Hey ho, where'd the proton go? Final deprotonation of O6 within the S3 state of photosystem II.

The deprotonation of O6 within the S3 state marks the final deprotonation event before the formation of oxygen­oxygen bond interactions and eventual production and release of dioxygen. Gaining a thorough understanding of this event, from the proton acceptors involved, to the exfiltration pathways available, is key in determining the nature of the resulting oxygen species, influencing the mechanism through which the first oxygen­oxygen bond forms. Computational analysis, using BS-DFT methodologies, showed that proton abstraction by the local Glu189 residue provides consistent evidence against this being a viable mechanistic pathway due to the lack of a stable product structure. In contrast, abstraction via W3 shows an increasingly stable oxo-oxo product state between r[O5O6] = 2.1 Å & 1.9 Å. The resulting oxo-oxo state is stabilised through donation of ß electron character from O6 to Mn1 and α electron character from O6 to O5. This donation from the O6 lone pair is shown to be a key factor in stabilising the oxo-oxo state, in addition to showing the initiation of first O5-O6 bond.

Insights into PSII's S3YZ• State: An Electronic and Magnetic Analysis.

Using BS-DFT (broken-symmetry density functional theory), the electronic and magnetic properties of the S3YZ• state of photosystem II were investigated and compared to those of the S3 state. While the O5 oxo-O6 hydroxo species presents little difference between the two states, a previously identified [O5O6]3- exhibits reduced stabilization of the O5-O6 shared spin. This species is shown to have some coupling with the YZ• center through Mn1 and O6. Similarly, a peroxo species is found to exhibit significant exchange couplings between the YZ• center and the Mn cluster through Mn1. Mechanistic changes in O-O bond formation in S3YZ• are highlighted by analysis of IBOs (intrinsic bonding orbitals) showing deviation for Mn1 and O6 centered IBOs. This change in coupling interactions throughout the complex as a result of S3YZ• formation presents implications for the determination of the mechanism spanning the end of the S3 and the start of the S4 states, affecting both electron movement and oxygen bond formation.

Selective Transesterification to Control Copolymer Microstructure in the Ring-Opening Copolymerization of Lactide and ε-Caprolactone by Lanthanum Complexes.

A series of novel lanthanum amido complexes, supported by ligands designed around the salan framework (salan = N,N'-bis(o-hydroxy, m-di-tert-butylbenzyl)-1,2-diaminoethane) were synthesized and fully characterized in the solid and solution states. The ligands incorporate benzyl or 2-pyridyl substituents at each tertiary amine center. The complexes were investigated as catalysts in the ring-opening homopolymerization of lactide (LA) and ε-caprolactone (ε-CL) and copolymerization of equimolar amounts of LA and ε-CL at ambient temperature. Solvent (THF or toluene) and the number of 2-pyridyl groups in the complex were found to influence the reactivity of the catalysts in copolymerization reactions. In all cases, complete conversion of LA to PLA was observed. The use of THF, a coordinating solvent, suppressed ε-CL polymerization, while the presence of one or more 2-pyridyl groups promoted ε-CL polymerization. Each copolymer gave a monomodal trace in gel permeation chromatography-size-exclusion chromatography (GPC-SEC) experiments, indicative of copolymer formation over homopolymerization. Copolymer microstructure was found to be dependent on catalyst structure and reaction solvent, ranging from blocky to close to alternating. Experiments revealed rapid conversion of LA in the initial stages of the reaction, followed by incorporation of ε-CL into the copolymer by either transesterification or propagation reactions. Significantly, the mode of transesterification (TI or TII) that occurs is determined by the structure of the metal complex and the reaction solvent, leading to the possibility of controlling copolymer microstructure through catalyst design.

Computational Study on the Influence of Mo/V Centers on the Electronic Structure and Hydrazine Reduction Capability of [MFe3S4]3+/2+ Complexes.

