Global distribution of soil fauna functional groups and their estimated litter consumption across biomes.

Soil invertebrates (i.e., soil fauna) are important drivers of many key processes in soils including soil aggregate formation, water retention, and soil organic matter transformation. Many soil fauna groups directly or indirectly participate in litter consumption. However, the quantity of litter consumed by major faunal groups across biomes remains unknown. To estimate this quantity, we reviewed > 1000 observations from 70 studies that determined the biomass of soil fauna across various biomes and 200 observations from 44 studies on litter consumption by soil fauna. To compare litter consumption with annual litterfall, we analyzed 692 observations from 24 litterfall studies and 183 observations from 28 litter stock studies. The biomass of faunal groups was highest in temperate grasslands and then decreased in the following order: boreal forest > temperate forest > tropical grassland > tundra > tropical forest > Mediterranean ecosystems > desert and semidesert. Tropical grasslands, desert biomes, and Mediterranean ecosystems were dominated by termites. Temperate grasslands were dominated by omnivores, while temperate forests were dominated by earthworms. On average, estimated litter consumption (relative to total litter input) ranged from a low of 14.9% in deserts to a high of 100.4% in temperate grassland. Litter consumption by soil fauna was greater in grasslands than in forests. This is the first study to estimate the effect of different soil fauna groups on litter consumption and related processes at global scale.

Epiphytic Orchid Diversity along an Altitudinal Gradient in Central Nepal.

Epiphytic orchids are common in subtropical forests, but little is known about the factors that determine their diversity. We surveyed two sites (north-facing Phulchowki and south-facing Shivapuri hills), in the sub-tropical forest in the Kathmandu valley, central Nepal. Along five transects per site, spanning an altitudinal gradient of 1525-2606 m a.s.l., we recorded all epiphytic orchids and the host species on which they were growing. The data were analyzed using a generalized linear model (GLM) and redundancy analysis (RDA). Species richness significantly decreased with increasing altitude and was higher in larger hosts and in places with high temperature. Species composition was affected by altitude, distance from the forest edge, host type, and precipitation. This study indicates that the most important factors affecting epiphytic orchid diversity was altitude, even if other factors were associated with patterns in composition. The low-altitude habitats with high species diversity are the best places for epiphytic orchids in this region. The altitudinal species richness and patterns in composition revealed by this study provide a baseline for further studies on epiphytic orchids.

Distribution of Orchids with Different Rooting Systems in the Czech Republic.

Understanding diversity patterns along altitudinal gradients and the effect of global change on abundance, distribution patterns and species survival are of the most discussed topics in biodiversity research. Here, we determined the associations of orchid species richness and the degree of their specialization to specific environmental conditions (expressed by species specialization index) with altitude in six floristic areas in the Czech Republic. We distinguished three basic trends in these relationships: linear, parabolic and cubic. We then determined whether these trends differ between three orchid groups classified by their rooting systems: rhizomatous, intermediate and tuberous. We used distributional data on 69 species and subspecies of terrestrial orchids recorded in the Czech Republic and interpolated them at 100-m intervals along an altitudinal gradient in each floristic area. The trends in both species richness and mean species specialization index differed between the six floristic areas within each of the three orchid groups studied. These patterns are probably strongly influenced by the orography of the country and the distribution of different habitats in the six floristic areas in the Czech Republic. We also found that the most widely distributed orchid group in the Czech Republic are the rhizomatous orchids, followed by intermediate and tuberous ones.

Suitability of Habitats in Nepal for Dactylorhiza hatagirea Now and under Predicted Future Changes in Climate.

Dactylorhiza hatagirea is a terrestrial orchid listed in Appendix II of the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) and classified as threatened by International Union for Conservation of Nature (IUCN). It is endemic to the Hindu-Kush Himalayan region, distributed from Pakistan to China. The main threat to its existence is climate change and the associated change in the distribution of its suitable habitats to higher altitudes due to increasing temperature. It is therefore necessary to determine the habitats that are suitable for its survival and their expected distribution after the predicted changes in climate. To do this, we use Maxent modelling of the data for its 208 locations. We predict its distribution in 2050 and 2070 using four climate change models and two greenhouse gas concentration trajectories. This revealed severe losses of suitable habitat in Nepal, in which, under the worst scenario, there will be a 71-81% reduction the number of suitable locations for D. hatagirea by 2050 and 95-98% by 2070. Under the most favorable scenario, this reduction will be 65-85% by 2070. The intermediate greenhouse gas concentration trajectory surprisingly would result in a greater reduction by 2070 than the worst-case scenario. Our results provide important guidelines that local authorities interested in conserving this species could use to select areas that need to be protected now and in the future.

