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1.
Sci Rep ; 5: 11502, 2015 Jun 26.
Artigo em Inglês | MEDLINE | ID: mdl-26112753

RESUMO

Spiders store spidroins in their silk glands as high concentration aqueous solutions, spinning these dopes into fibres with outstanding mechanical properties. Aciniform (or wrapping) silk is the toughest spider silk and is devoid of the short amino acid sequence motifs characteristic of the other spidroins. Using solution-state NMR spectroscopy, we demonstrate that the 200 amino acid Argiope trifasciata AcSp1 repeat unit contrasts with previously characterized spidroins, adopting a globular 5-helix bundle flanked by intrinsically disordered N- and C-terminal tails. Split-intein-mediated segmental NMR-active isotope-enrichment allowed unambiguous demonstration of modular and malleable "beads-on-a-string" concatemeric behaviour. Concatemers form fibres upon manual drawing with silk-like morphology and mechanical properties, alongside secondary structuring and orientation consistent with native AcSp1 fibres. AcSp1 structural stability varies locally, with the fifth helix denaturing most readily. The structural transition of aciniform spidroin from a mostly α-helical dope to a mixed α-helix/ß-sheet-containing fibre can be directly related to spidroin architecture and stability.


Assuntos
Precursores de Proteínas/química , Seda/química , Aranhas/metabolismo , Motivos de Aminoácidos , Animais , Difusão Dinâmica da Luz , Fibroínas/química , Hidrodinâmica , Proteínas de Insetos/química , Proteínas de Insetos/genética , Proteínas de Insetos/metabolismo , Ressonância Magnética Nuclear Biomolecular , Precursores de Proteínas/metabolismo , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Proteínas Recombinantes de Fusão/biossíntese , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética
2.
Appl Spectrosc ; 69(6): 689-98, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-25954973

RESUMO

To better understand the effect of mechanical stress during the spinning of silk, the protein orientation and conformation of Bombyx mori regenerated silk fibroin (RSF) films have been studied as a function of deformation in a static mode or in real time by tensile-Raman experiments and polarization modulation infrared linear dichroism (PM-IRLD), respectively. The data show that either for step-by-step or continuous stretching, elongation induces the progressive formation of ß-sheets that align along the drawing axis, in particular above a draw ratio of ~2. The formation of ß-sheets begins before their alignment during a continuous drawing. Unordered chains were, however, never found to be oriented, which explains the very low level of orientation of the amorphous phase of the natural fiber. Stress-perturbed unordered chains readily convert into ß-sheets, the strain-induced transformation following a two-state process. The final level of orientation and ß-sheet content are lower than those found in the native fiber, indicating that various parameters have to be optimized in order to implement a spinning process as efficient as the natural one. Finally, during the stress relaxation period in a step-by-step drawing, there is essentially no change of the content and orientation of the ß-sheets, suggesting that only unordered structures tend to reorganize.


Assuntos
Bombyx/química , Fibroínas/análise , Fibroínas/química , Animais , Conformação Proteica , Espectrofotometria Infravermelho , Análise Espectral Raman
3.
Langmuir ; 29(25): 7931-8, 2013 Jun 25.
Artigo em Inglês | MEDLINE | ID: mdl-23721197

RESUMO

The kinetics of adsorption of solubilized spider major ampullate (MA) silk fibers at the air-water interface and the molecular structure and mechanical properties of the interfacial films formed have been studied using various physical techniques. The data show that Nephila clavipes MA proteins progressively adsorb at the interface and ultimately form a highly cohesive thin film. In situ infrared spectroscopy shows that as soon as they reach the interface the proteins predominantly form ß sheets. The protein secondary structure does not change significantly as the film grows, and the amount of ß sheet is the same as that of the natural fiber. This suggests that the final ß-sheet content is mainly dictated by the primary structure and not by the underlying formation process. The measure of the shear elastic constant at low strain reveals a very strong, viscous, cohesive assembly. The ß sheets seem to form cross-links dispersed within an intermolecular network, thus probably playing a major role in the film strength. More importantly, the molecular weight seems to be a crucial factor because interfacial films made from the natural proteins are ~7 times stronger and ~3 times more viscous than those obtained previously with shorter recombinant proteins. Brewster angle microscopy at the air-water interface and transmission electron microscopy of transferred films have revealed a homogeneous organization on the micrometer scale. The images suggest that the structural assembly at the air-water interface leads to the formation of macroscopically solid and highly cohesive networks. Overall, the results suggest that natural spider silk proteins, although sharing similarities with recombinant proteins, have the particular ability to self-assemble into ordered materials with exceptional mechanical properties.


