Computational-based investigation of antioxidative potential polyphenolic compounds of Salvia officinalis L.: combined DFT and molecular docking approaches.

CONTEXT: The antioxidant properties of the three polyphenolic compounds (carnosol, cirsiliol, and luteolin) of Salvia officinalis L. were investigated employing the density functional theory (DFT) calculations at the B3LYP of basis set at 6-311 + + G (d, p) in order to evaluate their antioxidant activity. The enthalpies of reactions associated with the SET-PT, SPLET, and HAT mechanisms were analyzed in gas and in different solvents using the CPCM (conductor-like polarizable continuum) model. For all possible hydrogen donor sites, the corresponding parameters (BDE, AIP, PDE, PA, ETE, HOMOs, and LUMOs) and reactivity indices (IPE, EA, Χ, η, S, and ω) were also evaluated. The calculated results showed that derivatives 12-OH, 11-OH, 4'-OH, and 3'-OH had the lowest antioxidant activity. The results showed as well that carnosol, cirsiliol, and luteolin have higher reactivity compared to ascorbic acid and could be considered better antioxidants. According to research, the catechol group is crucial in influencing the studied compounds antioxidant activity. The theoretically predicted order of antioxidant efficiencies in this work agrees well with the QSAR (quantitative structure-activity relationship) data. The findings show that in the vacuum as well as benzene media. HAT would be the most effective mechanism; in contrast, the thermodynamic equilibrium approach in polar media is the SPLET mechanism. Likewise, the outcomes of the docking modeling confirm that the selected molecules have high inhibitory activity to glutathione-S-transferases (GSTs) receptors. Moreover, they have very important pharmacokinetic, chemical, and biological profiles. Finally, all the results show that the three natural molecules have good pharmacokinetic profiles, particularly the bioavailability and permeability toward biological membranes. METHODS: The software packages used in this investigation are Gaussian 16, Discovery studio Visualizer, and AutoDock vina. The three compounds (carnosol, cirsiliol, and luteolin) of Salvia officinalis L. were optimized with DFT/B3LYP of basis set at 6-311 + + G (d, p). The optimized structures were established via vibrational analysis (i.e., no imaginary frequencies in the frequency set). All enthalpies were zero-point (ZPE) corrected. Vibrational frequency calculations were performed at 298.15 K and 1 atmosphere pressure to determine the thermodynamic characteristics of the investigated reactions. The descriptors were associated with the antioxidant mechanisms for investigated molecules in vacuum and in various solvents. The molecular docking was used by AutoDock vina to estimate and evaluate the title compounds compatibility as potential antioxidant drugs utilizing appropriate receptor proteins. The solvation effect in the medium of benzene (ɛ = 2.27) and water (ɛ = 78.39) was taken into account. Furthermore, a methanol solvent (ɛ = 32.61) was also taken into consideration to compare with the empirical data.

CNN pincer ruthenium catalysts for hydrogenation and transfer hydrogenation of ketones: experimental and computational studies.

Reaction of [RuCl(CNN)(dppb)] (1-Cl) (HCNN=2-aminomethyl-6-(4-methylphenyl)pyridine; dppb=Ph2 P(CH2 )4 PPh2 ) with NaOCH2 CF3 leads to the amine-alkoxide [Ru(CNN)(OCH2 CF3 )(dppb)] (1-OCH2 CF3 ), whose neutron diffraction study reveals a short RuO⋅⋅⋅HN bond length. Treatment of 1-Cl with NaOEt and EtOH affords the alkoxide [Ru(CNN)(OEt)(dppb)]⋅(EtOH)n (1-OEt⋅n EtOH), which equilibrates with the hydride [RuH(CNN)(dppb)] (1-H) and acetaldehyde. Compound 1-OEt⋅n EtOH reacts reversibly with H2 leading to 1-H and EtOH through dihydrogen splitting. NMR spectroscopic studies on 1-OEt⋅n EtOH and 1-H reveal hydrogen bond interactions and exchange processes. The chloride 1-Cl catalyzes the hydrogenation (5 atm of H2 ) of ketones to alcohols (turnover frequency (TOF) up to 6.5×10(4) h(-1) , 40 °C). DFT calculations were performed on the reaction of [RuH(CNN')(dmpb)] (2-H) (HCNN'=2-aminomethyl-6-(phenyl)pyridine; dmpb=Me2 P(CH2 )4 PMe2 ) with acetone and with one molecule of 2-propanol, in alcohol, with the alkoxide complex being the most stable species. In the first step, the Ru-hydride transfers one hydrogen atom to the carbon of the ketone, whereas the second hydrogen transfer from NH2 is mediated by the alcohol and leads to the key "amide" intermediate. Regeneration of the hydride complex may occur by reaction with 2-propanol or with H2 ; both pathways have low barriers and are alcohol assisted.