Aphid colony duration does not limit the abundance of Harmonia axyridis in the mediterranean area.

There is a lot of information on the factors limiting the distributions of species in their native areas, but much less on those limiting potential changes in distributions of species that are currently spreading outside their present range, especially invasive species. However, this information is often quite essential, as it enables the prediction of future spatial distributions and local abundances of invasive species and the potential effect they may have on people and crops. Arising from glasshouse escapes in North America and the Netherlands, the invasive ladybird, Harmonia axyridis (Pallas) (Coleoptera: Coccinellidae), originally from the east Palearctic, has now spread across the whole of North America and most of Europe, both of which caused serious concern. Recent observations show that the spread of H. axyridis towards the equator is limited. For example, it is quite rare in the Mediterranean area and its northward spread in South America is also quite slow, as if there was something limiting its spread towards the equator. European literature indicates it is neither climate, nor the distance of the Mediterranean from the original release location in the Netherlands. Therefore, we hypothesized that it may be biotic factors. In particular, the duration of colonies of prey (colony is the set of individuals in one patch, usually on one plant) that becomes shorter as one approaches the equator. This may lower the fitness of the predator and subsequently lead to low population densities. We test here, whether the duration of aphid colonies is shorter in the Mediterranean area than in Central Europe. Unfortunately, our data does not support this hypothesis. Therefore, the question of what limits the distribution of H. axyridis towards the equator remains to be resolved.

Implications of landscape genetics and connectivity of snow leopard in the Nepalese Himalayas for its conservation.

The snow leopard is one of the most endangered large mammals. Its population, already low, is declining, most likely due to the consequences of human activity, including a reduction in the size and number of suitable habitats. With climate change, habitat loss may escalate, because of an upward shift in the tree line and concomitant loss of the alpine zone, where the snow leopard lives. Migration between suitable areas, therefore, is important because a decline in abundance in these areas may result in inbreeding, fragmentation of populations, reduction in genetic variation due to habitat fragmentation, loss of connectivity, bottlenecks or genetic drift. Here we use our data collected in Nepal to determine the areas suitable for snow leopards, by using habitat suitability maps, and describe the genetic structure of the snow leopard within and between these areas. We also determine the influence of landscape features on the genetic structure of its populations and reveal corridors connecting suitable areas. We conclude that it is necessary to protect these natural corridors to maintain the possibility of snow leopards' migration between suitable areas, which will enable gene flow between the diminishing populations and thus maintain a viable metapopulation of snow leopards.

Pollination Mechanisms are Driving Orchid Distribution in Space.

Understanding the abundance and distribution patterns of species at large spatial scales is one of the goals of biogeography and macroecology, as it helps researchers and authorities in designing conservation measures for endangered species. Orchids, one of the most endangered groups of plants, have a complicated system of pollination mechanisms. Their survival strongly depends on pollination success, which then determines their presence and distribution in space. Here we concentrate on how pollination mechanisms (presence/absence of nectar) are associated with orchid species density and mean niche breadth along an altitudinal gradient in six different phytogeographical regions in the Czech Republic. We found differences between these regions in terms of orchid species numbers and density. The trend (hump-shaped curve) in species density of nectarless and nectariferous orchids were very similar in all phytogeographical regions, peaking between 300-900 m. The trend strongly depends on habitat cover and pollinator availability. In general, the most specialist species of orchids were found from low to middle altitudes. The association of altitude with the richness of orchid flora is much stronger than that with the biogeography. Climate change is a factor that should not be neglected, as it may affect the presence/absence of many species in the future.

Can we learn from the ecology of the Bohemian gentian and save another closely related species of Gentianella?

