Local force constants and charges of the nitrosyl ligand in photoinduced NO linkage isomers in a prototypical ruthenium nitrosyl complex.

Photoinduced linkage isomers (PLI) of the NO ligand in transition-metal nitrosyl compounds can be identified by vibrational spectroscopy due to the large shifts of the (NO) stretching vibration. We present a detailed experimental and theoretical study of the prototypical compound K2[RuCl5NO], where (NO) shifts by ≈150 cm-1 when going from the N-bound (κN) ground state (GS) to the oxygen-bound (κO) metastable linkage isomer MS1, and by ≈360 cm-1 when going to the side-on (κ2N,O) metastable linkage isomer MS2. We show that the experimentally observed N-O stretching modes of the GS, MS1, and MS2 exhibit strong coupling with the Ru-N and Ru-O stretching modes, which can be decoupled using the local mode vibrational theory formalism. From the resulting decoupled pure two-atomic harmonic oscillators the local force constants are determined, which all follow the same quadratic behavior on the wavenumber. A Bader charge analysis shows that the total charge on the NO ligand is not correlated to the observed frequency shift of (NO).

Interrelations between Linkage Isomers of an Efficient Square-planar Nickel(II) Nitrite Photoswitch in the Solid State.

An efficient nitrite nickel(II) photoswitch, with the 1-phenyl-2-hydroxyimino-3-[(2'-dimethylamino)ethyl]imino-1-propanone moiety used as the ancillary ligand, is reported. In the ground-state ('dark') crystal structure, the studied compound exists predominantly as the nitro-(η1 -N(O)2 ) isomer, however, traces of the exo- and endo-nitrito-(η1 -ONO) forms are detected both at 100 K (4-5 % each) and under ambient conditions (~9 % each). When excited with the 405-530 nm LED light, the nitro-to-nitrito isomerization takes place. The total conversion exceeds 90 %. The exo-nitrito linkage isomer constitutes the dominant photo-generated form, whereas the relative population of both nitrito species depends on temperature. The reaction is fully reversible and reproducible. The photo-products are stable up to 200 K. The system constitutes a good model case for the reaction mechanism studies. Thus, experimental and theoretical investigations on the photo-isomerism were conducted and are presented in detail. Eventually, the nitro→exo-nitrito→endo-nitrito reaction pathway is proposed.

Humoral Immune Responses in Patients with Severe COVID-19: A Comparative Pilot Study between Individuals Infected by SARS-CoV-2 during the Wild-Type and the Delta Periods.

Since the onset of the COVID-19 pandemic, humanity has experienced the spread and circulation of several SARS-CoV-2 variants that differed in transmissibility, contagiousness, and the ability to escape from vaccine-induced neutralizing antibodies. However, issues related to the differences in the variant-specific immune responses remain insufficiently studied. The aim of this study was to compare the parameters of the humoral immune responses in two groups of patients with acute COVID-19 who were infected during the circulation period of the D614G and the Delta variants of SARS-CoV-2. Sera from 48 patients with acute COVID-19 were tested for SARS-CoV-2 binding and neutralizing antibodies using six assays. We found that serum samples from the D614G period demonstrated 3.9- and 1.6-fold increases in RBD- and spike-specific IgG binding with wild-type antigens compared with Delta variant antigens (p < 0.01). Cluster analysis showed the existence of two well-separated clusters. The first cluster mainly consisted of D614G-period patients and the second cluster predominantly included patients from the Delta period. The results thus obtained indicate that humoral immune responses in D614G- and Delta-specific infections can be characterized by variant-specific signatures. This can be taken into account when developing new variant-specific vaccines.

Iridium Complexes with BIAN-Type Ligands: Synthesis, Structure and Redox Chemistry.

