Reassessment of pore occlusion in some diatom taxa with re-evaluation of Placoneis Mereschkowsky (Bacillariophyceae: Cymbellales) and description of two new genera.

In this article, the history and taxonomy of Placoneis gastrum, the type species of the genus Placoneis, was discussed. We investigated the structure of pore occlusions in Placoneis and related genera. As a result, we propose a new classification for tectulum-like types of pore occlusions. The new classification is congruent with previously-published and newly-constructed phylogenies based on molecular data. Based on the different structures of the pore occlusions, species of Placoneis are transferred to Witkowskia gen. nov. Hence, 168 new combinations are introduced. A new diatom species, with a similar morphology to Placoneis flabellata, was discovered in Bac Kan Province, Vietnam. It is described in this article as Chudaevia densistriata sp. nov. Placoneis flabellata is transferred to Chudaevia gen. nov. We also illustrate Placoneis flabellata herein and compare it to Chudaevia densistriata sp. nov. An unknown diatom, similar to Placoneis coloradensis, was discovered in Chukotka, Russia. It is introduced as Placoneis elinae sp. nov. below. Additionally, we discuss the distribution of some species of Witkowskia gen. nov. and Chudaevia gen. nov.

Cocconeiscrisscrossis sp. nov., a new monoraphid diatom (Bacillariophyta) from southern China.

A novel monoraphid diatom species, Cocconeiscrisscrossis You, Yu, Kociolek & Wang, sp. nov. is examined and described from the Qingyi River and Maolan Nature Reserve of southern China. The morphological description is based on light microscopy and scanning electron microscopy observations and the new species is compared with similar taxa in this genus. The characteristics unique to Cocconeiscrisscrossissp. nov. include its central area extending irregularly to both sides, it having closed valvocopulae with heavily silicified fimbriate margins and poles of the valvocopulae have 'sword-shaped' siliceous extensions. These features differentiate this new species from others in the genus. This new species was found in alkaline waterbodies, including streams, waterfall and ponds. It was usually found as an epiphyte on the stones; however, it was present on other substrates such as mosses.

A new species of genus Crenotia (Bacillariophyta) from Tibet, China.

During the investigation of the freshwater diatoms from Tibet, a monoraphid species was observed from a hot spring near Anduo County, located on a plateau in the central portion of Tibet. This species shares the diagnostic features of Crenotia, such as the valve bent along the transapical axis, striae uniseriate to biseriate from centre to the apices and areolae with special structures located at the end of each stria. We compared the morphological characters of this new species with the others in this genus and show it to be new; it is named Crenotiatibetiasp. nov. This species has small valves with slightly protracted ends with nearly capitate apices, lanceolate axial area, central area unilaterally expanded to the margin, striae uniseriate to biseriate, but, in some valves, the striae are only uniseriate. Areolae are round small to irregular in shape and, at the end of each stria, there is a horseshoe-shaped areola present. Observations of developing valves show all the striae begin biseriate, then they become covered by silica to form uniseriate striae. Comparisons are made amongst the species in this genus and with genera assigned to the Achnanthidiaceae.

Description of five new Luticola D.G.Mann (Bacillariophyta, Diadesmidaceae) species from Indonesia with comments on the morphological boundaries of the genus.

During a survey of the Indonesian diatoms, five Luticola D.G.Mann taxa that could not be identified, based on the available literature were discovered. Based on light microscopy, scanning electron microscope observations and comparisons with similar taxa, all of them are described as new species. All taxa were found on mosses growing on tree trunks and concrete on the islands of Banda Besar and Seram and from spring on Java Island. Luticolainsularissp. nov. is most similar to L.aequatorialis and L.simplex, but it can easily be distinguished from both taxa, based on the lower striae density, the narrower valves and the well-developed silica ridges on the valve face/mantle junction. Luticolabandanensissp. nov. resembles L.frequentissima, but they can be easily distinguished, based on their valve widths and the direction of the grooves located on the distal and proximal raphe endings. Luticolaellipticasp. nov. is most similar to L.sparsipunctata, L.tenuis and L.bryophila. Amongst all the species compared, L.ellipticasp. nov. is the only one with a highly asymmetrical central area, with the isolated pore located on the wider side. Luticolamalukuanasp. nov. shares similarities with L.dismutica and L.areolata, but it has a notably higher stria density. From L.areolata, it can also be separated by the morphology of striae and the lack of ghost areolae in the central area. Luticolapoliporeasp. nov. is unique in the whole genus due to the presence of multiple isolated pores.