Assuntos
Seda/química , Água/química , Ar , Animais , Cinética , Microscopia Eletrônica de Transmissão , Espectrofotometria Infravermelho , Aranhas
4.
Biopolymers ; 97(6): 322-36, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21882171

RESUMO

Raman spectroscopy has long been proved to be a useful tool to study the conformation of protein-based materials such as silk. Thanks to recent developments, linearly polarized Raman spectromicroscopy has appeared very efficient to characterize the molecular structure of native single silk fibers and spinning dopes because it can provide information relative to the protein secondary structure, molecular orientation, and amino acid composition. This review will describe recent advances in the study of the structure of silk by Raman spectromicroscopy. A particular emphasis is put on the spider dragline and silkworm cocoon threads, other fibers spun by orb-weaving spiders, the spinning dope contained in their silk glands and the effect of mechanical deformation. Taken together, the results of the literature show that Raman spectromicroscopy is particularly efficient to investigate all aspects of silk structure and production. The data provided can lead to a better understanding of the structure of the silk dope, transformations occurring during the spinning process, and structure and mechanical properties of native fibers.


Assuntos
Aminoácidos/análise , Bombyx/fisiologia , Seda/química , Aranhas/fisiologia , Animais , Elasticidade , Microscopia , Estrutura Secundária de Proteína , Seda/metabolismo , Análise Espectral Raman
5.
J Colloid Interface Sci ; 356(2): 614-23, 2011 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-21316692

RESUMO

Adsorption of purified apo-ovotransferrin at the air-water interface was studied by ellipsometry, surface tension, polarization-modulation infrared reflection-absorption spectroscopy (PM-IRRAS), and shear elastic constant measurements. No significant difference was observed between pH 6.5 and 8.0 as regards the final value of surface concentration and surface pressure. However at low concentration, a weak barrier to adsorption is evidenced at pH 6.5 and confirmed by PM-IRRAS measurements. At a pH where the protein net charge is negative (pH 8.0), the behavior of ovotransferrin at the air-water interface is more influenced by charge effects rather than bulk concentration effects. At this pH, the interface exhibits a low shear elastic constant and a spectral signature not usual for globular proteins.


Assuntos
Conalbumina/química , Adsorção , Ar , Animais , Galinhas , Elasticidade , Concentração de Íons de Hidrogênio , Conformação Proteica , Espectrofotometria Infravermelho , Propriedades de Superfície , Água/química
6.
J Mol Biol ; 405(1): 238-53, 2011 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-21050860

RESUMO

Spiders that spin orb webs secrete seven types of silk. Although the spinning process of the dragline thread is beginning to be understood, the molecular events that occur in spiders' opisthosomal glands, which produce the other fibers, are unknown due to a lack of data regarding their initial and final structures. Taking advantage of the efficiency of Raman spectromicroscopy in investigating micrometer-sized biological samples, we have determined the secondary structure of proteins in the complete set of glands of the orb-weaving spider Nephila clavipes. The major and minor ampullate silks in the sac of their glands have identical secondary structures typical of natively unfolded proteins. Spidroins are converted into fibers containing highly oriented ß-sheets. The capture spiral represents a distinct structural singleton. The proteins are highly disordered prior to spinning and undergo no molecular change or alignment upon spinning. The cylindrical, aciniform, and piriform proteins are folded in their initial state with a predominance of α-helices, but whereas the cylindrical gland forms a fiber similar to the major ampullate thread, the aciniform and piriform glands produce fibers dominated by moderately oriented ß-sheets and α-helices. The conformation of the proteins before spinning is related to intrinsic characteristics of their primary structure. Proteins that are unfolded in the gland have repeat sequences composed of submotifs and display no sequence regions with aggregation propensity. By contrast, the folded proteins have neither submotifs nor aggregation-prone sequence regions. Taken together, the Raman data show a remarkable diversity of molecular transformations occurring upon spinning.