[MFe3S4] cubanes have for some time been of interest for their ability to mimic the electronic and geometric structure of the active site of nitrogenase, the enzyme responsible for fixing N2 to NH3. Nitrogenase naturally occurs in three forms, with the major difference being that the metal ion present in the cofactor active site is either molybdenum (FeMoco), vanadium (FeVco), or iron. The molybdenum and vanadium versions of these cofactors are more closely studied, owing to their larger abundance and rate of catalysis. In this study, we compare free energy profiles and electronic properties of the Mo/V cubanes at various stages during the reduction of N2H4 to NH3. Our findings highlight the differences in how the complexes facilitate the reaction, in particular, vanadium's comparatively weaker ability to interact with the Fe/S network and stabilize reducing electrons prior to N-N bond cleavage, which may have implications when considering the lower efficiency of the vanadium-dependent nitrogenase.

Tailoring the pore size of expanded porphyrinoids for lanthanide selectivity.

Despite increase in demand, capacity for the recycling of rare earth elements remains limited, partly due to the inefficiencies with processes currently utilised in the separation of lanthanides. This study highlights the potential use of expanded porphyrinoids in lanthanide separation through selective binding, dependent on the tailored pore size of the macrocycle. Each emerging trend is subjected to multi-factored analysis to decompose the underlying source. Results promote the viability of size-based separation with preferential binding of larger lanthanum(iii) ions to amethyrin and isoamethyrin macrocycles, while smaller macrocycles such as pentaphyrin(0.0.0.0.0) present a preferential binding of lutetium(iii) ions. Additionally, the porphyrin(2.2.2.2) macrocycle shows a selectivity for gadolinium(iii) ions over both larger and smaller ions. An upper limit of applicable pore size is shown to be ≈2.8 Å, beyond which the formed complexes are predicted to be less stable than the corresponding nitrate complexes.

The role of covalency in enhancing stability of Eu and Am complexes: a DFT comparison of BTP and BTPhen.

We compare the stabilities and bonding nature of [Eu/Am(BTPhen)2(NO3)]2+ complexes to those previously reported for [Eu/Am(BTP)3]3+, and investigate whether more accurately reflecting the reaction conditions of the separation process by considering [Eu/Am(NO3)3(H2O)x] (x = 3, 4) complexes instead of aquo complexes increases the selectivity of the separation ligands BTP and BTPhen for Am over Eu. The geometric and electronic structures of [Eu/Am(BTPhen)2(NO3)]2+ and [Eu/Am(NO3)3(H2O)x] (x = 3, 4) have been evaluated using density functional theory (DFT) and used as the basis for analysis of the electron density through the application of the quantum theory of atoms in molecules (QTAIM). Increased covalent bond character for the Am complexes of BTPhen over Eu analogues was found, with this increase more pronounced than that found in BTP complexes. BHLYP-derived exchange reaction energies were evaluated using the hydrated nitrates as a reference and a favourability for actinide complexation by both BTP and BTPhen was found, with the BTPhen ligand found to be more selective, with relative stability ≈0.17 eV greater than BTP.

Regioselective electrophilic aromatic borylation as a method for synthesising sterically hindered benzothiadiazole fluorophores.

Regioselective stepwise phenylation of 4,7-diarylbenzo[c][1,2,5]thiadiazole fluorophores has been achieved through a facile one-pot, three-step synthetic strategy involving sequential borylation, hydroxydechlorination and Suzuki-Miyaura cross-coupling reactions. Crucial to the selectivity was the use of BCl3 to regioselectively install a boronic acid group in the ortho-position of only one of the diaryl groups. The subsequent introduction of ortho-phenyl groups through Suzuki-Miyaura cross-coupling gave rise to twisted structures with hindered intramolecular rotation, providing a structural lever with which the fluorophore absorption and emission properties could be adjusted.

Protocols for Understanding the Redox Behavior of Copper-Containing Systems.

Suitability of single-reference density functional theory (DFT) methods for the calculation of redox potentials of copper-containing macrocycle complexes was confirmed by the use of T 1 diagnostics along with a verification of negligible spin contamination or wave function instability. When examining the effect of improvement in the cc-pVnZ basis set series on calculated redox potentials, the results readily converged at the cc-pVTZ level. The all-electron Def2-TZVPP basis set is shown to be a suitable choice of a basis set for the calculation of redox potentials when utilizing a cc-pVTZ geometry. The best-performing model chemistries are determined to be the M06/polarizable continuum model (PCM); therefore, a scheme for redox potential calculations of copper macrocycles using either M06/cc-pVTZ with PCM solvation is proposed to reliably reproduce experimental trends.

