Effects of Stereo and Screen Size on the Legibility of Three-Dimensional Streamtube Visualization.

We report the impact of display characteristics (stereo and size) on task performance in diffusion magnetic resonance imaging (DMRI) in a user study with 12 participants. The hypotheses were that (1) adding stereo and increasing display size would improve task accuracy and reduce completion time, and (2) the greater the complexity of a spatial task, the greater the benefits of an improved display. Thus we expected to see greater performance gains when detailed visual reasoning was required. Participants used dense streamtube visualizations to perform five representative tasks: (1) determine the higher average fractional anisotropy (FA) values between two regions, (2) find the endpoints of fiber tracts, (3) name a bundle, (4) mark a brain lesion, and (5) judge if tracts belong to the same bundle. Contrary to our hypotheses, we found the task completion time was not improved by the use of the larger display and that performance accuracy was hurt rather than helped by the introduction of stereo in our study with dense DMRI data. Bigger was not always better. Thus cautious should be taken when selecting displays for scientific visualization applications. We explored the results further using the body-scale unit and subjective size and stereo experiences.

Different Strokes for Different Folks: Visual Presentation Design between Disciplines.

We present an ethnographic study of design differences in visual presentations between academic disciplines. Characterizing design conventions between users and data domains is an important step in developing hypotheses, tools, and design guidelines for information visualization. In this paper, disciplines are compared at a coarse scale between four groups of fields: social, natural, and formal sciences; and the humanities. Two commonplace presentation types were analyzed: electronic slideshows and whiteboard "chalk talks". We found design differences in slideshows using two methods - coding and comparing manually-selected features, like charts and diagrams, and an image-based analysis using PCA called eigenslides. In whiteboard talks with controlled topics, we observed design behaviors, including using representations and formalisms from a participant's own discipline, that suggest authors might benefit from novel assistive tools for designing presentations. Based on these findings, we discuss opportunities for visualization ethnography and human-centered authoring tools for visual information.

Simulation and visualization of topological defects in nematic liquid crystals.

We present a method of visualizing topological defects arising in numerical simulations of liquid crystals. The method is based on scientific visualization techniques developed to visualize second-rank tensor fields, yielding information not only on the local structure of the field but also on the continuity of these structures. We show how these techniques can be used to first locate topological defects in fluid simulations of nematic liquid crystals where the locations are not known a priori and then study the properties of these defects including the core structure. We apply these techniques to simulation data obtained by previous authors who studied a rapid quench and subsequent equilibration of a Gay-Berne nematic. The quench produces a large number of disclination loops which we locate and track with the visualization methods. We show that the cores of the disclination lines have a biaxial region and the loops themselves are of a hybrid wedge-twist variety.

Combined effects of pulsatile flow and dynamic curvature on wall shear stress in a coronary artery bifurcation model.

A three-dimensional model with simplified geometry for the branched coronary artery is presented. The bifurcation is defined by an analytical intersection of two cylindrical tubes lying on a sphere that represents an idealized heart surface. The model takes into account the repetitive variation of curvature and motion to which the vessel is subject during each cardiac cycle, and also includes the phase difference between arterial motion and blood flowrate, which may be nonzero for patients with pathologies such as aortic regurgitation. An arbitrary Lagrangian Eulerian (ALE) formulation of the unsteady, incompressible, three-dimensional Navier-Stokes equations is employed to solve for the flow field, and numerical simulations are performed using the spectral/hp element method. The results indicate that the combined effect of pulsatile inflow and dynamic geometry depends strongly on the aforementioned phase difference. Specifically, the main findings of this work show that the time-variation of flowrate ratio between the two branches is minimal (less than 5%) for the simulation with phase difference angle equal to 90 degrees, and maximal (51%) for 270 degrees. In two flow pulsatile simulation cases for fixed geometry and dynamic geometry with phase angle 270 degrees, there is a local minimum of the normalized wall shear rate amplitude in the vicinity of the bifurcation, while in other simulations a local maximum is observed.

Three-dimensional, time-resolved (4D) relative pressure mapping using magnetic resonance imaging.