Formation of P-C bonds under unexpectedly mild conditions. Phosphoryl migration and metal coordination of diphenylphosphinomethyl-oxazolines and -thiazolines.

The heterocycles 2-methyl-2-oxazoline (mox) and 2-methyl-2-thiazoline (mth) react with Ph2PCl under mild conditions, in the presence of NEt3 which promotes their phosphorylation by stabilization of their enamino tautomers mox(e) and mth(e), respectively, and which also behaves as HCl scavenger. Depending on the reaction conditions, three different phosphine ligands were obtained in good yields from mox: the monophosphine Ph2PCH2C=NCH2CH2O (1ox) and the isomeric diphosphines Ph2PCH=COCH2CH2NPPh2 (2ox) (X-ray structure) and (Ph2P)2CHC=NCH2CH2O (3ox). The formation of these ligands involves phosphoryl migration reactions, which were studied by NMR spectroscopy. The synthesis and the X-ray structures of the corresponding diphenylphosphinothiazolines Ph2PCH2C=NCH2CH2S (1th) and Ph2CH=CSCH2CH2NPPh2 (2th) are also reported but the thiazoline analog of the geminal diphosphine 3ox was not observed. The metal complexes [Pt(3ox-H)2] x 4 CH2Cl2 (4 x 4 CH2Cl2), [Pt(Me)I(1ox)] (5), [Pt(Me)2(1ox)] (7), [Pd(dmba-C,N)(1th)]OTf x 0.25 Et2O (8 x 0.25 Et2O), [Pd(dmba-C,N)(1th-H)] (9), and [9 x {Pd(dmba-C,N)Cl}] x 2.5 C6H6 (10 x 2.5 C6H6) have been prepared and structurally characterized by X-ray diffraction.

Investigations on a novel silyl transfer reaction in heterodimetallic chemistry.

Heterodinuclear silyl complexes of the type [(OC)3(R3Si)[Fe(mu-PPh2)Pt](CO)(PPh3)], which contain a [Fe(mu-P)Pt] triangular core, were previously reported to undergo an unprecedented dyotropic-type rearrangement involving migration of the silyl group from iron to platinum with concomitant 1,2 migration of CO from Pt to Fe. In the resulting complexes of formula [(OC)4[Fe(mu-PPh2)Pt](SiR3)(PPh3)], the Si atom occupies a cis position at the planar Pt center with respect to the phosphido bridge. DFT calculations were employed to elucidate the mechanism of this intramolecular silyl migration reaction. When the Fe-Pt precursor complex is [(OC)3(R3Si)[Fe(mu-PPh2)Pt](PPh3)2], the reaction sequence involves (i) the substitution of PPh3 by CO at Pt, (ii) the concerted migration of CO and SiR3, and (iii) the cis-trans isomerization at Pt. The calculations support the exergonic character of the overall process. An explanation for the experimental observation of only one product isomer being formed is possible via frontier molecular orbital analysis. Consistent with the experimental findings, the transition states of the migration (a species with a triply bridged intermetallic bond) and isomerization steps were found to be energetically within reach at room temperature. Additional support for the suggested mechanism also comes from the fact that relative silyl migration activities could be rationalized by the means of quantum chemistry.

Trapping a pseudo-Hofmann rearrangement on a ruthenium cluster.

In the clusters [Ru3(micro(3)-NPPh(3))(micro(3)-OSiMe(3))(micro-X)(micro(C,O)-OC[double bond]NPPh(3))(micro-CO)(CO)6] (X = NCO, 2; X = Cl, 3), which were prepared by a pyrolytic reaction of Ph(3)PNSiMe(3) with Ru(3)(CO)12, the ligands result from a cluster-mediated pseudo-Hofmann rearrangement involving the micro-NCO, micro(C,O)-Ph(3)P[double bond]N-CO and micro(3)-NPPh(3) fragments.

Intra- and inter-molecular phosphoryl migration in phosphinothiazolines; precursors to polynuclear complexes and bimetallic coordination polymers.

Two tautomers of the new phosphinoaminothiazoline Ph2PNHC=NCH2CH2S, obtained from the reaction of 2-amino-2-thiazoline (ATHZ) with Ph(2)PCl, have been structurally characterized and the intermediate formation of the diphosphine Ph2PN=CN(PPh2)CH2CH2S has been demonstrated experimentally and by DFT calculations; reacts with [AuCl(THT)] to give [(AuCl)2] whereas the bidentate metalloligand cis-[Pt(1(-H))2] reacts with AgOTf to form the Ag-Pt coordination polymer [Ag(infinity)[Pt(1(-H))2](infinity)](OTf)(infinity).