A series of iridium complexes with bis(diisopropylphenyl)iminoacenaphtene (dpp-bian) ligands, [Ir(cod)(dpp-bian)Cl] (1), [Ir(cod)(NO)(dpp-bian)](BF4)2 (2) and [Ir(cod)(dpp-bian)](BF4) (3), were prepared and characterized by spectroscopic techniques, elemental analysis, X-ray diffraction analysis and cyclic voltammetry (CV). The structures of 1-3 feature a square planar backbone consisting of two C = C π-bonds of 1,5-cyclooctadiene (cod) and two nitrogen atoms of dpp-bian supplemented with a chloride ion (for 1) or a NO group (for 2) to complete a square-pyramidal geometry. In the nitrosyl complex 2, the Ir-N-O group has a bent geometry (the angle is 125°). The CV data for 1 and 3 show two reversible waves between 0 and -1.6 V (vs. Ag/AgCl). Reversible oxidation was also found at E1/2 = 0.60 V for 1. Magnetochemical measurements for 2 in a range from 1.77 to 300 K revealed an increase in the magnetic moment with increasing temperature up to 1.2 µB (at 300 K). Nitrosyl complex 2 is unstable in solution and loses its NO group to yield [Ir(cod)(dpp-bian)](BF4) (3). A paramagnetic complex, [Ir(cod)(dpp-bian)](BF4)2 (4), was also detected in the solution of 2 as a result of its decomposition. The EPR spectrum of 4 in CH2Cl2 is described by the spin Hamiltonian H = gßHS with S = 1/2 and gxx = gyy = 2.393 and gzz = 1.88, which are characteristic of the low-spin 5d7-Ir(II) state. DFT calculations were carried out in order to rationalize the experimental results.

Antigenic Cartography Indicates That the Omicron BA.1 and BA.4/BA.5 Variants Remain Antigenically Distant to Ancestral SARS-CoV-2 after Sputnik V Vaccination Followed by Homologous (Sputnik V) or Heterologous (Comirnaty) Revaccination.

The rapid emergence of evasive SARS-CoV-2 variants is an ongoing challenge for COVID-19 vaccinology. Traditional virus neutralization tests provide detailed datasets of neutralization titers against the viral variants. Such datasets are difficult to interpret and do not immediately inform of the sufficiency of the breadth of the antibody response. Some of these issues could be tackled using the antigenic cartography approach. In this study, we created antigenic maps using neutralization titers of sera from donors who received the Sputnik V booster vaccine after primary Sputnik V vaccination and compared them with the antigenic maps based on serum neutralization titers of Comirnaty-boosted donors. A traditional analysis of neutralization titers against the WT (wild-type), Alpha, Beta, Delta, Omicron BA.1, and BA.4/BA.5 variants showed a significant booster humoral response after both homologous (Sputnik V) and heterologous (Comirnaty) revaccinations against all of the studied viral variants. However, despite this, a more in-depth analysis using antigenic cartography revealed that Omicron variants remain antigenically distant from the WT, which is indicative of the formation of insufficient levels of cross-neutralizing antibodies. The implications of these findings may be significant when developing a new vaccine regimen.

Photogeneration of Several Linkage Isomers and Investigation of Forward and Backward Nitro-Nitrito Isomerization Processes in a Palladium Complex.

Photoinduced linkage isomers (PLIs) of the nitro-ligand were generated and comprehensively characterized in a square planar unit [Pd(NH3)3NO2]+ of the complex salts [Pd(NH3)4][Pd(NH3)3NO2][MOx3]·yH2O (M = Cr (Cr), Rh (Rh), Co (Co), Ox = oxalate). Structural (XRD) and spectroscopic (IR, UV-vis) investigations at 10 and 150 K allowed determining the structures of several photoinduced linkage isomers, endo-ONO (PLI1, 2) and exo-ONO (PLI3, 4) isomers generated by irradiation with 365 nm from the initial NO2 (GS), along with the assignment of the infrared (IR) bands to each structural isomer. Based on a combination of these methods, the photo- and thermally induced interplay of PLIs was investigated. Irradiation in the temperature range of 10-80 K induces the formation of both endo- and exo-ONO isomers, while increasing the temperature up to 150 K results in the formation of only endo-ONO isomers. The structural arrangement of the endo-ONO and exo-ONO PLI is strongly influenced by intermolecular interactions due to the partial occupation of a neighboring site by water molecules. The investigation of thermal dynamics of PLIs revealed that the thermal decay of the exo-ONO isomer occurs via two steps exo-ONO → endo-ONO → NO2. The kinetic parameters (Ea, k0) of both decay processes were determined together with the characteristic decay temperatures (Td) by IR spectroscopy. According to the photoinduced dynamics measured by IR spectroscopy, the mechanism of PLI formation in [Pd(NH3)3NO2]+ could be described as NO2 → endo-ONO → exo-ONO.