We describe here a method for generating relative pressure maps from magnetic resonance velocity data in three spatial and one temporal dimension (4D). The relative pressure map calculated for pulsatile flow in a compliant phantom was shown to be consistent with independent pressure transducer measurements. The feasibility of performing 4D pressure mapping in vivo is also demonstrated.

Coactivation of the antagonist muscle does not covary with steadiness in old adults.

The purpose of the study was to determine the association between steadiness and activation of the agonist and antagonist muscles during isometric and anisometric contractions. Young (n = 14) and old (n = 15) adults used the first dorsal interosseus muscle to perform constant-force and constant-load tasks (2.5, 5, 20, 50, and 75% maximum) with the left index finger. Steadiness was quantified as the coefficient of variation of force and the SD of acceleration normalized to the load lifted. The old adults were less steady at most target forces with isometric contractions (2.5, 5, and 50%) and with most loads during the anisometric contractions (2.5, 5, and 20%). Furthermore, the old adults were less steady when performing lengthening contractions (up to 50%) compared with shortening contractions, whereas there was no difference for young adults. The reduced steadiness exhibited by the old adults during these tasks was not associated with differences in the average level of agonist muscle electromyogram or with coactivation of the antagonist muscle.

Steadiness is reduced and motor unit discharge is more variable in old adults.

The purpose of this study was to compare the steadiness and discharge rate of motor units during submaximal contractions performed by young and old adults. Subjects performed isometric and slow shortening and lengthening contractions with the first dorsal interosseous muscle. The steadiness of the isometric and slow anisometric contractions was less for the old subjects compared with young subjects, especially at the lower target forces and with the lightest loads. Furthermore, the steadiness of the lengthening contractions was less compared with the shortening contractions for the old subjects. Although the mean discharge rates of motor units were not different for the two groups of subjects, the variability of the discharge rates was greater for the old subjects during the isometric and anisometric contractions. We conclude that a more variable discharge by single motor units probably contributes to the reduced ability of old adults to perform steady muscle contractions.

Strength training improves the steadiness of slow lengthening contractions performed by old adults.

When old adults participate in a strength-training program with heavy loads, they experience an increase in muscle strength and an improvement in the steadiness of submaximal isometric contractions. The purpose of this study was to determine the effect of light- and heavy-load strength training on the ability of old adults to perform steady submaximal isometric and anisometric contractions. Thirty-two old adults (60-91 yr) participated in a 4-wk training program of a hand muscle. Both the light- and heavy-load groups increased one-repetition maximum and maximal voluntary contraction (MVC) strength and experienced similar improvements in the steadiness of the isometric and shortening and lengthening contractions. The increase in MVC strength was greater for the heavy-load group and could not be explained by changes in muscle activation. Before training, the lengthening contractions were less steady than the shortening contractions with the lightest loads (10% MVC). After training, there was no difference in steadiness between the shortening and lengthening contractions, except with the lightest load. These improvements were associated with a reduced level of muscle activation, especially during the lengthening contractions.

MR microscopy of transgenic mice that spontaneously acquire experimental allergic encephalomyelitis.

Pathology of fixed spinal cords from transgenic mice with a myelin basic protein (MBP) specific T cell receptor was investigated. These mice spontaneously acquire the demyelinating disease experimental allergic encephalomyelitis (EAE). Several complementary imaging modalities, all on the same tissues, were used to visualize lesions; these included high-field (11.7-T) microscopic diffusion tensor imaging (DTI), T2*-weighted imaging, and optical microscopy on histological sections. Lesions were predominantly in white matter around meninges and vasculature and appeared hyperintense in anatomical images. DTIs showed reduced diffusion anisotropy in the same hyperintense regions, consistent with inflammation and edema. Histology in the same tissues exhibited the characteristic pathology of EAE. Two techniques for visualizing the effective diffusion tensor fields are presented, which display direction, organization, and integrity of neuronal fibers. It is shown that DTI offers intriguing possibilities for visualizing axonal organization and lesions within white matter.