Assuntos
Aracnídeos , Fibroínas/química , Sequência de Aminoácidos , Animais , Dados de Sequência Molecular , Dobramento de Proteína , Estrutura Secundária de Proteína , Análise Espectral Raman
7.
J Phys Chem B ; 114(24): 8255-61, 2010 Jun 24.
Artigo em Inglês | MEDLINE | ID: mdl-20507143

RESUMO

Due to its unmatched hardness and chemical inertia, diamond offers many advantages over other materials for extreme conditions and routine analysis by attenuated total reflection (ATR) infrared spectroscopy. Its low refractive index can offer up to a 6-fold absorbance increase compared to germanium. Unfortunately, it also results for strong bands in spectral distortions compared to transmission experiments. The aim of this paper is to present a methodological approach to determine quantitatively the degree of the spectral distortions in ATR spectra. This approach requires the determination of the optical constants (refractive index and extinction coefficient) of the investigated sample. As a typical example, the optical constants of the fibroin protein of the silk worm Bombyx mori have been determined from the polarized ATR spectra obtained using both diamond and germanium internal reflection elements. The positions found for the amide I band by germanium and diamond ATR are respectively 6 and 17 cm(-1) lower than the true value dtermined from the k(nu) spectrum, which is calculated to be 1659 cm(-1). To determine quantitatively the effect of relevant parameters such as the film thickness and the protein concentration, various spectral simulations have also been performed. The use of a thinner film probed by light polarized in the plane of incidence and diluting the protein sample can help in obtaining ATR spectra that are closer to their transmittance counterparts. To extend this study to any system, the ATR distortion amplitude has been evaluated using spectral simulations performed for bands of various intensities and widths. From these simulations, a simple empirical relationship has been found to estimate the band shift from the experimental band height and width that could be of practical use for ATR users. This paper shows that the determination of optical constants provides an efficient way to recover the true spectrum shape and band frequencies of distorted ATR spectra.


Assuntos
Diamante/química , Espectrofotometria Infravermelho , Fibroínas/química , Germânio/química
8.
Langmuir ; 26(5): 3468-78, 2010 Mar 02.
Artigo em Inglês | MEDLINE | ID: mdl-20112931

RESUMO

Bovine lactoferricin (LfcinB) is an antimicrobial peptide obtained from the pepsin cleavage of lactoferrin. The activity of LfcinB has been extensively studied on diverse pathogens, but its mechanism of action still has to be elucidated. Because of its nonspecificity, its mode of action is assumed to be related to interactions with membranes. In this study, the interaction of LfcinB with a negatively charged monolayer of dipalmitoylphosphatidylglycerol has been investigated as a function of the surface pressure of the lipid film using in situ Brewster angle and polarization modulation infrared reflection absorption spectroscopy and on transferred monolayers by atomic force microscopy and polarized attenuated total reflection infrared spectroscopy. The data show clearly that LfcinB forms stable films at the air-water interface. They also reveal that the interaction of LfcinB with the lipid monolayer is modulated by the surface pressure. At low surface pressure, LfcinB inserts within the lipid film with its long molecular axis oriented mainly parallel to the acyl chains, while at high surface pressure, LfcinB is adsorbed under the lipid film, the hairpin being preferentially aligned parallel to the plane of the interface. The threshold for which the behavior changes is 20 mN/m. At this critical surface pressure, LfcinB interacts with the monolayer to form discoidal lipid-peptide assemblies. This structure may actually represent the mechanism of action of this peptide. The results obtained on monolayers are correlated by fluorescent probe release measurements of dye-containing vesicles made of lipids in different phases and support the important role of the lipid fluidity and packing on the activity of LfcinB.