Bismuth and antimony halometalates containing photoswitchable ruthenium nitrosyl complexes.

The first examples of Bi(III) and Sb(III) halide compounds combined with a photoswitchable ruthenium nitrosyl unit are reported. The structures of [RuNOPy4Br]4[Sb2Br8][Sb3Br12]2 (1) and (H3O)[RuNOPy4Br]4[Bi2Br9]3·3H2O (2) were determined by X-ray diffraction, and exhibit three different structural types of group 15 halometalates. Low-temperature IR-spectroscopy measurements reveal that the irradiation of 1 at 365 nm switches a stable Ru-NO (GS) unit to a metastable Ru-ON (MS1) linkage. Moreover, the light excitation of 2 at 365 or 405 nm induces the additional formation of a side-bond isomer Ru-η2-(NO) (MS2). The reverse reactions MS1/MS2 → GS can be induced by red-infrared light irradiation or by heating at temperatures >200 K. The obtained synthetic and spectroscopic data open the way for the preparation of hybrid halide complexes with a variety of photoswitchable complexes (NO2, SO2, N2, etc.), and give an insight into the behavior of light-induced species embedded in polynuclear halides.

Anti-Ad26 humoral immunity does not compromise SARS-COV-2 neutralizing antibody responses following Gam-COVID-Vac booster vaccination.

Replication-incompetent adenoviral vectors have been extensively used as a platform for vaccine design, with at least four anti-COVID-19 vaccines authorized to date. These vaccines elicit neutralizing antibody responses directed against SARS-CoV-2 Spike protein and confer significant level of protection against SARS-CoV-2 infection. Immunization with adenovirus-vectored vaccines is known to be accompanied by the production of anti-vector antibodies, which may translate into reduced efficacy of booster or repeated rounds of revaccination. Here, we used blood samples from patients who received an adenovirus-based Gam-COVID-Vac vaccine to address the question of whether anti-vector antibodies may influence the magnitude of SARS-CoV-2-specific humoral response after booster vaccination. We observed that rAd26-based prime vaccination with Gam-COVID-Vac induced the development of Ad26-neutralizing antibodies, which persisted in circulation for at least 9 months. Our analysis further indicates that high pre-boost Ad26 neutralizing antibody titers do not appear to affect the humoral immunogenicity of the Gam-COVID-Vac boost. The titers of anti-SARS-CoV-2 RBD IgGs and antibodies, which neutralized both the wild type and the circulating variants of concern of SARS-CoV-2 such as Delta and Omicron, were independent of the pre-boost levels of Ad26-neutralizing antibodies. Thus, our results support the development of repeated immunization schedule with adenovirus-based COVID-19 vaccines.

Solid-State Photo-NMR Study on Light-Induced Nitrosyl Linkage Isomers Uncovers Their Structural, Electronic, and Diamagnetic Nature.

A light-induced linkage NO isomer (MS1) in trans-[Ru(15NO)(py)419F](ClO4)2 is detected and measured for the first time by solid-state MAS NMR. Chemical shift tensors of 15N and 19F, along with nJ(15N-19F) spin-spin couplings and T1 relaxation times of MS1, are compared with the ground state (GS) at temperatures T < 250 K. Isotropic chemical shifts (15N and 19F) are well resolved for two crystallographically independent cations (A and B) [Ru(15NO)(py)419F]2+, allowing to define separately both populations of MS1 isomers and thermal decay rates for two structural sites. The relaxation times T1 of 19F in the case of GS (30/38.6 s for sites A/B) and MS1 (11.6/11.8 s for sites A/B) indicate that both isomers are diamagnetic, which is the first experimental evidence of diamagnetic properties of MS1 in ruthenium nitrosyl. After light irradiation (λ = 420 nm), the NO ligand rotates by nearly 180° from F-Ru-N-O to F-Ru-O-N, whereby the isotropic chemical shifts of δiso(15N) increase and those of δiso(19F) decrease. The nJ(15N-19F) couplings increase from 2J(15N-Ru-19F)GS = 71 Hz to 3J(15N-O-Ru-19F)MS1 = 105 Hz. These results are interpreted on the basis of DFT-CASTEP calculations including Bader-, Mulliken-, and Hirshfeld-charge density distributions of both states.

