Responses of the coral reef cryptobiome to environmental gradients in the Red Sea.

An essential component of the coral reef animal diversity is the species hidden in crevices within the reef matrix, referred to as the cryptobiome. These organisms play an important role in nutrient cycling and provide an abundant food source for higher trophic levels, yet they have been largely overlooked. Here, we analyzed the distribution patterns of the mobile cryptobiome (>2000 µm) along the latitudinal gradient of the Saudi Arabian coast of the Red Sea. Analysis was conducted based on 54 Autonomous Reef Monitoring Structures. We retrieved a total of 5273 organisms, from which 2583 DNA sequences from the mitochondrially encoded cytochrome c oxidase I were generated through sanger sequencing. We found that the cryptobiome community is variable over short geographical distances within the basin. Regression tree models identified sea surface temperature (SST), percentage cover of hard coral and turf algae as determinant for the number of operational taxonomic units present per Autonomous Reef Monitoring Structures (ARMS). Our results also show that the community structure of the cryptobiome is associated with the energy available (measured as photosynthetic active radiation), sea surface temperature, and nearby reef habitat characteristics (namely hard corals, turf and macroalgae). Given that temperature and reef benthic characteristics affect the cryptobiome, current scenarios of intensive climate change are likely to modify this fundamental biological component of coral reef functioning. However, the trajectory of change is unknow and can be site specific, as for example, diversity is expected to increase above SST of 28.5°C, and with decreasing hard coral and turf cover. This study provides a baseline of the cryptobenthic community prior to major coastal developments in the Red Sea to be used for future biodiversity studies and monitoring projects. It can also contribute to better understand patterns of reef biodiversity in a period where Marine Protected Areas are being discussed in the region.

Biodiversity patterns of the coral reef cryptobiota around the Arabian Peninsula.

The Arabian Peninsula accounts for approximately 6% of the world's coral reefs. Some thrive in extreme environments of temperature and salinity. Using 51 Autonomous Reef Monitoring Structure (ARMS), a standardized non-destructive monitoring device, we investigated the spatial patterns of coral reef cryptobenthic diversity in four ecoregions around the Arabian Peninsula and analyzed how geographical and/or environmental drivers shape those patterns. The mitochondrial cytochrome c oxidase subunit I (COI) gene was used to identify Amplicon Sequence Variants and assign taxonomy of the cryptobenthic organisms collected from the sessile and mobile fractions of each ARMS. Cryptobenthic communities sampled from the two ecoregions in the Red Sea showed to be more diverse than those inhabiting the Arabian (Persian) Gulf and the Gulf of Oman. Geographic distance revealed a stronger relationship with beta diversity in the Mantel partial correlation than environmental distance. However, the two mobile fractions (106-500 µm and 500-2000 µm) also had a significant correlation between environmental distance and beta diversity. In our study, dispersal limitations explained the beta diversity patterns in the selected reefs, supporting the neutral theory of ecology. Still, increasing differences in environmental variables (environmental filtering) also had an effect on the distribution patterns of assemblages inhabiting reefs within short geographic distances. The influence of geographical distance in the cryptofauna assemblages makes these relevant, yet usually ignored, communities in reef functioning vulnerable to large scale coastal development and should be considered in ecosystem management of such projects.

An examination of introgression and incomplete lineage sorting among three closely related species of chocolate-dipped damselfish (genus: Chromis).

AIM: To determine the impact of ecological and environmental histories on the evolution of coral reef damselfishes at two adjacent marine biogeographic suture zones. LOCATION: Indo-West Pacific, notably including two suture zones: Socotra and Christmas and Cocos/Keeling Islands. TAXON: Chromis dimidiata, Chromis margaritifer, and Chromis fieldi. METHODS: We utilized a combination of nuclear and mitochondrial genetic markers in addition to visual abundance survey data of these fishes. RESULTS: Despite genetic patterns consistent with incomplete lineage sorting and relatively low genetic differentiation among the three studied Chromis species, there is evidence of hybridization between C. margaritifer and C. fieldi at Christmas Island based on molecular and visual identification. Introgression appears to be spreading westwards to other C. fieldi populations based on COI haplotype comparison. Moreover, the genetic distance between C. margaritifer and C. fieldi suggests that Pleistocene sea-level fluctuations may have contributed to allopatric divergence and secondary contact between these two closely related species. MAIN CONCLUSIONS: Our study highlights that evolutionary processes in coral reef fishes operate differently between suture zones, possibly due to different ecological and environmental predispositions regulating secondary contact of sister species. While secondary contact likely led to hybridization and introgression at Christmas and Cocos/Keeling Islands, none of those processes seem present at Socotra for the chocolate-dipped damselfish. This difference is likely due to an environmental barrier caused by hydrodynamic regimes in the Gulf of Aden.