Assuntos
Lactoferrina/química , Lactoferrina/metabolismo , Bicamadas Lipídicas/química , Bicamadas Lipídicas/metabolismo , Fosfolipídeos/metabolismo , Adsorção , Ar , Animais , Bovinos , Membrana Celular/química , Membrana Celular/metabolismo , Microscopia de Força Atômica , Fosfatidilgliceróis/metabolismo , Fosfolipídeos/química , Ligação Proteica , Espectrofotometria Infravermelho , Propriedades de Superfície , Água/química
9.
Biomacromolecules ; 10(10): 2945-53, 2009 Oct 12.
Artigo em Inglês | MEDLINE | ID: mdl-19785404

RESUMO

Silk fibers harvested from the web, cocoon, and prey wrapping of the spider Nephila clavipes have been studied by polarized Raman spectromicroscopy. The technique is efficient to differentiate the various types of silk by probing monofilaments produced by the major ampullate (MA), minor ampullate (MI), cylindriform, flagelliform, and aciniform glands. The spectra show that the MA, MI, and cylindriform silks belong to the same structural class and are composed of highly oriented beta-sheets (35-37%) with other slightly oriented secondary structures. Spectral markers of particular motifs involved in the beta-sheets have been identified. The flagelliform silk represents a second, very peculiar structural class. It displays a heterogeneous disordered conformation without any preferential orientation. Such characteristics certainly play a role in the large extensibility of this silk. The aciniform silk represents a third class of silk dominated by moderately oriented beta-sheets (approximately 30%) and alpha-helices (approximately 24%). Such a structure seems important in explaining the high toughness of this silk.


Assuntos
Proteínas de Insetos/química , Seda/química , Aranhas , Animais , Análise Espectral Raman
10.
J Phys Chem B ; 113(22): 7753-61, 2009 Jun 04.
Artigo em Inglês | MEDLINE | ID: mdl-19435327

RESUMO

Psychrophiles are cold-adapted organisms that produce enzymes that display a high catalytic efficiency at low temperatures. In recent years, these low-temperature working enzymes have attracted the attention of scientists because of their peculiar properties that render them particularly useful in investigating the relationship between enzyme stability and flexibility. Recently, a new esterase was identified and isolated from the cold-adapted organism Pseudoalteromonas haloplanktis. The enzyme, denoted as PhEST, presents a dimeric structure with a molecular mass of 60 kDa. In this work, we used Fourier transform infrared spectroscopy and molecular dynamics simulations to investigate the functional and structural properties of PhEST over a wide range of temperature. The obtained results reveal that the structure of PhEST is quite stable up to 40 degrees C. In fact, the protein starts to denature at about 45 degrees C through the formation of new secondary structural elements such as intermolecular beta-sheets. In addition, our results indicate that the flexibility of protein segment 55-65 (335-345 in subunit B), which corresponds to a loop near the active site of the enzyme, plays a crucial role in the protein function.


Assuntos
Esterases/química , Pseudoalteromonas/enzimologia , Espectroscopia de Infravermelho com Transformada de Fourier , Aclimatação , Simulação por Computador , Estabilidade Enzimática , Escherichia coli/genética , Esterases/genética , Modelos Moleculares , Conformação Proteica , Desnaturação Proteica , Temperatura
11.
Langmuir ; 25(14): 8170-80, 2009 Jul 21.
Artigo em Inglês | MEDLINE | ID: mdl-19400566