Nitric oxide release and related light-induced cytotoxicity of ruthenium nitrosyls with coordinated nicotinate derivatives.

The synthetic approaches for the preparation of trans(NO,OH)-cis(NO2,NO2)-[RuNO(L)2(NO2)2OH], where L = ethyl nicotinate (I) and methyl nicotinate (II), are reported. The structures of the complexes are characterized by X-ray diffraction and analyzed by Hirshfeld surface analysis. Both compounds show a nitric oxide release reaction under 445 or 532 nm irradiation of dimethyl sulfoxide (DMSO) solutions, which is studied by combined ultraviolet-visible- (UV-vis), infrared- (IR), and electron paramagnetic resonance (EPR) spectroscopy and density functional theory (DFT) calculations. The charge transfer from the OH-Ru-NO chain and nitrite ligands to the antibonding orbitals of Ru-NO is responsible for the photo-cleavage of the ruthenium-nitrosyl bond. The elimination of NO leads to a side reaction, namely the protonation of the parent hydroxyl compound. The cytotoxicity and photo-induced cytotoxicity investigations of both compounds on the breast adenocarcinoma cell line MCF-7 reveal that (I) and (II) are cytotoxic with IC50 values of 27.5 ± 2.8 µM and 23.3 ± 0.3 µM, respectively. Moreover, (I) shows an increase of the toxicity after light irradiation by 7 times (IC50 = 4.1 ± 0.1), which makes it a prominent target for deeper biological investigations.

Photoinduced linkage isomers in a model ruthenium nitrosyl complex: Identification and assignment of vibrational modes.

Photoinduced NO-linkage isomers were investigated in the solid state of labelled trans-[Ru(14/15NO)(py4)F](ClO4)2 complex by combined IR-spectroscopy and DFT calculations. Based on the experimental data and the DFT calculations of this isotopically labelled 14/15NO nitrosyl compound, we present a complete assignment of the vibrational bands of three nitrosyl linkage isomers in a range from 4000 to 200 cm-1. The calculated IR-spectra match well with the experimental data allowing reliable assignment of the vibrational bands. The structural change from the Ru-NO (GS) to the Ru-ON (MS1) and Ru-η2-(NO) (MS2) linkage configuration leads to the downshift of the ν(NO) and ν(Ru-(NO)) bands, and a corresponding increase of the energy of the ν(Ru-F) band. The shift of the bands corresponds to the change of the Ru-(NO) and Ru-F bond lengths: increase of the Ru-(NO) bond length leads to the decrease of the energy of the ν(Ru-(NO)) band; decrease of the Ru-F bond length leads to the increase of the energy of the ν(Ru-F) band. These observations can be extrapolated to the family of related nitrosyl complexes and therefore be used for the qualitative prediction of the Ru-(NO) and Ru-Ltrans-to-NO bond lengths of different linkage isomers in the framework of one complex. While the formation of linkage isomers is a reversible process, long-time irradiation sometimes induces irreversible reactions such as the release of NO. Here, we show that the photolysis of trans-[Ru(14/15NO)(py4)F](ClO4)2 in KBr pellets may lead to the release of nitrous oxide N2O, conceivably through the formation of a {Ru-(κ2-ONNO)} intermediate.

Remarkable thermal stability of light-induced Ru-ON linkage isomers in mixed salts of a ruthenium amine complex with a trans-ON-Ru-F coordinate.