Bohemian gentian (Gentianella praecox subsp. bohemica) is an endemic taxon that occurs on the Czech Massif and together with the Sturmian gentian (Gentianella obtusifolia subsp. sturmiana) are the only autumnal species of Gentianella with large flowers in central Europe. Both species have declined dramatically in both population size and numbers of populations. The Bohemian gentian rescue programme, which recommended appropriate management measures, was adopted in 2011. Here we study the ecology of this species, results of the rescue programme and explore the possibilities of using the experience resulting from this programme for improving the viability of the second species. Long-term monitoring of populations of the Bohemian gentian has shown that regular mowing or grazing together with careful litter removal and gap creation are necessary for its survival in the current climatic conditions. We found some ecological differences between these two closely related species of Gentianella. However, our empirical experience of the largest population of the Sturmian gentian at a site where it thrives, and general evidence that gaps are crucial for the successful establishment of Gentianella seedlings, indicate that regular mowing or grazing together with careful litter removal and creation of gaps, should also be recommended as in the case of the Bohemian gentian rescue programme. Artificial gaps are especially crucial for successful seedling regeneration in oligotrophic meadows with dense vegetation, where the last Sturmian gentian populations survive.

Diet and prey selection by snow leopards in the Nepalese Himalayas.

Visual attractiveness and rarity often results in large carnivores being adopted as flagship species for stimulating conservation awareness. Their hunting behaviour and prey selection can affect the population dynamics of their prey, which in turn affects the population dynamics of these large carnivores. Therefore, our understanding of their trophic ecology and foraging strategies is important for predicting their population dynamics and consequently for developing effective conservation programs. Here we concentrate on an endangered species of carnivores, the snow leopard, in the Himalayas. Most previous studies on snow leopard diet lack information on prey availability and/or did not genetically check, whether the identification of snow leopard scats is correct, as their scats are similar to those of other carnivores. We studied the prey of snow leopard in three Himalayan regions in Nepal (Sagarmatha National Park (SNP), Lower Mustang (LM) and Upper Manang (UM) in the Annapurna Conservation Area, during winter and summer in 2014-2016. We collected 268 scats along 139.3 km linear transects, of which 122 were genetically confirmed to belong to snow leopard. Their diet was identified by comparing hairs in scats with our reference collection of the hairs of potential prey. We determined prey availability using 32-48 camera-traps and 4,567 trap nights. In the SNP, the most frequent prey in snow leopard faeces was the Himalayan tahr in both winter and summer. In LM and UM, its main prey was blue sheep in winter, but yak and goat in summer. In terms of relative biomass consumed, yak was the main prey everywhere in both seasons. Snow leopard preferred large prey and avoided small prey in summer but not in winter, with regional differences. It preferred domestic to wild prey only in winter, and in SNP. Unlike most other studies carried out in the same area, our study uses genetic methods for identifying the source of the scat. Studies solely based on visual identification of samples may be strongly biased. Diet studies based on frequency of occurrence of prey tend to overestimate the importance of small prey, which may be consumed more often, but contribute less energy than large prey. However, even assessments based on prey biomass are unlikely to be accurate as we do not know whether the actual size of the prey consumed corresponds to the average size used to calculate the biomass eaten. For example, large adults may be too difficult to catch and therefore mostly young animals are consumed, whose weight is much lower. We show that snow leopard consumes a diverse range of prey, which varies both regionally and seasonally. We conclude that in order to conserve snow leopards it is also necessary to conserve its main wild species of prey, which will reduce the incidence of losses of livestock.

Xanthones Content in Swertia multicaulis D. Don from Nepal.

The medicinal plant Swertia multicaulis D. Don was collected in Rasuwa District (Nepal) and the xanthone content of its ethyl acetate extracts was studied. The total amount of xanthones in S. multicaulis determined by HPLC reaches almost 13 g of xanthones per 1 kg of dry matter. The identification of xanthones in S. multicaulis was achieved by a combination of HPLC, LC⁻MS and LC⁻NMR. The final assignment of the individual chemical structures was provided by NMR, supported by preparative HPLC. In eight chromatographic peaks, four major xanthones were identified­1,3-dihydroxy-5,8-dimethoxyxanthone, 1-hydroxy-3,5,8-trimethoxyxanthone, bellidifolin (1,5,8-tri-hydroxy-3-methoxyxanthone), and decussatin (1-hydroxy-3,7,8-trimethoxyxanthone).

Consequences for selected high-elevation butterflies and moths from the spread of Pinus mugo into the alpine zone in the High Sudetes Mountains.

