations. Our analysis shows that seven internal proton couplings are detectable for this specific radical if sufficient orientation selectivity is achieved. The results prove the fidelity of 263â¯GHz experiments in reporting orientation-selected 1H ENDOR spectra and demonstrate that new significant information can be uncovered in complex molecular systems, owing to the enhanced resolution combined with high absolute sensitivity and no compromise in acquisition time.
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A method for the experimental determination of ligand-field (LF) energy splitting in mononuclear lanthanide complexes, based purely on variable-temperature NMR spectroscopy, was developed. The application of this method in an isostructural series of anionic lanthanide bis(cyclooctatetraenide) double-decker compounds bearing large rigid substituents is demonstrated. Using the three-nuclei plot approach devised by Reilley, the isostructurality of the compound series and the identical orientation of the magnetic main axis of all Ln3+ ions in the series Tb3+ to Tm3+ are demonstrated. Measurement of the 2H NMR spectra of partially deuterated analogues of the complexes permitted determination of the axial magnetic susceptibility anisotropies χax for all five ions in the temperature range from 185 to 335 K. For this purpose, analysis of the hyperfine shifts was combined with structural models derived from density functional theory calculations. In a final step, the temperature dependence of the χax values was used for determination of the three axial LF parameters, adapting a method employed previously for phthalocyanine-based systems. The temperature dependence dictated by the LF parameters determined by this NMR-based approach is compared to the results of recently published ab initio calculations of the system, indicating reasonable agreement of both methods. For all ions except Dy3+, the NMR method determines the same mJ ground state as the calculations and the order and energies of the excited states match well. However, the sign of the magnetic anisotropy of the dysprosium complex in the temperature range evaluated here is not correctly predicted by the published calculations but can be described accurately by the NMR approach. This shows that our experimental method for determination of the LF parameters is an ideal complementation to other theoretical and experimental methods.
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Reported are the syntheses, structures and magnetic properties, also by NMR spectroscopy in solution, of a series of 13 linear trinuclear 3d-4f compounds with a lanthanide(iii) surrounded by two NiII ions, NiLnIII, where the central LnIII is hexacoordinate. For three of the crystal structures, an additional H2O molecule is coordinated to the central LnIII ion, leading to a monocapped trigonal prismatic structure. However, NMR spectroscopy indicates that in solution, these complexes also have a hexacoordinate LnIII center. The solution magnetic anisotropies, determined by NMR spectroscopy, indicate that the axial components of the anisotropies are relatively small and that the DyIII derivative might therefore not exhibit single molecule magnetism. The axial anisotropies determined by NMR spectroscopy are in good agreement with the expectations based on the distorted trigonal prismatic ligand field.
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Reduction of hydroxy-functionalised carbaboranyl carboxylic acids by organolithium reagents yields the corresponding tertiary alcohols. This is in contrast to exo-polyhedral C-C bond cleavage of unsubstituted carbaboranyl carboxylic acids upon reaction with lithium organyls. The proposed dimeric contact ion pairs may also explain the formation of tertiary alcohols instead of the expected ketones.
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Sulfenyl chlorides RSCl (R = p-C(6)H(4)OMe, Ph, p-C(6)H(4)NO(2), CN or 2-C(5)H(4)N) react with 7,8-nido-C(2)B(9)H(12)(-) with asymmetric substitution on the pentagonal C(2)B(3) face to give 9-RS-7,8-nido-C(2)B(9)H(11)(-) (R = p-C(6)H(4)OMe (3), Ph (4), p-C(6)H(4)NO(2) (5), CN (6)) and the zwitterion 9-(S-2-C(5)H(4)NH)-7,8-nido-C(2)B(9)H(11) (7), respectively, in high yield, while tBuSCl did not react and S(2)Cl(2) led to decomposition. Further reaction of 5-7 with iodine gave the corresponding iodo derivatives NMe(4) [9-I-11-RS-7,8-nido-C(2)B(9)H(10)] (R = p-C(6)H(4)NO(2) (8), CN (9)) and the zwitterion 9-I-11-(S-2-C(5)H(4)NH)-7,8-nido-C(2)B(9)H(11) (10), respectively. Compounds 3-10 were fully characterised by (1)H, (11)B, (11)B{(1)H}, (13)C{(1)H} spectroscopy, IR spectroscopy, mass spectrometry and elemental analysis, 3-7 also by (11)B-(11)B{(1)H} COSY NMR spectroscopy and 8-10 by X-ray structure determination.