Cross shelf benthic biodiversity patterns in the Southern Red Sea.

The diversity of coral reef and soft sediment ecosystems in the Red Sea has to date received limited scientific attention. This study investigates changes in the community composition of both reef and macrobenthic communities along a cross shelf gradient. Coral reef assemblages differed significantly in species composition and structure with location and depth. Inner shelf reefs harbored less abundant and less diverse coral assemblages with higher percentage macroalgae cover. Nutrient availability and distance from the shoreline were significantly related to changes in coral composition and structure. This study also observed a clear inshore offshore pattern for soft sediment communities. In contrast to the coral reef patterns the highest diversity and abundance of soft sediment communities were recorded at the inshore sites, which were characterized by a higher number of opportunistic polychaete species and bivalves indicative of mild disturbance. Sediment grain size and nutrient enrichment were important variables explaining the variability. This study aims to contribute to our understanding of ecosystem processes and biodiversity in the Red Sea region in an area that also has the potential to provide insight into pressing topics, such as the capacity of reef systems and benthic macrofaunal organisms to adapt to global climate change.

Colony size-frequency distribution of pocilloporid juvenile corals along a natural environmental gradient in the Red Sea.

Coral colony size-frequency distributions can be used to assess population responses to local environmental conditions and disturbances. In this study, we surveyed juvenile pocilloporids, herbivorous fish densities, and algal cover in the central and southern Saudi Arabian Red Sea. We sampled nine reefs with different disturbance histories along a north-south natural gradient of physicochemical conditions (higher salinity and wider temperature fluctuations in the north, and higher turbidity and productivity in the south). Since coral populations with negatively skewed size-frequency distributions have been associated with unfavorable environmental conditions, we expected to find more negative distributions in the southern Red Sea, where corals are potentially experiencing suboptimal conditions. Although juvenile coral and parrotfish densities differed significantly between the two regions, mean colony size and size-frequency distributions did not. Results suggest that pocilloporid colony size-frequency distribution may not be an accurate indicator of differences in biological or oceanographic conditions in the Red Sea.

Productivity and sea surface temperature are correlated with the pelagic larval duration of damselfishes in the Red Sea.

We examined the variation of pelagic larval durations (PLDs) among three damselfishes, Dascyllus aruanus, D. marginatus, and D. trimaculatus, which live under the influence of an environmental gradient in the Red Sea. PLDs were significantly correlated with latitude, sea surface temperature (SST), and primary production (CHLA; chlorophyll a concentrations). We find a consistent decrease in PLDs with increasing SST and primary production (CHLA) towards the southern Red Sea among all species. This trend is likely related to higher food availability and increased metabolic rates in that region. We suggest that food availability is a potentially stronger driver of variation in PLD than temperature, especially in highly oligotrophic regions. Additionally, variations in PLDs were particularly high among specimens of D. marginatus, suggesting a stronger response to local environmental differences for endemic species. We also report the first average PLD for this species over a broad geographic range (19.82 ± 2.92 days).

Invertebrate colonization on artificial substrates in a coral reef at Gorgona Island, Colombian Pacific Ocean / Colonización de invertebrados sobre sustratos artificiales en un arrecife de coral en la Isla Gorgona, Océano Pacífico colombiano

Habitat colonization is a fundamental process in marine population dinamics and community ecology. Marine invertebrate colonization of artificial hard substrates and its spatial variation was studied over the course of one year at La Azufrada coral reef, Gorgona Island, Colombia. Five sets of artificial plates (terracotta and ceramic) were deployed parallel to the bottom in each of three reef zones (backreef, flat and slope). Plates were recovered after 12 months of their installation. The community that developed on the artificial substrate plates was composed of 24 taxa, among which corals were remarkably absent. Species richness on plates did not differ between reef zones, type of plate material or plate surfaces. The resulting community was dominated by barnacles (Balanus trigonus) with a mean density of 26 787.8 (±47 301.0) individuals/m² (mean±1S.D.). The density of this species was significantly higher on plates deployed on the reef slope than on the reef flat or back reef, and was lower on the upper than on the lower or lateral surfaces of plates. The dominance of B. trigonus on artificial plates during this experiment suggests a possible synergistic effect between its reproductive traits and competitive ability for space, which prevents the successful recruitment of other reef organisms such as corals. Rev. Biol. Trop. 62 (Suppl. 1): 161-168. Epub 2014 February 01.

