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1.
Chem Phys Lipids ; 203: 87-93, 2017 03.
Artigo em Inglês | MEDLINE | ID: mdl-28048967

RESUMO

The osmotic condition modulates the properties of liposomes, particularly those related to their stability and response to external agents such as membrane-active proteins or peptides. In a previous work, we have demonstrated that an osmotic shock can increase, per se, water influx/efflux and the exit of the fluorophore calcein entrapped in the aqueous pool of dipalmitoylphosphatidylcholine (DPPC) and DPPC:sphingomyelin (SM) large unilamellar vesicles (LUVs), suggesting a loss of integrity of the liposome bilayer. In the present work, we have extended our study in order to assess how an osmotic imbalance prior to or synchronous with the addition of a recombinant variant of the pore-forming toxin sticholysin I (rSt I) modifies its pore forming capacity in DPPC and DPPC:SM (1:1) LUVs. Our results conclusively show the capacity of hypotonic gradients to improve the pore forming capacity of rSt I molecules, even in pure DPPC liposomes, rendering pore-formation less dependent on the presence of sphyngomyelin. In fact, non-active toxins in DPPC liposomes become active by a hypotonic imbalance in a similar way to those containing SM as a second component.


Assuntos
1,2-Dipalmitoilfosfatidilcolina/química , Pressão Osmótica , Proteínas Citotóxicas Formadoras de Poros/química , Compostos Orgânicos/química
2.
Protein J ; 33(5): 493-501, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-25218252

RESUMO

Sea anemones synthesize a variety of toxic peptides and proteins of biological interest. The Caribbean Sea anemone Stichodactyla helianthus, produces two pore-forming toxins, Sticholysin I (St I) and Stichloysin II (St II), with the ability to form oligomeric pores in cell and lipid bilayers characteristically lacking cysteine in their amino acid sequences. Recently, two mutants of a recombinant variant of Sticholysin I (rSt I) have been obtained with a Cys residue in functionally relevant regions for the pore-forming activity of the toxin: r St I F15C (in the amino terminal sequence) and r St I R52C (in the binding site). Aiming at characterizing the effects of oxidants in toxins devoid (r St I) or containing -SH moieties (r St I F15C and r St I R52C), we measured their hemolytic activity and pore forming capacity prior and after their incubation with peroxynitrite (ONOO(-)). At low ONOO(-)/Toxin ratios, nearly 0.8 Trp groups are modified by each added peroxynitrite molecule, and the toxin activity is reduced in ca. 20 %. On the other hand, in -SH bearing mutants only 0.5 Trp groups are modified by each peroxynitrite molecule and the toxin activity is only reduced in 10 %. The results indicated that Cys is the initial target of the oxidative damage and that Trp residues in Cys-containing toxins were less damaged than those in r St I. This relative protection of Trp groups correlates with a smaller loss of hemolytic activity and permeabilization ability in liposomes and emphasizes the relevance of Trp groups in the pore forming capacity of the toxins.


Assuntos
Ácido Peroxinitroso/química , Adulto , Cisteína/química , Eritrócitos/efeitos dos fármacos , Hemólise/efeitos dos fármacos , Humanos , Lipossomos , Compostos Orgânicos/química , Compostos Orgânicos/farmacologia , Oxirredução/efeitos dos fármacos , Permeabilidade , Espectrometria de Fluorescência , Compostos de Sulfidrila , Adulto Jovem
3.
Toxicon ; 58(1): 8-17, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21510967