Partial-volume Bayesian classification of material mixtures in MR volume data using voxel histograms.

We present a new algorithm for identifying the distribution of different material types in volumetric datasets such as those produced with magnetic resonance imaging (MRI) or computed tomography (CT). Because we allow for mixtures of materials and treat voxels as regions, our technique reduces errors that other classification techniques can create along boundaries between materials and is particularly useful for creating accurate geometric models and renderings from volume data. It also has the potential to make volume measurements more accurately and classifies noisy, low-resolution data well. There are two unusual aspects to our approach. First, we assume that, due to partial-volume effects, or blurring, voxels can contain more than one material, e.g., both muscle and fat; we compute the relative proportion of each material in the voxels. Second, we incorporate information from neighboring voxels into the classification process by reconstructing a continuous function, rho(x), from the samples and then looking at the distribution of values that rho(x) takes on within the region of a voxel. This distribution of values is represented by a histogram taken over the region of the voxel; the mixture of materials that those values measure is identified within the voxel using a probabilistic Bayesian approach that matches the histogram by finding the mixture of materials within each voxel most likely to have created the histogram. The size of regions that we classify is chosen to match the spacing of the samples because the spacing is intrinsically related to the minimum feature size that the reconstructed continuous function can represent.

Fiber-type composition of hindlimb muscles in the turtle, Pseudemys (Trachemys) scripta elegans.

A description is provided of the fiber-type composition of several hindlimb muscles of the adult turtle, Pseudemys (Trachemys) scripta elegans. In addition, cross-section areas of each fiber type and an estimation of the relative (weighted) cross-section area (wCSA) occupied by the different fiber types are also provided. Seven muscles were selected for study, based on their suitability for future neurophysiological analysis as components of the segmental motor system, and on their homologies with muscles in other vertebrates. The test muscles were iliofibularis (ILF), ambiens (AMB), external gastrocnemius (EG), extensor digitorum communis (EDC), flexor digitorum longus (FDL), tibialis anterior (TA), and peroneus anterior (PA). Serial sections of these muscles were stained for myosin adenosine triphosphatase (ATPase), NADH-diaphorase, and alpha-glycerophosphate dehydrogenase (alpha-GPDH), thereby enabling fiber-type classification on the basis of indirect markers for contraction speed and oxidative (aerobic) vs. glycolytic (anaerobic) metabolism. All muscles contained three fiber types: slow oxidative (SO; possibly including some non-twitch tonic fibers); fast oxidative glycolytic (FOG); and fast glycolytic (Fg). There were at least 30% FOG and 50% FOG + Fg fibers in the seven muscles, the extreme distributions being the predominantly glycolytic ILF vs. the predominantly oxidative FDL muscle (ILF--15.5% SO, 35.2% FOG, 49.3% Fg vs. FDL--49.1% SO, 41.1% FOG, 9.8% Fg). As in other species, the test muscles exhibited varying degrees of regional concentration (compartmentalization) of the different fiber types. This feature was most striking in ILF. Pronounced compartmentalization was also observed in AMB, EG, PA, TA, and EDC, whereas the distribution of fiber types in the highly oxidative FDL was homogeneous. In five of the seven muscles, fiber size was ranked with Fg > FOG > SO. In terms of wCSA, which provides a coarse-grain measure of the different fiber types' potential contribution to whole muscle peak force, all muscles exhibited a higher Fg and lower SO contribution to cross-section area than suggested by their corresponding fiber-type composition. The largest relative increase in wCSA vs. fiber-type composition were in the ILF and AMB muscles. We conclude that the turtle hindlimb provides some interesting possibilities for testing for a division of labor among different muscles during different movements (e.g., sustained vs. ballistic), and for study of the behavior of the different fiber (and motor unit) types under normal and perturbed conditions. The relationships between the present results and previous findings on homologous muscles of the mammalian (cat, rat) and reptilian (lizard) hindlimb are discussed.

A commentary on the segmental motor system of the turtle: implications for the study of its cellular mechanisms and interactions.