La colonización de hábitat disponible es un proceso fundamental de la ecología de poblaciones y comunidades de organismos marinos. La colonización sobre sustratos artificiales por invertebrados y su variación espacial fue estudiada por un año en el arrecife coralino de La Azufrada, Isla Gorgona (Colombia). Cinco juegos de baldosas (terracota y grés) fueron dispuestos en tres zonas arrecifales (trasarrecife, planicie y talud). Las baldosas fueron recuperadas y examinadas después de 12 meses posteriores a su instalación. La comunidad desarrollada estuvo compuesta por 24 taxa siendo notable la ausencia de corales. No se encontraron diferencias en la riqueza de especies entre las zonas arrecifales, los materiales utilizados y las superficies de las baldosas. Las baldosas fueron dominadas por cirripedios (Balanus trigonus) con una densidad de 26 787.8 (±47 301.0) ind/m² (media±1D.E). La densidad de esta especie fue significativamente más alta en el talud y menor en las superficies superiores. La dominancia de B. trigonus durante el experimento sugiere un posible efecto sinérgico entre sus características reproductivas y su habilidad competitiva por el espacio evitando que otros organismos, como los corales, recluten exitosamente.

Short-term assessment of the sediment deposition rate and water conditions during a rainy season on La Azufrada coral reef, Gorgona Island, Colombia / Evaluación a corto plazo de la tasa de deposición de sedimentos y las condiciones del agua durante una temporada de lluvias en el arrecife coralino La Azufrada, Isla Gorgona, Colombia

One of the major stresses on corals is the settlement of suspended sediment on their surfaces. This leads to the blocking of light, the covering of the coral mucus surface and an increased risk of disease. For this reason sediment deposition on a reef is considered a highly important variable in coral reef studies. With the use of sediment traps and oceanographic sensors, the sediment deposition rate and water conditions during a rainy season (April-May 2009) on a Tropical Eastern Pacific coral reef (La Azufrada) at Gorgona Island in Colombia were investigated. To quantify sediment deposition, sediment traps were established in nine stations along the coral reef (three stations per reef zone: backreef, flat and slope). To minimize disturbance by aquatic organisms in the sediment traps these were filled with hypersaline borax-buffered 10% formaline solution before their deployment; animals found in the filter contents were fixed and stored in a 4% formalin solution, frozen and identified in the laboratory. To determine the water conditions, discrete samples of water from 1 m and 10 m depths were collected using a Niskin bottle. Oceanographic variables (temperature, salinity and dissolved oxygen) as well as turbidity, chlorophyll and nutrient concentration (nitrite, nitrate and phosphorus) were measured in the samples from both depths. Vertical records of temperature and salinity were carried out with a Seabird-19 CTD nearest to La Azufrada and water transparency was measured using a Secchi disk. We found a mean trap collection rate of 23.30±4.34gm-2d-1 and did not detect a significant difference in the trap collection rate among reef zones. The mean temperature and salinity in the coral reef depth zone (0-10m layer) were 26.98±0.19°C and 32.60±0.52, respectively. Fourteen taxonomic groups of invertebrates were detected inside the sediment traps with bivalves and copepods being the most abundant and frequen. The findings presented here constitute the first report of both the potential sediment deposition rates and the water conditions of La Azufrada coral reef. Rev. Biol. Trop. 62 (Suppl. 1): 107-116. Epub 2014 February 01.

Uno de los principales factores de estrés en los corales es el asentamiento de sedimento suspendido sobre su superficie. Esto conlleva al bloqueo de la luz, el cubrimiento superficial del mucus coralino e incremento del riesgo de enfermedades. Por esta razón, la sedimentación en considerada como un variable de alta importancia en el estudio de los arrecifes coralinos. Por medio de trampas de sedimentación (en nueve estaciones: seis por zona arrecifal), este proceso fue estudiado en un arrecife coralino (La Azufrada) del Pacífico Oriental Tropical, localizado en Isla Gorgona, Colombia. En las trampas se encontró una tasa promedio de colecta de sedimento de 23.30±4.34gm-2d-1 a y no se detectaron diferencias significativas entre las zonas arrecifales. La temperatura promedio y salinidad de la columna de agua donde habitan corales en este arrecife (entre 0 y 10m) fue 26.98±0.19°C y 32.60±0.52, respectivamente. Catorce grupos taxonómicos de invertebrados fueron encontrados en las trampas de sedimentación. Los bivalvos y copépodos fueron los más abundantes y frecuentes. Los resultados presentados constituyen el primer reporte de la tasa de deposición de sedimentos y de las condiciones del agua en La Azufrada. Estos resultados representan una línea base para estudios posteriores, aunque se necesita más investigación sobre estos temas que son esenciales para el manejo de los arrecifes coralinos.