RESUMO

The dragline fiber of spiders is composed of two proteins, the major ampullate spidroins I and II (MaSpI and MaSpII). To better understand the assembly mechanism and the properties of these proteins, the adsorption behavior of the recombinant proteins of the spider Nephila clavipes produced by Nexia Biotechnologies Inc. has been studied at the air-water interface using ellipsometry, surface pressure, rheological, and infrared measurements. The results show that the adsorption is more rapid and more molecules are present at the interface for MaSpII than for MaSpI. MaSpII has thus a higher affinity for the interface than MaSpI, which is consistent with its higher aggregation propensity in water. The films formed at the interface consist of networks containing a high content of intermolecular beta-sheets as revealed by the in situ polarization modulation infrared absorption reflection spectra. The infrared results further demonstrate that, for MaSpI, the beta-sheets are formed as soon as the proteins adsorb to the interface while for MaSpII the beta-sheet formation occurs more slowly. The amount of beta-sheets is lower for MaSpII than for MaSpI, most likely due to the presence of proline residues in its sequence. Both proteins form elastic films, but they are heterogeneous for MaSpI and homogeneous for MaSpII most probably as a result of a more ordered and slower aggregation process for MaSpII. This difference in their mechanism of assembly and interfacial behaviors does not seem to arise from their overall hydrophobicity or from a specific pattern of hydrophobicity, but rather from the longer polyalanine motifs, lower glycine content, and higher proline content of MaSpII. The propensity of both spidroins to form beta-sheets, especially the polyalanine blocks, suggests the participation of both proteins in the silk's beta-sheet crystallites.


Assuntos
Ar , Proteínas Recombinantes/química , Seda/química , Aranhas/metabolismo , Água/química , Absorção , Animais , Interações Hidrofóbicas e Hidrofílicas , Conformação Proteica , Espectrofotometria Infravermelho , Propriedades de Superfície
12.
Langmuir ; 25(14): 8181-6, 2009 Jul 21.
Artigo em Inglês | MEDLINE | ID: mdl-19397273

RESUMO

The conformation of puroindoline-a (PIN-a), a protein extracted from wheat endosperm, in free-standing black films has been studied using confocal Raman spectroscopy. This protein is characterized by the presence in its sequence of a unique tryptophan (Trp)-rich domain and of five disulfide bridges stabilizing its three-dimensional structure. PIN-a is able to form free-standing films, which are very stable in time, because of its remarkable surface-active properties. These films become black in a few hours and are characterized by the presence of numerous aggregates. Their Raman spectra show major modifications of the PIN-a structure as compared to the solid form, such as the formation of beta-sheets or unordered structures, the modification of the environment of the Trp domain and, the conformation of disulfide bridges. These modifications are in agreement with an unfolding of the protein at the interfaces of the film and suggest that the Trp domain is involved in the aggregation. We have also studied the influence of increasing amounts of lysopalmitoylphosphatidylcholine (LPC) into the films. The direct observation of these mixed films shows that LPC inhibits the formation of PIN-a aggregates and that the conformation of PIN-a is strongly correlated to the LPC/PIN-a molar ratio. Raman spectroscopy also shows that PIN-a disturbs the highly organized arrangement of LPC molecules in the film.


Assuntos
Lisofosfatidilcolinas/química , Proteínas de Plantas/química , Análise Espectral Raman/métodos , Ligação Proteica
13.
Appl Spectrosc ; 62(9): 956-62, 2008 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18801233

RESUMO

Polarized attenuated total reflection (ATR) infrared spectroscopy is an efficient technique to determine the orientation and conformation of a large variety of samples, but it is more difficult to apply to very small specimens such as silk fibers. The Golden Gate single-reflection ATR accessory that uses diamond as an ATR element and a focalized beam turns out to be highly efficient to study quantitatively the orientation and conformation of a single silk fibroin filament of the silkworm Bombyx mori that is about 10 mum in diameter. For orientation measurements, rotating the sample instead of the electric field greatly simplifies the theoretical analysis and keeps the penetration depth of the infrared radiation constant. A sample holder that can be fitted on the ATR accessory has thus been developed to allow accurate rotation of the sample and to obtain spectra with a low, non-damaging, and reproducible pressure on the fiber. To validate the method, spectra have been recorded as a function of the angle theta between the fiber axis and the polarization of the incident radiation. The data have been fitted following the cosine square dependency of the absorbance with respect to the angle theta. The procedure has been applied to the spectral components of the amide I bands, as determined from spectral decomposition. Multiple angle measurements turn out to be quite useful to correct systematic angle errors and validate the accuracy of the curve-fitting parameters of the band decomposition. By using the calculated dichroic ratio, a parameter of -0.46+/-0.01 has been calculated for the antiparallel beta-sheets and -0.04+/-0.02 for the remaining structures. From the orientation-insensitive spectrum A0, the amount of beta-sheets has been estimated to 49+/-3%. The results obtained from only two measurements with the electric field of the incident radiation parallel and perpendicular to the fiber axis has demonstrated that ATR spectroscopy can be used routinely in quantitative studies of the molecular orientation and conformation of macromolecules.