RESUMO

Experimental evidence shows that the mechanism of pore formation by actinoporins is a multistep process, involving binding of the water-soluble monomer to the membrane and subsequent oligomerization on the membrane surface, leading to the formation of a functional pore. However, as for other eukaryotic pore-forming toxins, the molecular details of the mechanism of membrane insertion and oligomerization are not clear. In order to obtain further insight with regard to the structure-function relationship in sticholysins, we designed and produced three cysteine mutants of recombinant sticholysin I (rStI) in relevant functional regions for membrane interaction: StI E2C and StI F15C (in the N-terminal region) and StI R52C (in the membrane binding site). The conformational characterization derived from fluorescence and CD spectroscopic studies of StI E2C, StI F15C and StI R52C suggests that replacement of these residues by Cys in rStI did not noticeably change the conformation of the protein. The substitution by Cys of Arg5² in the phosphocholine-binding site, provoked noticeable changes in rStI permeabilizing activity; however, the substitutions in the N-terminal region (Glu², Phe¹5) did not modify the toxin's permeabilizing ability. The presence of a dimerized population stabilized by a disulfide bond in the StI E2C mutant showed higher pore-forming activity than when the protein is in the monomeric state, suggesting that sticholysins pre-ensembled at the N-terminal region could facilitate pore formation.


Assuntos
Proteínas Citotóxicas Formadoras de Poros/química , Animais , Arginina/química , Arginina/genética , Sítios de Ligação , Membrana Celular/química , Membrana Celular/metabolismo , Clonagem Molecular , Cisteína/química , Cisteína/genética , Mutagênese Sítio-Dirigida , Mutação , Compostos Orgânicos/química , Compostos Orgânicos/toxicidade , Proteínas Citotóxicas Formadoras de Poros/genética , Proteínas Citotóxicas Formadoras de Poros/toxicidade , Estrutura Terciária de Proteína , Anêmonas-do-Mar/metabolismo , Relação Estrutura-Atividade
4.
Case Rep Med ; 2009: 745713, 2009.
Artigo em Inglês | MEDLINE | ID: mdl-19901997

RESUMO

We report the occurrence of a bilateral pneumothoraces after unilateral central venous catheterization of the right subclavian vein in a 70-year-old patient. The patient had no history of pulmonary or pleural disease and no history of cardiothoracic surgery. Two days earlier, she had a median laparotomy under general and epidural anaesthesia. Prior to the procedure, the patient was hemodynamically stable and her transcutaneous oxygen saturation was 97% in room air. We punctured the right pleural space before cannulation of the right subclavian vein. After the procedure, the patient slowly became hemodynamically instable with respiratory distress. A chest radiograph revealed a complete left-side pneumothorax and a mild right-side pneumothorax. The right-side pneumothorax became under tension after left chest tube insertion. The symptoms finally resolved after insertion of a right chest tube. After a diagnostic work-up, we suspect a congenital "Buffalo chests" explaining bilateral pneumothoraces and a secondary tension pneumothorax.

5.
J Biosci ; 34(6): 891-8, 2009 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-20093742

RESUMO

Sticholysins I and II (St I/II) are cytolysins purified from the sea anemone Stichodactyla helianthus. In this study, we show their pharmacological action on guinea-pig and snail models in native and pH-denatured conditions in order to correlate the pharmacological findings with the pore-forming activity of both isoforms. In guinea-pig erythrocytes (N=3), St II possessed higher haemolytic activity in comparison with St I and this activity was lost at an alkaline pH. In molluscan central neurons (N=30), they irreversibly decreased the amplitude of the cholinergic response; St I (EC (50) 0.6 micromolL (-1)) was more potent than St II (EC50 > 6.6 micromolL (-1)) and they both increased the duration of the action potential; these effects were absent at an alkaline pH. In guinea-pig isolated atrium (N=25), both increased the amplitude of the contraction force, but St II was more potent than St I (EC (50) 0.03 micromolL (-1) and 0.3 micromolL (-1), respectively) and this effect persisted at an alkaline pH. In summary, both cytolysins have neuroactive and cardioactive properties. The main mechanism in molluscan neurons seems to be associated with the cytolytic activity of these molecules, whereas inguinea-pig atrium, the existence of an additional pharmacological mechanism might be contributing to the observed effect.