Photochemical carbon-sulfur bond cleavage in thioethers mediated via excited state Rydberg-to-valence evolution.

Time-resolved photoelectron imaging and supporting ab initio quantum chemistry calculations were used to investigate non-adiabatic excess energy redistribution dynamics operating in the saturated thioethers diethylsulfide, tetrahydrothiophene and thietane. In all cases, 200 nm excitation leads to molecular fragmentation on an ultrafast (<100 fs) timescale, driven by the evolution of Rydberg-to-valence orbital character along the S-C stretching coordinate. The C-S-C bending angle was also found to be a key coordinate driving initial internal conversion through the excited state Rydberg manifold, although only small angular displacements away from the ground state equilibrium geometry are required. Conformational constraints imposed by the cyclic ring structures of tetrahydrothiophene and thietane do not therefore influence dynamical timescales to any significant extent. Through use of a high-intensity 267 nm probe, we were also able to detect the presence of some transient (bi)radical species. These are extremely short lived, but they appear to confirm the presence of two competing excited state fragmentation channels - one proceeding directly from the initially prepared 4p manifold, and one involving non-adiabatic population of the 4s state. This is in addition to a decay pathway leading back to the S0 electronic ground state, which shows an enhanced propensity in the 5-membered ring system tetrahydrothiophene over the other two species investigated.

Exploring the Electrochemistry of Iron Dithiolene and Its Potential for Electrochemical Homogeneous Carbon Dioxide Reduction.

In this work, the dithiolene complex iron(III) bis-maleonitriledithiolene [Fe(mnt)2] is characterised and evaluated as a homogeneous CO2 reduction catalyst. Electrochemically the Fe(mnt)2 is reduced twice to the trianionic Fe(mnt)2 3- state, which is correspondingly found to be active towards CO2. Interestingly, the first reduction event appears to comprise overlapping reversible couples, attributed to the presence of both a dimeric and monomeric form of the dithiolene complex. In acetonitrile Fe(mnt)2 demonstrates a catalytic response to CO2 yielding typical two-electron reduction products: H2, CO and CHOOH. The product distribution and yield were governed by the proton source. Operating with H2O as the proton source gave only H2 and CO as products, whereas using 2,2,2-trifluoroethanol gave 38 % CHOOH faradaic efficiency with H2 and CO as minor products.

A theoretical investigation of uranyl covalency via symmetry-preserving excited state structures.

Time dependent density functional theory (TDDFT) calculations have been performed on a series of symmetry-preserving excited states of the uranyl dication, UO22+. The simulated excited state electronic structures are compared to that of the ground state at both ground and excited state-optimised geometries. For the first time, the Quantum Theory of Atoms in Molecules (QTAIM) has been applied to the excited states electronic structures of uranyl in order to quantify the variation in bond covalency upon electronic excitation. QTAIM analysis of vertical excitations at the ground state geometry demonstrated an inverse relationship between the orbital mixing coefficient, λ, and the excitation energy. Furthermore, it was found that, for MOs with U 5f character, λ was more dependent on the metal-ligand Hamiltonian matrix element HML, whereas for those with U 6d character, λ became increasingly dependent on the difference in fragment orbital energy levels, ΔEML. Charge transfer from O to U reduced as the excitation energy increased, as did the degree of electron sharing between the centres. When considering the relaxed excited state geometries, a relationship between excitation energy and bond elongation was established, commensurate with the large magnitude of λ and its dependence on HML for MOs with U 5f character, and enhanced charge transfer otherwise.

Determination of two-photon absorption in nucleobase analogues: a QR-DFT perspective.

With the prevalence of fluorescence spectroscopy in biological systems, and the benefits of two-photon absorption techniques, presented here is an assessment of the two-photon accessibility of modern fluorescent nucleobase analogues utilising quadratic response DFT. Due to the complex environment experienced by these nucleobases, the two-photon spectra of each analogue has been assessed in the presence of both [Formula: see text]-stacked and hydrogen-bonding interactions involving the canonical nucleobases. Findings suggest that the [Formula: see text]-stacking environment provides a more significant effect on the spectra of the analogues studies than a hydrogen-bonding environment; analogue structures presenting high two-photon cross-section values for one or more states coincide with polycyclic extensions to preserved canonical base structure, as observed in the qA family of analogues, while analogue structures more closely resembling the structure of the base in question present a much more muted spectra in comparison. Results from this investigation have also allowed for the derivation of a number of design rules for the development of potential, two-photon specific, analogues for future use in both imaging and potential photochemical activation.