Two new complexes trans-(H3O)[RuNO(NH3)4F](NO3)1.5F1.5·0.5H2O (I) and trans-[RuNO(NH3)4F](ClO4)Cl (II) are synthesized and characterized by single crystal X-ray diffraction. The complexes crystallized in the centrosymmetric space groups I4/m and P21/n due to specific intermolecular interactions; the strongest ones are represented by N-HO contacts. The irradiation of the complexes in the blue-light range induces the formation of Ru-ON isomers (MS1), determined by IR spectroscopy and differential scanning calorimetry (DSC). The subsequent excitation of MS1 by infrared light induces the formation of Ru-(η2-(NO)) (MS2) isomers, confirmed by the same techniques. Using combined IR and DSC analysis, the activation barriers (Ea) and frequency factors (lg k0) of the MS1 → GS and MS2 → GS reactions are determined. According to the kinetic parameters, the calculated lifetimes (k-1) of MS1 at 300 K are 33 and 178 min for I and II, respectively. To the best of our knowledge, the thermal stability of MS1 in II is the highest among known related complexes. The thermal stability of MS2 was found to be lower (the lifetimes are 0.12 and 0.02 s at 300 K for I and II, respectively), which is characteristic of these states. The high thermal stability of MS1 can be applied for the design of photochromic materials and to generally facilitate the investigation of the states.

Photoinduced inhibition of DNA repair enzymes and the possible mechanism of photochemical transformations of the ruthenium nitrosyl complex [RuNO(ß-Pic)2(NO2)2OH].

In this work we have demonstrated that the ruthenium nitrosyl complex [RuNO(ß-Pic)2(NO2)2OH] is suitable for investigation of the inactivation of DNA repair enzymes in vitro. Photoinduced inhibition of DNA glycosylases such as E. coli Endo III, plant NtROS1, mammalian mNEIL1 and hNEIL2 occurs to an extent of ≥90% after irradiation with the ruthenium complex. The photophysical and photochemical processes of [RuNO(ß-Pic)2(NO2)2OH] were investigated using stationary and time-resolved spectroscopy, and mass spectrometry. A possible mechanism of the photo-processes was proposed from the combined spectroscopic study and DTF calculations, which reveal that the photolysis is multistage. The primary and secondary photolysis stages are the photo-induced cleavage of the Ru-NO bond with the formation of a free nitric oxide and RuIII complex followed by ligand exchange with solvent. For E. coli Endo III, covalent interaction with the photolysis product was confirmed by UV-vis and mass spectrometric methods.

Room-Temperature Photogeneration of Nitrosyl Linkage Isomers in Ruthenium Nitrosyl Complexes.

The conditions for the photogeneration of NO linkage isomers at room temperature are studied. By pulsed laser irradiation in the blue spectral range, the long-lived Ru-ON isomer can be generated at room temperature, which is crucial for potential applications, such as holography and data storage. By using static and time-resolved spectroscopy (UV/Vis and IR), we give evidence that the liftime of the Ru-(η2 -(NO)) isomer is a decisive parameter for the formation of the Ru-ON isomer at high temperature owing to a two-step isomerization mechanism Ru-NO→Ru-(η2 -(NO))→Ru-ON. Furthermore, we report the low-temperature structures for each isomer, which were revealed by photocrystallography.

Combining photoinduced linkage isomerism and nonlinear optical properties in ruthenium nitrosyl complexes.

The complex trans-[RuNO(NH3)4F]SiF6 was synthesized in quantitative yield and the structure was characterized by X-ray diffraction and spectroscopic methods. The complex crystallizes in the non-centrosymmetric space group Pn. Hirshfeld surface analysis revealed that the dominant intermolecular interactions are of types H...F and F...O, which are likely to be responsible for the packing of the molecules in a non-centrosymmetric structure. Irradiation with blue light leads to the formation of Ru-ON (metastable state MS1) and Ru-η2-(NO) (metastable state MS2) bond isomers, as shown by IR and UV-Vis spectroscopy. The structural features of the MS1 isomer were elucidated by photocrystallography. The complex exhibits exceptionally good thermal stability of the metastable state MS1, such that it can be populated by light at 290-300 K, which is important for potential applications. The second harmonic (SH) emission can be generated by femtosecond-pulsed irradiation of the complex. The generated SH is rather efficient and stable under long-term exposure. Finally, since both metastable states and harmonic generation can be generated at room temperature, an attempt to drive the SH response by photoisomerization of the nitrosyl ligand was made and is discussed.