Assuntos
Algoritmos , Cristalografia/métodos , Fibroínas/ultraestrutura , Seda/ultraestrutura , Manejo de Espécimes/instrumentação , Manejo de Espécimes/métodos , Espectrofotometria Infravermelho/instrumentação , Espectrofotometria Infravermelho/métodos , Fibroínas/química , Conformação Proteica , Seda/química
14.
Biomacromolecules ; 9(9): 2399-407, 2008 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18702545

RESUMO

The orientational and conformational transformation of the native liquid silk into a solid fiber in the major ampullate gland of the spider Nephila clavipes has been studied by Raman spectromicroscopy. The spectra show that the conformation of silk proteins in the glandular sac contains several secondary structure elements, which is consistent with intrinsically unfolded proteins. A few alpha-helices are also present and involve some alanine residues located in the polyalanine segments of the spidroin sequence. The conversion of the silk solution in the major ampullate gland appears to be a two-state process without intermediate states. In the first and second limbs of the duct, silk is isotropic and spidroins are generally native-like. beta-Sheets start to develop between the second and the third limb of the duct, suggesting that early beta-sheets are generated by shear forces. However, most of the beta-sheets are formed between the draw down taper and the valve. The early beta-sheets formed upward of the draw down taper might play the role of nucleation sites for the subsequent beta-sheet aggregation. The alignment of the polypeptides chains occurs near the valve, revealing that orientational and conformational changes do not occur simultaneously. Extensional flow seems to be the driving force to produce the orientational order, which in turn is associated with the formation of the major part of the beta-sheets. The slow evolution of the spidroin conformation up to the draw down taper followed by the rapid transformation between the drawn down taper and the valve may be important to achieve the optimal structure of the final fiber.


Assuntos
Proteínas de Insetos/química , Proteínas de Insetos/metabolismo , Seda/química , Seda/metabolismo , Aranhas/anatomia & histologia , Aranhas/metabolismo , Animais , Conformação Proteica , Padrões de Referência , Especificidade da Espécie , Análise Espectral Raman
15.
Proteins ; 72(2): 769-78, 2008 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-18260099

RESUMO

Bovine odorant-binding protein (bOBP), a member of the lipocalin family, presents the so-called 3D "domain-swapped" protein structure. In fact, in solution, it appears as a dimer in which each monomer is composed by the classical lipocalin fold, with a central beta-barrel followed by a stretch of residues and the alpha-helix domain protruding out of the barrel and crossing the dimer interface. Recently, a deswapped mutant form of bOBP was obtained, in which a Gly residue was inserted after position 121 and the two residues in position 64 and 156 were replaced by Cys residues for restoring the disulfide bridge common to the lipocalin family. In this work, we used Fourier transform infrared spectroscopy and molecular dynamics simulations to investigate the effect of temperature on the structural stability and conformational dynamics of the mutant bOBP. The spectroscopic and molecular simulation data pointed out that the hydrophobic regions of the protein matrix appear to be an important factor for the protein stability and integrity. In addition, it was also found that the mutant bOBP is significantly stabilized by the binding of the ligand, which may have an impact on the biological function of bOBP. The obtained results will allow for a better use of this protein as probe for the design of advanced protein-based biosensors for the detection of compounds used in the fabrication of explosive powders.