Gandhia gen. nov.-A New Diatom Genus with Unusual Morphology Split Off from the Genus Navicula Bory.

A new naviculoid diatom genus, Gandhia gen. nov., was described based on a detailed morphological investigation using light and scanning electron microscopy. Gandhia obtecta (Jüttner and Cox) Kulikovskiy, Glushchenko, Iurmanov, M.Thacker, B.Karthick and Kociolek comb. nov. was previously described as a member of the genus Navicula Bory sensu lato. This species differs from other species in the genus Navicula s.l. by the presence of an internal siliceous lamina covering the alveoli and forming the image of longitudinal lines on either side of the axial area, visible in LM. The presence of this siliceous lamina is similar to laminae in genera such as Pinnularia and Gomphoneis. This unusual morphology is not typical for Navicula sensu stricto, as previously noted by other scientists. Additional investigation of Gandhia obtecta comb. nov. and Gandhia ramosissimoides (H.P. Gandhi) Kulikovskiy, Glushchenko, M.Thacker, B.Karthick and Kociolek comb. nov. from waterbodies of the Western Ghats and the Himalayan region was conducted. Comparison with other species with the same morphological features included two additional species in the genus, namely, Gandhia jakovljevicii (Hustedt) Kulikovskiy, Glushchenko, M.Thacker, B.Karthick, and Kociolek comb. nov. and Gandhia lucida (Pantocsek) Kulikovskiy, Glushchenko, M.Thacker, B.Karthick and Kociolek comb. nov. We discuss the biogeographic patterns of the species, including disjuncts between Europe and Asia.

Is Sellaphora the New Navicula? Cymbosellaphora (Cymbellales), a New Genus Based on Taxa Previously Assigned to Sellaphora.

A new diatom genus Cymbosellaphora Kulikovskiy, Glushchenko, Genkal and Kociolek gen. nov., was described with species Cymbosellaphora vietnamensis Glushchenko, Kulikovskiy and Kociolek sp. nov. C. vietnamensis sp. nov. was described from Vietnam and characterized by the presence of morphological features such as valves with naviculoid symmetry, slight dorsiventrality, the presence of tectula as pore occlusions, uniseriate striae, and a very broad mantle. Four species were transferred to the new genus. These are C. absoluta comb. nov., C. circumborealis comb. nov., C. geisslerae comb. nov., and C. laterostrata comb. nov. Previously, these species were members of genera Navicula Bory, Sellaphora Mereschkowsky, and Naviculadicta Lange-Bertalot. The taxonomic history of these species and genera are discussed. The tectulum is known only from the cymbelloid diatoms, and our new genus is placed within the Cymbellaceae. The presence of a tectulum demonstrates that these species cannot be placed in Sellaphora, as indicated in the literature. The recent proposal to transfer a large number of species with different morphologies to the genus Sellaphora is also discussed. Additionally, we compare pore occlusions with tectula between different genera of the Cymbellaceae with naviculoid symmetry.

The Genus Pinnularia Ehrenberg (Bacillariophyta) from the Transbaikal Area (Russia, Siberia): Description of Seven New Species on the Basis of Morphology and Molecular Data with Discussion of the Phylogenetic Position of Caloneis.

Seven Pinnularia species from the Transbaikal area, Russia, are described as new for science. These are P. baicalgenkalii, P. baicalflexuosa, P. microfrauenbergiana, P. pergrunowii, P. siberiosinistra, P. baicalodivergens, and P. baicalislandica. All species are described by original LM and SEM microphotographs and molecular phylogeny. We provide comparisons between the taxa and document variability in the features found in the species. The number of Pinnularia species in the Transbaikal area is the largest number of species of the genus anywhere in the world.

New and Interesting Taxa from the Diatom Genus Gomphonema Ehrenberg in Shallow, Nearshore Sites on the Eastern Coast of Lake Baikal.