Assuntos
Venenos de Cnidários/farmacologia , Citotoxinas/farmacologia , Proteínas Citotóxicas Formadoras de Poros/farmacologia , Anêmonas-do-Mar/química , Potenciais de Ação/efeitos dos fármacos , Animais , Venenos de Cnidários/isolamento & purificação , Citotoxinas/isolamento & purificação , Eritrócitos/efeitos dos fármacos , Cobaias , Átrios do Coração/efeitos dos fármacos , Hemólise/efeitos dos fármacos , Neurônios/citologia , Neurônios/efeitos dos fármacos , Neurônios/fisiologia , Compostos Orgânicos/isolamento & purificação , Compostos Orgânicos/farmacologia , Proteínas Citotóxicas Formadoras de Poros/isolamento & purificação , Caramujos
6.
Lett Appl Microbiol ; 46(5): 548-54, 2008 May.
Artigo em Inglês | MEDLINE | ID: mdl-18363654

RESUMO

AIMS: In this work, fatty acid content and profiles were analysed in order to differentiate the species Tenacibaculum maritimum, Tenacibaculum gallaicum, Tenacibaculum discolor and Tenacibaculum ovolyticum that are pathogenic for cultured marine fish and to assess the potential of fatty acid profiles as a tool for epizootiological typing. METHODS AND RESULTS: The fatty acid methylesters (FAMEs) were extracted from cells grown on marine agar for 48 h at 25 degrees C and were prepared and analysed according to the standard protocol of the MIDI/Hewlett Packard Microbial Identification System. The cellular fatty acid profiles of Tenacibaculum strains tested were characterized by the presence of large amounts of branched (36.1-40.2%) and hydroxylated (29.6-31.7%) fatty acids. The FAME products from the four species significantly (P < 0.05) differed in the content of iso-C(15:0)3-OH, iso-C(16:0)3-OH, iso-C(15:1)G, summed feature 3 (a component that contains C(16:1)omega7c and/or iso-C(15:0) 2-OH), iso-C(16:0), C(17:1)omega6c, C(15:0)3-OH, iso-C(17:0)3-OH. CONCLUSIONS: Results of present study demonstrated the existence of differences in the fatty acids content between the T. maritimum isolates from different marine fish/geographical origin and between strains of T. maritimum, T. discolor, T. gallaicum and T. ovolyticum. SIGNIFICANCE AND IMPACT OF THE STUDY: Profiling of fatty acids may be a useful tool to distinguish T. maritimum from other Tenacibaculum species pathogenic for fish as well as for epizootiological differentiation of T. maritimum isolates.


Assuntos
Ácidos Graxos/análise , Doenças dos Peixes/microbiologia , Infecções por Flavobacteriaceae/veterinária , Flavobacteriaceae/química , Flavobacteriaceae/classificação , Animais , Técnicas de Tipagem Bacteriana , Peixes , Infecções por Flavobacteriaceae/microbiologia
7.
Toxicon ; 48(8): 1083-94, 2006 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-17067649

RESUMO

Sticholysins I and II (Sts I and II) are two potent cytolysins from the sea anemone Stichodactyla helianthus. These isoforms present 13 substitutions, with three non-conservative located at the N-terminus. St II is considerably more hemolytic than St I in human red blood cells, a result explained by the smaller number of negatively charged groups present at St II's N-terminus. In the present work, we have obtained a recombinant St I (rSt I), differing from the wild type in a single amino acid residue (E16Q). This pseudo-wild type is structurally similar to St I and shows a similar capacity to interact with and form pores in model membranes. This was assessed by the intrinsic fluorescence increase in the presence of liposomes, their adsorption to bilayers (measured by SPR), their concentration at the air-water interface, their interaction with lipid monolayers and their capacity to promote the release of carboxyfluorescein entrapped in liposomes. In spite of these similarities, rSt I presents a larger hemolytic activity in human red blood cells than St I, being intermediate in activity between Sts I and II. The results obtained in the present work emphasize that even the change of one single E by Q at the N-terminal segment may modify the toxin HA and show that this functional property is the most sensitive to subtle changes in the protein primary structure.


