PFstats: A Network-Based Open Tool for Protein Family Analysis.

PFstats is a software developed for the extraction of useful information from protein multiple sequence alignments. By analyzing positional conservation and residue coevolution networks, the software allows the identification of structurally and functionally important residue groups and the discovery of probable functional subclasses. Furthermore, it contains tools for the identification of the possible biological significance of these findings. PFstats contains methods for maximizing the significance of alignments through filtering and weighting, residue conservation and coevolution analysis, automatic UniprotKb queries for residue-position annotation and many possible data visualization methods.

Preconcentration and determination of copper in tobacco leaves samples by using a minicolumn of sisal fiber (Agave sisalana) loaded with Alizarin fluorine blue by FAAS.

In the present study, a minicolumn of sisal fiber loaded with alizarin fluorine blue is proposed as a preconcentration system for copper determination in tobacco leaf samples by flame atomic absorption spectrometry. During the optimization procedure, a two level full factorial design (2(4)) was used at the preliminary evaluation of four factors, involving the following variables: sampling flow rate, elution flow rate, buffer concentration and pH. Regarding the studied levels, this design has shown that buffer concentration and pH were significant factors. The experimental conditions established in the optimization step were: pH=4.75, buffer concentration of 0.005 mol L(-1) for elution with HCl 1.0 mol L(-1) this system allows the determination of copper content with a detection limit (LD) of 0.018 µg L(-1) and a quantification limit (LQ) of 0.061 µg L(-1) precision expressed as relative standard deviation (R.S.D.) of 4.65 and 5.07%, utilizing concentration of 10 and 2.0 µg L(-1), respectively, and a preconcentration factor of 75, for a sample volume of 50.0 mL. Accuracy was confirmed by copper determination in the standard reference material, NIST SRM 1570 a trace element units in Spinach Leaves and by spike tests with recovery levels ranging from 93 to 100%; the procedure was applied for copper determination in tobacco leaf samples collected in Cruz das Almas City, Bahia, Brazil. The achieved concentrations of the three samples analyzed varied from 0.15 to 0.52 µg g(-1).