During this investigation, sixteen species from the genus Gomphonema were found in a shallow bay (near Oimur, Kabansky District) located on the eastern shore of Lake Baikal. Eleven of these taxa have been described previously. Five species are described as new to science. We provide ecological information about these Gomphonema species, including their distribution within and outside Lake Baikal, and compare and contrast the new taxa with morphologically similar congeners. The diversity of morphologies present in Lake Baikal among the Gomphonema species suggests there has been both in-lake speciation as well as the introduction of various groups of species. The idea that Lake Baikal may support a high number of endemics by their partitioning niches based on depth is supported by the different groups of gomphonemoid diatoms present.

Molecular and Morphological Investigations of Two Giant Diatom Cymbella Species from the Transbaikal Area (Russia, Siberia) with Comments on Their Distributions.

For the first time, a giant diatom species of the genus Cymbella from Lake Baikal was studied using molecular methods. Molecular and morphological investigations allowed to us to described one new species, Cymbella baicalaspera Glushchenko, Kulikovskiy and Kociolek sp. nov. This species is both morphologically similar and phylogenetically close to a second giant Cymbella species that we investigated here, identified by us as Cymbella himalaspera Jüttner and Van de Vijver in Jüttner et al. 2010. This species was first described from Nepal on the basis of a morphological investigation. Small morphological differences exist between the type population and specimens from Lake Baikal, but otherwise the two are identical. These very interesting results show that some Baikalian diatoms can be distributed more widely and are not only endemic to this ancient lake. Similarity between Cymbella baicalaspera sp. nov. and Cymbella himalaspera on the basis of both morphological features and their close phylogenetic relationships suggested by molecular data indicate they are sister species and an example of sympatric speciation. These results also suggest an early development of a species flock. This species group warrants additional research in terms of. their diversification and biogeography.

Planoplatessa gen. nov.-A New, Neglected Monoraphid Diatom Genus with a Cavum.

A new monoraphid diatom genus, Planoplatessa gen. nov., is described on the basis of a detailed morphological investigation using light and scanning electron microscopy. We transferred Achnanthes joursacensis Héribaud, a species described from fossil deposits in France, to our new genus. We investigated material from Mongolia from Recent populations. This taxon is known from fossils to Recent across the Holarctic. Achnanthes joursacensis was previously transferred to the genera Planothidium and Platessa, but the morphology of A. joursacensis does not share all morphological features with these two genera. We discuss important morphological features for the delimitation of monoraphid genera based on careful morphological and molecular investigations we presented previously. Planoplatessa gen. nov. as a genus is characterized by having uniseriate striae on both the raphe and the rapheless valves, a cavum in rapheless valves only, and straight distal raphe ends on the valve face.

Description of the Soil Diatom Sellaphora terrestris sp. nov. (Bacillariophyceae, Sellaphoraceae) from Vietnam, with Remarks on the Phylogeny and Taxonomy of Sellaphora and Systematic Position of Microcostatus.

In material isolated from soils of Cát Tiên National Park, we isolated four strains that were assigned to the genus Sellaphora. Identification was carried out on the basis of morphological and molecular studies. We proposed a new species named Sellaphora terrestris sp. nov. An evolutionary distance matrix, based on the 18S rDNA gene including the V4 domain, showed the new species shared 94.1-97.2% similarities with other Sellaphora sequences. The new species is morphologically similar to species previously identified as representatives of the genus Microcostatus.

Two new species of Navicula (Bacillariophyta) from Southeast Asia.

We present light and scanning electron microscopical observations on two new species of Navicula Bory sensu stricto from Southeast Asia. Naviculawinoniformis Chudaev, Glushchenko, Kulikovskiy & Kociolek, sp. nov. differs from taxa with similar outline and size by the combination of simple drop-like external raphe endings deflected to the primary valve side, presence of well-developed external longitudinal grooves and relatively low lineolae density. Naviculasparsilineolata Chudaev, Glushchenko, Kulikovskiy & Kociolek, sp. nov. can be discriminated from the taxa of similar valve shape and size by consistently lower lineolae density, and from the majority of them also by the structure of external proximal raphe endings with small projections in proximal parts and larger triangular insertions in distal parts. Some remarks on Navicula species diversity and its distribution in the Southeast Asia are given.