Steric control of sorting regimes in self-assembled cages.

Control of self-sorting regimes is achieved through adjustment of steric interactions in self-assembled coordination cages. The self-assembly regime of dynamic mixtures of heteroleptic cages is followed by HPLC to show that statistical or biased distributions can be selectively obtained, including isolation of a single heteroleptic species.

Systematic Investigation of the Molecular and Electronic Structure of Thorium and Uranium Phosphorus and Arsenic Complexes.

In continuing to examine the interaction of actinide-ligand bonds with soft donor ligands, a comparative investigation with phosphorus and arsenic was conducted. A reaction of (C5Me5)2AnMe2, An = Th, U, with 2 equiv of H2AsMes, Mes = 2,4,6-Me3C6H2, forms the primary bis(arsenido) complexes, (C5Me5)2An[As(H)Mes]2. Both exhibit thermal instability at room temperature, leading to the elimination of H2, and the formation of the diarsenido species, (C5Me5)2An(η2-As2Mes2). The analogous diphosphido complexes, (C5Me5)2An(η2-P2Mes2), could not be synthesized via the same route, even upon heating the bis(phosphido) species to 100 °C in toluene. However, they were accessible via the reaction of dimesityldiphosphane, MesP(H)P(H)Mes, with (C5Me5)2AnMe2 at 70 °C in toluene. When (C5Me5)2AnMe2 is reacted with 1 equiv of H2AsMes, the bridging µ2-arsinidiide complexes [(C5Me5)2An]2(µ2-AsMes)2 are formed. Upon reaction of (C5Me5)2UMe2 with 1 equiv of H2PMes, the phosphinidiide [(C5Me5)2U(µ2-PMes)]2 is isolated. However, the analogous thorium reaction leads to a phosphido and C-H bond activation of the methyl on the mesityl group, forming {(C5Me5)2Th[P(H)(2,4-Me2C6H2-6-CH2)]}2. The reactivity of [(C5Me5)2An(µ2-EMes)]2 was investigated with OPPh3 in an effort to produce terminal phosphinidene or arsinidene complexes. For E = As, An = U, a U(III) cation-anion pair [(C5Me5)2U(η2-As2Mes2)][(C5Me5)2U(OPPh3)2] is isolated. The reaction of [(C5Me5)2Th(µ2-AsMes)]2 with OPPh3 does not result in a terminal arsinidene but, instead, eliminates PPh3 to yield a bridging arsinidiide/oxo complex, [(C5Me5)2Th]2(µ2-AsMes)(µ2-O). Finally, the combination of [(C5Me5)2U(µ2-PMes)]2 and OPPh3 yields a terminal phosphinidene, (C5Me5)2U(═PMes)(OPPh3), featuring a short U-P bond distance of 2.502(2) Å. Electrochemical measurements on the uranium pnictinidiide complexes demonstrate only a 0.04 V difference with phosphorus as a slightly better donor. Magnetic measurements on the uranium complexes show more excited-state mixing and therefore higher magnetic moments with the arsenic-containing compounds but no deviation from uncoupled U(IV) behavior. Finally, a quantum theory of atoms in molecules analysis shows highly polarized actinide-pnictogen bonds with similar bonding characteristics, supporting the electrochemical and magnetic measurements of similar bonding between actinide-phosphorus and actinide-arsenic bonds.

Theoretical determination of two-photon absorption in biologically relevant pterin derivatives.

