Comparing intestinal versus diffuse gastric cancer using a PEFF-oriented proteomic pipeline.

Gastric cancer is the fifth most common malignant neoplasia and the third leading cause of cancer death worldwide. Mac-Cormick et al. recently showed the importance of considering the anatomical region of the tumor in proteomic gastric cancer studies; more differences were found between distinct anatomical regions than when comparing healthy versus diseased tissue. Thus, failing to consider the anatomical region could lead to differential proteins that are not disease specific. With this as motivation, we compared the proteomic profiles of intestinal and diffuse adenocarcinoma from the same anatomical region, the corpus. To achieve this, we used isobaric labeling (iTRAQ) of peptides, a 10-step HILIC fractionation, and reversed-phase nano-chromatography coupled online with a Q-Exactive Plus mass spectrometer. We updated PatternLab to take advantage of the new Comet-PEFF search engine that enables identifying post-translational modifications and mutations included in neXtProt's PSI Extended FASTA Format (PEFF) metadata. Our pipeline then uses a text-mining tool that automatically extracts PubMed IDs from the proteomic result metadata and drills down keywords from manuscripts related with the biological processes at hand. Our results disclose important proteins such as apolipoprotein B-100, S100 and 14-3-3 proteins, among many others, highlighting the different pathways enriched by each cancer type. SIGNIFICANCE: Gastric cancer is a heterogeneous and multifactorial disease responsible for a significant number of deaths every year. Despite the constant improvement of surgical techniques and multimodal treatments, survival rates are low, mostly due to limited diagnostic techniques and late symptoms. Intestinal and diffuse types of gastric cancer have distinct clinical and pathological characteristics; yet little is known about the molecular mechanisms regulating these two types of gastric tumors. Here we compared the proteomic profile of diffuse and intestinal types of gastric cancer from the same anatomical location, the corpus, from four male patients. This methodological design aimed to eliminate proteomic variations resulting from comparison of tumors from distinct anatomical regions. Our PEFF-tailored proteomic pipeline significantly increased the identifications as when compared to previous versions of PatternLab.

[Learning curve and iatrogenic injuries in laparoscopic cholecystectomies]. / Curva de aprendizado e lesões iatrogênicas em colecistectomias videolaparoscópicas.

OBJECTIVE: The aim of this study is to analyze surgeon's proficiency, based on the different aspects of his learning curve as a risk factor for iatrogenic biliary tract injuries associated with Laparoscopic Cholecystectomy. METHODS: a retrospective study was conducted using the report information from charts of patients January 1992 through December 2007; at Hospital Universitário Clementino Fraga Filho da Universidade Federal do Rio de Janeiro. Analysis from data collected from charts of 2285 patients who had undergone laparoscopic cholecystectomies. Data from surgeons involved with this type of surgery was also analyzed. RESULTS: a total of six injuries (0.26%) were found. This result is similar to that found in international publications. All injuries had occurred in the surgeon's second phase of the learning curve with more than 50 video surgeries. CONCLUSION: it was conclude that Video surgery Certificate and previous training are not related to biliary tract injuries in this series. Surgeon's age was not a risk factor in this study. There was statistical significance between surgeons' experience and injuries.