Two new freshwater species of Surirella (Bacillariophyta) from the Wuling Mountains, China.

Two sympatric Surirella species found at the same specific locality in the Wuling Mountains of China are documented with light and scanning electron microscope. Both species are new to science and named S.wufluminensis sp. nov. and S.suiningensis sp. nov. Surirellawufluminensis has large frustules that are either clockwise or counterclockwise twisted when viewed with the light microscope, and possesses distinctive fibulae, mound-like outgrowths on the valve surface throughout, raised longitudinal ridges on both sides of the raphe, and two helictoglossa-like processes at one apex internally. Surirellasuiningensis has narrowly ovate valve outline, distinctive fibulae, troughs alternating with crests from pole to pole, and two helictoglossa-like processes at one apex internally. These two species do not produce costae on the valve surface in contrast to many species in Surirella. This study provides a further two examples of the wide range of morphological diversity in the genus Surirella.

Cymbopleuranatellia - a new species from Transbaikal area (Russia, Siberia) described on the basis of molecular and morphological investigation.

A new cymbelloid diatom species from the genus Cymbopleura (Krammer) Krammer is described on the basis of molecular and morphological investigations. Cymbopleuranatellia Glushchenko, Kulikovskiy & Kociolek, sp. nov. is, on the basis of results with molecular data, close to C.naviculiformis (Auerswald ex Heiberg) Krammer. The two species differ both by molecular distance and morphological features. Morphologically, C.natellia sp. nov. is compared with several other species in the genus. This work is a pioneer investigation of cymbelloid taxa using molecular tool from Transbaikal area.

Three new Luticola D.G.Mann (Bacillariophyta) species from Rapa Nui (Easter Island) found in terrestrial diatom assemblages dominated by widely distributed taxa.

BACKGROUND: Rapa Nui (Easter Island = Isla de Pasqua) is of volcanic origin, best known for about 900 man-made stone statues known as moai. It is one of the most isolated inhabited islands on Earth and studies on the diatoms of Rapa Nui are very few. METHODS: Light (LM) and electron microscopic (SEM) observations of a single sample collected from Rapa Nui are presented. The samples (mix of soil and organic detritus) were collected from ground of cave entrance. RESULTS: The samples were characterized by low diatom diversity and strongly dominated by terrestrial (soil) forms. Among the taxa present in the material studied were cosmopolitan forms of the genera Humidophila, Nitzschia, Angusticopula, Orthoseira, Tryblionella and Luticola. Whereas most of taxa of the enumerated genera were identifiable, only one among four Luticola species distinguished in the samples studied was identified. This taxon was L. ectorii, a cosmopolitan species known previously from South America (Brazil) and Asia (China). The three remaining species could not be assigned to any established species. Therefore, based on external and internal morphological features from light and scanning electron microscopic analysis, we describe here three species new to science, including: L. georgzizkae, L. rapanuiensis and L. moaiorum. All three taxa new to science are compared to established Luticola species and their significance for the global distribution of the genus is discussed.

Achnanthidium tinea sp. nov. - a new monoraphid diatom (Bacillariophyceae) species, described on the basis of molecular and morphological approaches.

A new monoraphid diatom species Achnanthidium tinea Tseplik, Kulikovskiy, Kociolek & Maltsev, sp. nov. is described from Indonesia. The species is described on the basis of molecular and morphological analyses. According to molecular data the new species belongs to the clade that includes strains of Achnanthidium minutissimum, Achnanthidium saprophilum and Achnanthidium digitatum. Morphologically, the new species differs quite significantly from other species of the same genus because of linear-elliptic valves with almost parallel sides and strongly radiate striae and a butterfly-shaped fascia on the raphe valve. The morphology and phylogeny of the new species are discussed, and thoughts on the current state of the taxonomy of the genus Achnanthidium are expressed. Our work shows the importance of using molecular data in diatom systematics and also demonstrates the need to investigate rarely studied regions of our planet.