Assuntos
Mutação , Receptores Odorantes/química , Espectrofotometria Infravermelho/métodos , Animais , Bovinos , Receptores Odorantes/genética , Receptores Odorantes/metabolismo
16.
Biomacromolecules ; 8(8): 2342-4, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17658884

RESUMO

To understand the spinning process of dragline silk by spiders, the protein conformation before spinning has to be determined. Raman confocal spectromicroscopy has been used to study the conformation of the proteins in situ in the intact abdominal major ampullate gland of Nephila clavipes and Araneus diadematus spiders. The spectra obtained are typical of natively unfolded proteins and are very similar to that of a mixture of recombinant silk proteins. Vibrational circular dichroism reveals that the conformation is composed of random and polyproline II (PPII) segments with some alpha-helices. The alpha-helices seem to be located in the C-terminal part whereas the repetitive sequence is unfolded. The PPII structure can significantly contribute to the efficiency of the spinning process in nature.


Assuntos
Proteínas de Insetos/química , Seda/química , Aranhas/metabolismo , Animais , Dicroísmo Circular , Microscopia , Peptídeos/análise , Estrutura Secundária de Proteína , Análise Espectral Raman
17.
J Am Chem Soc ; 129(13): 3897-905, 2007 Apr 04.
Artigo em Inglês | MEDLINE | ID: mdl-17352470

RESUMO

Nephila clavipes dragline silk microstructure has been investigated by scanning transmission X-ray microscopy (STXM), a technique that allows quantitative mapping of the level of orientation of the peptide groups at high spatial resolution (<50 nm). Maps of the orientation parameter P2 have been derived for spider silk for the first time. Dragline silk presents a very fine microstructure in which small, highly oriented domains (average area of 1800 nm2, thus clearly bigger than individual beta-sheet crystallites) are dispersed in a dominant, moderately oriented matrix with several small unoriented domains. Our results also highlight the orientation of the noncrystalline fraction in silk, which has been underestimated in numerous structural models. No evidence of either a regular lamellar structure or any periodicity along the fiber was observed at this spatial resolution. The surface of fresh spider silk sections consists of a approximately 30-120 nm thick layer of highly oriented protein chains, which was found to vary with the reeling speed, where web building (0.5 cm/s) and lifeline (10 cm/s) spinning speeds were investigated. While the average level of orientation of the protein chains is unaffected by the spinning speed, STXM measurements clearly highlight microstructure differences. The slowpull fiber contains a larger fraction of highly oriented domains, while the protein chains are more homogeneously oriented in the fastpull fiber. In comparison, cocoon silk from the silkworm Bombyx mori presents a narrower orientation distribution. The strength-extensibility combination found in spider dragline silk is associated with its broad orientation distribution of highly interdigitated and unoriented domains.


Assuntos
Seda/ultraestrutura , Aranhas/ultraestrutura , Animais , Bombyx/crescimento & desenvolvimento , Microanálise por Sonda Eletrônica , Microscopia Eletrônica de Varredura , Microscopia Eletrônica de Transmissão , Fatores de Tempo
18.
Biophys J ; 92(8): 2885-95, 2007 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-17277183

RESUMO

Taking advantage of recent advances in polarized Raman microspectroscopy, and based on a rational decomposition of the amide I band, the conformation and orientation of proteins have been determined for cocoon silks of the silkworms Bombyx mori and Samia cynthia ricini and dragline silks of the spiders Nephila clavipes and Nephila edulis. This study distinguished between band components due to beta-sheets, beta-turns, 3(1)-helices, and unordered structure for the four fibers. For B. mori, the beta-sheet content is 50%, which matches the proportion of residues that form the GAGAGS fibroin motifs. For the Nephila dragline and S. c. ricini cocoon, the beta-sheet content (36-37% and 45%, respectively) is higher than the proportion of residues that belong to polyalanine blocks (18% and 42%, respectively), showing that adjacent GGA motifs are incorporated into the beta-sheets. Nephila spidroins contain fewer beta-sheets and more flexible secondary structures than silkworm fibroins. The amorphous polypeptide chains are preferentially aligned parallel to the fiber direction, although their level of orientation is much lower than that of beta-sheets. Overall, the results show that the four silks exhibit a common molecular organization, with mixtures of different amounts of beta-sheets and flexible structures, which are organized with specific orientation levels.