A commentary is provided on the segmental motor system of the turtle Pseudemys (Trachemys) scripta elegans with an emphasis on neuronal, neuromuscular, and muscular mechanisms that control the development of force under normal, fatiguing, and pathophysiological conditions. For the central neuronal component of the segmental motor system, it has recently been shown that intracellular analysis of the firing properties of motoneurons and interneurons can be undertaken for relatively long periods of time in in vitro slices of the lumbosacral spinal cord of the adult turtle. In other less reduced in vitro preparations, analyses are available on complex motor behaviors generated by the isolated spinal cord. These behaviors of spinal neuronal networks are analogous in key aspects to those generated by the isolated in vivo cord, and by the cord in intact preparations. These results suggest that the neuronal components of the segmental motor system can not be studied from the cellular/molecular level of analysis in in vitro slice preparations to the systems level in conscious, freely moving animals. The in vitro approach can also be used for the analysis of cellular mechanisms in suprasegmental brain structures, which contribute to the control of voluntary movement. For the peripheral neuromuscular component of the segmental motor system, information is now available on muscle fiber types and selected aspects of sensory innervation, and it is feasible to study the mechanical and biochemical properties of motor units. As such, the turtle presents a valuable model for exploring interrelations between the neuronal and mechanical components of the segmental motor system of the generalized tetrapod. A prominent feature of these recent developments is the extent to which they have been driven by findings that have emphasized an evolutionary conservation of motor-control mechanisms extending from ion channels, at the cellular level, to the control of multijointed movements at the systems level of analysis.

Pure phase-encoded MRI and classification of solids.

Here, the authors combine a pure phase-encoded magnetic resonance imaging (MRI) method with a new tissue-classification technique to make geometric models of a human tooth. They demonstrate the feasibility of three-dimensional imaging of solids using a conventional 11.7-T NMR spectrometer. In solid-state imaging, confounding line-broadening effects are typically eliminated using coherent averaging methods. Instead, the authors circumvent them by detecting the proton signal at a fixed phase-encode time following the radio-frequency excitation. By a judicious choice of the phase-encode time in the MRI protocol, the authors differentiate enamel and dentine sufficiently to successfully apply a new classification algorithm. This tissue-classification algorithm identifies the distribution of different material types, such as enamel and dentine, in volumetric data. In this algorithm, the authors treat a voxel as a volume, not as a single point, and assume that each voxel may contain more than one material. They use the distribution of MR image intensities within each voxel-sized volume to estimate the relative proportion of each material using a probabilistic approach. This combined approach, involving MRI and data classification, is directly applicable to bone imaging and hard-tissue contrast-based modeling of biological solids.

Sensitivity of muscle proton spin-spin relaxation time as an index of muscle activation.

The purpose of this study was to determine the minimum number of contractions that are needed to detect an increase in the muscle proton spin-spin relaxation time (T2) at a given exercise intensity. Five healthy human subjects performed five sets of an exercise that included concentric and eccentric contractions of the elbow-flexor muscles with loads that were 25 or 80% of maximum. With the 80% load, the five sets involved 1, 2, 5, 10, or 20 repetitions of the exercise; with the 25% load the five sets were 2, 5, 10, 20, or 40 repetitions. The upper arm of each subject was imaged before and immediately after each set of the exercise. Spin-echo images (repetition time/echo time = 2,000 ms/30, 60, 90, and 120 ms) were collected using an extremity coil, and T2 values were calculated. The signal intensity was measured from the elbow-flexor and -extensor muscles and from the bone marrow of the humerus. With the 80% load, T2 increased in the short head of the biceps brachii after two repetitions of the elbow exercise and after five repetitions in the brachialis and the long head of the biceps brachii. With the 25% load, T2 became longer after five repetitions of the exercise for the short head of the biceps brachii and after 10 repetitions for the brachialis and the long head of the biceps brachii. T2 varied linearly with the number of contraction repetitions for each of the elbow-flexor muscles at either load (r2 > or = 0.97, P < 0.001).(ABSTRACT TRUNCATED AT 250 WORDS)