Due to changes in the global climate, isolated alpine sites have become one of the most vulnerable habitats worldwide. The indigenous fauna in these habitats is threatened by an invasive species, dwarf pine (Pinus mugo), which is highly competitive and could be important in determining the composition of the invertebrate community. In this study, the association of species richness and abundance of butterflies with the extent of Pinus mugo cover at individual alpine sites was determined. Butterflies at alpine sites in the High Sudetes Mountains (Mts.) were sampled using Moericke yellow water traps. The results of a Canonical Correspondence Analysis (CCA) indicated that at a local scale the area of alpine habitats is the main limiting factor for native species of alpine butterflies. Butterfly assemblages are associated with distance to the tree-line with the optimum situated in the lower forest zone. In addition the CCA revealed that biotic factors (i.e. Pinus mugo and alpine tundra vegetation) accounted for a significant amount of the variability in species data. Regionally, the CCA identified that the species composition of butterflies and moths is associated with presence and origin of Pinus mugo. Our study provides evidence that the structure of the Lepidopteran fauna that formed during the postglacial period and also the present composition of species assemblages is associated with the presence of Pinus mugo. With global warming, Pinus mugo has the potential to spread further into alpine areas and negatively affect the local species communities.

Source-Sink Colonization as a Possible Strategy of Insects Living in Temporary Habitats.

Continuous colonization and re-colonization is critical for survival of insect species living in temporary habitats. When insect populations in temporary habitats are depleted, some species may escape extinction by surviving in permanent, but less suitable habitats, in which long-term population survival can be maintained only by immigration from other populations. Such situation has been repeatedly described in nature, but conditions when and how this occurs and how important this phenomenon is for insect metapopulation survival are still poorly known, mainly because it is difficult to study experimentally. Therefore, we used a simulation model to investigate, how environmental stochasticity, growth rate and the incidence of dispersal affect the positive effect of permanent but poor ("sink") habitats on the likelihood of metapopulation persistence in a network of high quality but temporary ("source") habitats. This model revealed that permanent habitats substantially increase the probability of metapopulation persistence of insect species with poor dispersal ability if the availability of temporary habitats is spatio-temporally synchronized. Addition of permanent habitats to a system sometimes enabled metapopulation persistence even in cases in which the metapopulation would otherwise go extinct, especially for species with high growth rates. For insect species with low growth rates the probability of a metapopulation persistence strongly depended on the proportions of "source" to "source" and "sink" to "source" dispersal rates.

Habitat suitability models of mountain ungulates: identifying potential areas for conservation.

BACKGROUND: Determining the distribution of species and of suitable habitats is a fundamental part of conservation planning. We used slope and ruggedness of the terrain, forest type and distance to the nearest village to construct habitat suitability maps for three mountain ungulates (barking deer (Muntiacus muntjak), Himalayan goral (Naemorhedus goral) and Himalayan serow (Capricornis thar)) inthe midhills of western Nepal. We used locations of sightings and signs of presence of these mountain ungulates collected during surveys along transect to derive a suitability value for each variable using Jacob's index. A multiplication approach was used to combine environmental variables andproduce a habitat suitability map for each of the three species. An independent dataset was used to evaluate the maps using Boyce's index. This approach provides an overview of the probable distributions of the species in question. RESULTS: We predict that of the total area studied, 57% is suitable for M. muntjak, 67% for N. goral and 41% for C. thar. Although there are suitable habitats for all three species throughout the study area, the availability of high-quality habitats for these species varied considerably. CONCLUSIONS: Suitable habitats for N. goral and C. thar were fragmented and mostly confined to the southern and northern parts of the study area. This study provides important baseline information for conservation biologists concerned with maintaining biodiversity in the midhills of Nepal.

Alien interference: disruption of infochemical networks by invasive insect herbivores.

Insect herbivores trigger various biochemical changes in plants, and as a consequence, affect other organisms that are associated with these plants. Such plant-mediated indirect effects often involve herbivore-induced plant volatiles (HIPVs) that can be used as cues for foraging herbivores and their natural enemies, and are also known to affect pollinator attraction. In tightly co-evolved systems, the different trophic levels are expected to display adaptive response to changes in HIPVs caused by native herbivores. But what if a new herbivore invades such a system? Current literature suggests that exotic herbivores have the potential to affect HIPV production, and that plant responses to novel herbivores are likely to depend on phylogenetic relatedness between the invader and the native species. Here we review the different ways exotic herbivores can disrupt chemically mediated interactions between plants and the key users of HIPVs: herbivores, pollinators, and members of the third (i.e. predators and parasitoids) and fourth (i.e. hyperparasitoids) trophic levels. Current theory on insect invasions needs to consider that disruptive effects of invaders on infochemical networks can have a short-term impact on the population dynamics of native insects and plants, as well as exerting potentially negative consequences for the functioning of native ecosystems.