Assuntos
Bombyx/química , Microscopia/métodos , Seda/química , Seda/ultraestrutura , Análise Espectral Raman/métodos , Aranhas/química , Sequência de Aminoácidos , Animais , Dados de Sequência Molecular , Estrutura Secundária de Proteína , Especificidade da Espécie
19.
Biomacromolecules ; 7(9): 2512-21, 2006 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-16961312

RESUMO

Raman microspectroscopy has been used to quantitatively study the effect of a mechanical deformation on the conformation and orientation of Samia cynthia ricini (S. c. ricini) silk fibroin. Samples were obtained from the aqueous solution stored in the silk gland and stretched at draw ratios (lambda) ranging from 0 to 11. Using an appropriate band decomposition procedure, polarized and orientation-insensitive spectra have been analyzed to determine order parameters and the content of secondary structures, respectively. The data unambiguously show that, in response to mechanical deformation, S. c. ricini fibroin undergoes a cooperative alpha-helix to beta-sheet conformational transition above a critical draw ratio of 4. The alpha-helix content decreases from 33 to 13% when lambda increases from 0 to 11, while the amount of beta-sheets increases from 15 to 37%. In comparison, cocoon silk is devoid of alpha-helical structure and always contains a larger amount of beta-sheets. Although the presence of isosbestic points in different spectral regions reveals that the conformational change induced by mechanical deformation is a two-state process, our results suggest that part of the glycine residues might be incorporated into beta-poly(alanine) structures. The beta-sheets are initially isotropically distributed and orient along the fiber axis as lambda increases, but do not reach the high level of orientation found in the cocoon fiber. The increase in the orientation level of the beta-sheets is found to be concomitant with the alpha --> beta conformational conversion, whereas alpha-helices do not orient under the applied strain but are rather readily converted into beta-sheets. The components assigned to turns exhibit a small orientation perpendicular to the fiber axis in stretched samples, showing that, overall, the polypeptide chains are aligned along the stretching direction. Our results suggest that, in nature, factors other than stretching contribute to the optimization of the amount of beta-sheets and the high degree of orientation found in natural cocoon silk.


Assuntos
Materiais Biocompatíveis/química , Fibroínas/química , Análise Espectral Raman/métodos , Algoritmos , Animais , Bombyx , Substâncias Macromoleculares , Teste de Materiais , Conformação Molecular , Peptídeos , Engenharia de Proteínas , Estrutura Secundária de Proteína , Seda/metabolismo , Estresse Mecânico
20.
Appl Spectrosc ; 60(8): 841-6, 2006 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-16925918

RESUMO

Separating effects due to molecular conformation from those due to orientation in the spectra of oriented samples obtained by Raman microspectroscopy is a complex issue. To solve this problem, we propose a procedure to calculate an orientation-insensitive spectrum (so-called isotropic spectrum) from polarized spectra obtained by Raman microspectroscopy that is valid for systems that exhibit a uniaxial symmetry. The method has first been tested on highly oriented samples of high-density polyethylene (HDPE). Polarized and isotropic spectra of a highly oriented HDPE cylindrical rod and an isotropic HDPE sample have been compared. The differences in the relative intensities, which occur in the polarized spectra and are due to orientation of the polyethylene chains, are nearly cancelled in the isotropic spectra, showing that the orientation-insensitive spectrum adequately represents the molecular conformation without contributions of orientation. Second, spectra of silk fibroins have been compared in the amide I region for Bombyx mori cocoon silk fibers and methanol-treated regenerated fibroin films. The similarity of the shape of the amide I band of the isotropic spectra indicates that the secondary structure of the fibroins is very close in both samples. These experimental results support the conclusion that the molecular conformation can be efficiently characterized from the intensity and the shape of Raman bands in the orientation-insensitive spectrum.


Assuntos
Polietileno/química , Seda/química , Análise Espectral Raman/métodos , Animais , Bombyx , Modelos Teóricos , Estrutura Secundária de Proteína
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