Given the prevalence of fluorescence spectroscopy in biological systems, and the prevalence of pterin derivatives throughout biological systems, presented here is an assessment of the two-photon absorption spectroscopy as it applies to a range of the most commonly studied pterin derivatives. QR-CAMB3LYP//ccpVTZ calculations suggest that the use of two-photon spectroscopic methods would enable a more capable differentiation between closely related derivatives in comparison to the one-photon spectra, which show minimal qualitative deviation. Study of short tail derivatives shows that, in most cases, two-photon accessible states solely involve the π* LUMO as the particle orbital, with biopterin, neopterin, and 6-(hydroxymethyl)pterin presenting exceptional potential for targetting. Investigation of derivatives in which the tail contains an aromatic ring resulted in the observation of a series of two-photon accessible states involving charge transfer from the tail to the pterin moiety, the cross sections of which are highly dependent on the adoption of a planar geometry. The observation of these states presents a novel method for tracking the substitution of biologically important molecules such as folic acid and 5-methenyltetrahydrofolylpolyglutamate.

Targeted photoredox catalysis in cancer cells.

Hypoxic tumours are a major problem for cancer photodynamic therapy. Here, we show that photoredox catalysis can provide an oxygen-independent mechanism of action to combat this problem. We have designed a highly oxidative Ir(III) photocatalyst, [Ir(ttpy)(pq)Cl]PF6 ([1]PF6, where 'ttpy' represents 4'-(p-tolyl)-2,2':6',2''-terpyridine and 'pq' represents 3-phenylisoquinoline), which is phototoxic towards both normoxic and hypoxic cancer cells. Complex 1 photocatalytically oxidizes 1,4-dihydronicotinamide adenine dinucleotide (NADH)-an important coenzyme in living cells-generating NAD• radicals with a high turnover frequency in biological media. Moreover, complex 1 and NADH synergistically photoreduce cytochrome c under hypoxia. Density functional theory calculations reveal π stacking in adducts of complex 1 and NADH, facilitating photoinduced single-electron transfer. In cancer cells, complex 1 localizes in mitochondria and disrupts electron transport via NADH photocatalysis. On light irradiation, complex 1 induces NADH depletion, intracellular redox imbalance and immunogenic apoptotic cancer cell death. This photocatalytic redox imbalance strategy offers a new approach for efficient cancer phototherapy.

Stress Tensor Eigenvector Following with Next-Generation Quantum Theory of Atoms in Molecules: Excited State Photochemical Reaction Path from Benzene to Benzvalene.

In this investigation, we considered both the scalar and 3-D vector-based measures of bonding using next generation quantum theory of atoms in molecules (QTAIM), constructed from the preferred direction of electronic charge density accumulation, to better understand the photochemical reaction associated with of the formation of benzvalene from benzene. The formation of benzvalene from benzene resulted in two additional C-C bonds forming compared with the benzene. The creation of the additional C-C bonds was explained in terms of an increasing the favorability of the reaction process by maximizing the bonding density. The topological instability of the benzvalene structure was determined using the scalar and vector-based measures to explain the short chemical half-life of benzvalene in terms of the competition between the formation of unstable new C-C bonding that also destabilizes nearest neighbor C-C bonds. The explosive character of benzvalene is indicated by the unusual tendency of the C-C bonds to rupture as easily as weak bonding. The topological instability of the short strong C-C bonds was explained by the existence of measures from conventional and next generation QTAIM that previously have only been observed in weak interactions; such measures included twisted 3-D bonding descriptors.

Organoiridium Photosensitizers Induce Specific Oxidative Attack on Proteins within Cancer Cells.

Strongly luminescent iridium(III) complexes, [Ir(C,N)2 (S,S)]+ (1) and [Ir(C,N)2 (O,O)] (2), containing C,N (phenylquinoline), O,O (diketonate), or S,S (dithione) chelating ligands, have been characterized by X-ray crystallography and DFT calculations. Their long phosphorescence lifetimes in living cancer cells give rise to high quantum yields for the generation of 1 O2 , with large 2-photon absorption cross-sections. 2 is nontoxic to cells, but potently cytotoxic to cancer cells upon brief irradiation with low doses of visible light, and potent at sub-micromolar doses towards 3D multicellular tumor spheroids with 2-photon red light. Photoactivation causes oxidative damage to specific histidine residues in the key proteins in aldose reductase and heat-shock protein-70 within living cancer cells. The oxidative stress induced by iridium photosensitizers during photoactivation can increase the levels of enzymes involved in the glycolytic pathway.