Effect of human disturbance on the prey of tiger in the Chitwan National Park--implications for park management.

Chitwan National Park is surrounded by large settlements of people who exploit the areas where tigers and their prey occur. In this study, we measured the associations between the abundance of the prey of tiger with habitat, topographic, predator and human disturbance variables, using canonical correspondence analysis. We show that the abundance of hog deer is closely associated with areas of tall grassland and floodplains, while that of other ungulate species is associated with that of forests and short grasslands. Primates were mainly abundant in riverine and mixed forests. Abundances of most species, except hog deer and wild pig, were more closely associated with areas of forests than with open areas, because the latter were mainly occupied by humans and livestock. The presence of the species studied was closely associated with habitat and disturbance variables. Proximity of water holes was more closely associated with the presence of ungulates than primates. There were close associations between human disturbance and abundances of primates and muntjac, possibly because these species are more tolerant and adapted to human disturbance. However, the major prey species of tiger were negatively associated with human disturbance. As a consequence, human disturbance has resulted in a decline in the abundance of tigers and the lack of prey could result in their extinction in the Chitwan NP. Therefore, in terms of the conservation and management of the park, minimizing human disturbance of wildlife habitats and restoration of a buffer zone forest should be the prime objectives.

Nonlinearities lead to qualitative differences in population dynamics of predator-prey systems.

Since typically there are many predators feeding on most herbivores in natural communities, understanding multiple predator effects is critical for both community and applied ecology. Experiments of multiple predator effects on prey populations are extremely demanding, as the number of treatments and the amount of labour associated with these experiments increases exponentially with the number of species in question. Therefore, researchers tend to vary only presence/absence of the species and use only one (supposedly realistic) combination of their numbers in experiments. However, nonlinearities in density dependence, functional responses, interactions between natural enemies etc. are typical for such systems, and nonlinear models of population dynamics generally predict qualitatively different results, if initial absolute densities of the species studied differ, even if their relative densities are maintained. Therefore, testing combinations of natural enemies without varying their densities may not be sufficient. Here we test this prediction experimentally. We show that the population dynamics of a system consisting of 2 natural enemies (aphid predator Adalia bipunctata (L.), and aphid parasitoid, Aphidius colemani Viereck) and their shared prey (peach aphid, Myzus persicae Sulzer) are strongly affected by the absolute initial densities of the species in question. Even if their relative densities are kept constant, the natural enemy species or combination thereof that most effectively suppresses the prey may depend on the absolute initial densities used in the experiment. Future empirical studies of multiple predator - one prey interactions should therefore use a two-dimensional array of initial densities of the studied species. Varying only combinations of natural enemies without varying their densities is not sufficient and can lead to misleading results.

A new low-cost procedure for detecting nucleic acids in low-incidence samples: a case study of detecting spores of Paenibacillus larvae from bee debris.

American foulbrood, because of its virulence and worldwide spread, is currently one of the most dangerous diseases of honey bees. Quick diagnosis of this disease is therefore vitally important. For its successful eradication, however, all the hives in the region must be tested. This is time consuming and costly. Therefore, a fast and sensitive method of detecting American foulbrood is needed. Here we present a method that significantly reduces the number of tests needed by combining batches of samples from different hives. The results of this method were verified by testing each sample. A simulation study was used to compare the efficiency of the new method with testing all the samples and to develop a decision tool for determining when best to use the new method. The method is suitable for testing large numbers of samples (over 100) when the incidence of the disease is low (10% or less).

Timing of dispersal: effect of ants on aphids.

Mutualists can affect many life history traits of their partners, but it is unclear how this translates into population dynamics of the latter. Ant-aphid associations are ideal for studying this question, as ants affect aphids, both positively (e.g., protection against natural enemies) and negatively (e.g., reduction of potential growth rates). The unresolved question is whether these effects, which have been observed at the level of individuals and under controlled environmental conditions, have consequences at the population level. On estimating aerial aphid populations by using weekly suction trap data spanning up to 22 years from different locations in France, we show that in ant-attended aphid species long-distance dispersal occurs significantly later, but that the year-to-year changes in the peak number of migrants are not significantly lower than for non-attended aphids. Host alternation had the same retarding effect on dispersal as ant attendance. We discuss the delay in the timing of dispersal in ant-attended aphids, and potential costs that arise in mutualistic systems.