Biogeography of the cosmopolitan terrestrial diatom Hantzschia amphioxys sensu lato based on molecular and morphological data.

Until now, the reported diversity of representatives from the genus Hantzschia inhabiting soils from different parts of Eurasia was limited to the few species H. amphioxys, H. elongata and H. vivax and some of their infraspecific taxa. We have studied the morphology, ultrastructure and phylogeny of 25 soil diatom strains, which according to published description would be assigned to "H. amphioxys sensu lato" using 18S rDNA, 28S rDNA and rbcL. We show that strains are made up of seven different species of Hantzschia, including five new for science. Five strains were identified as H. abundans. This species has a slight curvature of the raphe near its external proximal ends. Four of the examined strains were represented by different populations of H. amphioxys and their morphological characteristics fully correspond with its isolectotype and epitype. The main specific features of this species include 21-25 striae in 10 µm, 6-11 fibulae in 10 µm, 40-50 areolae in 10 µm and internal proximal raphe endings bent in opposite directions. H. attractiva sp. nov., H. belgica sp. nov., H. parva sp. nov., H. pseudomongolica sp. nov. and H. stepposa sp. nov. were described based on differences in the shape of the valves, significant differences in dimensions, a lower number of striae and areolae in 10 µm and the degree and direction of deflection of the internal central raphe endings. Based on the study of the morphological variability and phylogeny of soil Hantzschia-species from different geographical locations we conclude that while some species such as H. amphioxys are truly cosmopolitan in their distributions, some sympatric populations of pseudocryptic taxa exist in the Holarctic.

A New Species of Freshwater Algae Nephrochlamys yushanlensis sp. nov. (Selenastraceae, Sphaeropleales) and Its Lipid Accumulation during Nitrogen and Phosphorus Starvation.

The new species Nephrochlamys yushanlensis sp. nov. is described from a freshwater plankton sample. A comparison of morphology, 18S rDNA gene and ITS2 sequences, and fatty acid profiles showed that the novel strain represents a new lineage within the genus Nephrochlamys. For the first time with a member of the Selenastraceae, experiments with phosphate and nitrate deprivation were conducted to evaluate changes in biomass, lipid and triacylglycerol (TAGs) accumulation, and composition of fatty acids. Biomass dry weight under simultaneous nitrogen and phosphorus depletion was 1.73 g · L-1 , which is significantly lower than the 2.41 g · L-1 observed in the control. All conditions of nutrient restriction significantly increased the lipid content in comparison with the control. The largest increase in the total lipid content, reaching 58.64% DW per cell at the end of cultivation, occurred with nitrogen deficiency. Significant increases in TAGs content (to 23.69% and 21.74%, respectively) occurred in phosphorus- and nitrogen-depleted conditions in comparison to the control (16.90%). Oleic (49.8-64.1%), palmitic (21.1-22.7%), and linoleic (8.6-10.3%) acids were the dominant fatty acids when cultured on standard BBM medium, as well as with the shortage of nutrients. Phosphorus deprivation as well as absence of both nitrogen and phosphorus led to the appearance of FAMEs α-linolenic (1.5-4.1%) and stearidonic (1.0-1.8%) acids. In general, FAME profiles revealed that the relative percentage of saturated and monounsaturated fatty acids increased (88.9% of total fatty acids) in nitrogen-depletion conditions, suggesting this strain may be suitable for biodiesel production.

Four new species from the diatom (Bacillariophyceae) genus Adlafia Moser, Lange-Bertalot & Metzeltin from waterbodies of Vietnam.

Four species of the diatom genus Adlafia were found from waterbodies of Vietnam and described as new to science. Their formal descriptions are presented herein and they are illustrated by light and scanning electron micrographs. These new species are: A. lamdongiensis Glushch., Kulik. & Kociolek, sp. nov., A. babeiensis Glushch., Kulik. & Kociolek, sp. nov., A. vietnamensis Glushch., Kulik. & Kociolek, sp. nov. and A. dauiensis Glushch., Kulik. & Kociolek, sp. nov. These species are then compared to other similar taxa. Our new findings add to the number of species in this interesting genus and contribute to our understanding of the unique diatom flora found in Vietnam.