Assuntos
Proteínas Citotóxicas Formadoras de Poros/química , Anêmonas-do-Mar/química , Sequência de Aminoácidos , Animais , Sequência de Bases , Dicroísmo Circular , Eritrócitos/efeitos dos fármacos , Bicamadas Lipídicas/metabolismo , Lipossomos/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Compostos Orgânicos/química , Compostos Orgânicos/isolamento & purificação , Compostos Orgânicos/metabolismo , Permeabilidade/efeitos dos fármacos , Proteínas Citotóxicas Formadoras de Poros/genética , Proteínas Citotóxicas Formadoras de Poros/metabolismo , Estrutura Terciária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Análise de Sequência de Proteína , Ressonância de Plasmônio de Superfície , Tensão Superficial/efeitos dos fármacos
8.
J Fish Dis ; 28(3): 165-72, 2005 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-15752277

RESUMO

The commercial furunculosis vaccine Aquavac Furovac 5 and an autogenous vaccine, based on the challenge strain, induced immune protection in turbot, Scophthalmus maximus (L.), as shown in challenge tests 120 days post-immunization by injection (relative percentage of survival, RPS = 72-99%). This protective effect lasted for at least 6 months post-immunization at appreciable levels (RPS = 50-52%). Neither the autogenous vaccine nor the commercial vaccine was able to induce significant levels of protection against Aeromonas salmonicida in turbot when administered by immersion. Antibody levels were high or moderate in fish vaccinated by injection with the different vaccines and very low in fish vaccinated by immersion. The field results show that delivering an oral boost after the primary vaccination by injection did not enhance protection of turbot against furunculosis and that water-based (autogenous vaccine) and oil adjuvanted (Alpha Ject 1200) vaccines administered by injection conferred similar levels of protection (RPS > 80%) in turbot.


Assuntos
Aeromonas salmonicida/imunologia , Doenças dos Peixes/microbiologia , Doenças dos Peixes/prevenção & controle , Linguados , Furunculose/veterinária , Infecções por Bactérias Gram-Negativas/veterinária , Vacinação/veterinária , Administração Oral , Animais , Anticorpos Antibacterianos/sangue , Aquicultura/métodos , Vacinas Bacterianas/administração & dosagem , Ensaio de Imunoadsorção Enzimática , Furunculose/prevenção & controle , Infecções por Bactérias Gram-Negativas/prevenção & controle , Imersão , Injeções , Fatores de Tempo
9.
J Endocrinol Invest ; 27(7): 670-5, 2004.
Artigo em Inglês | MEDLINE | ID: mdl-15505992

RESUMO

IGF-I has been demonstrated to stimulate basal and GnRH-induced gonadotropin release. IGF-I also elicites alpha-subunit secretion in human pituitary tumor cells. The aims of this study were to evaluate both the effect of IGF-I on gonadotropin LH-beta and FSH-beta mRNA levels and glycoprotein alpha-subunit gene expression in cultured rat anterior pituitary cells. The exposure of pituitary cells to recombinant human IGF-I (rhlGF-I; 2 microg/ml) for 72 h markedly stimulated basal LH and FSH release whereas their mRNA levels remained unmodified. IGF-I elicited a-subunit release from pituitary cells (p < 0.01) and augmented its mRNA levels. Exposure to IGF-I consistently reduced GH release from pituitary cells. This study shows that the gonadotropin-releasing effects of IGF-I are not paralleled by changes in their mRNAs whereas IGF-I stimulates not only alpha-subunit release but also its mRNA levels. This study provides the first observation of alpha-subunit regulation by IGF-I in normal pituitary cells, where a differential regulation between release and synthesis for gonadotropin a-and 1-subunits is also shown.


Assuntos
Subunidade beta do Hormônio Folículoestimulante/biossíntese , Subunidade alfa de Hormônios Glicoproteicos/biossíntese , Fator de Crescimento Insulin-Like I/farmacologia , Hormônio Luteinizante Subunidade beta/biossíntese , Hipófise/fisiologia , Animais , Técnicas de Cultura de Células , Regulação da Expressão Gênica/efeitos dos fármacos , Masculino , RNA Mensageiro/análise , Ratos , Ratos Wistar
10.
Int Immunopharmacol ; 4(6): 731-44, 2004 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-15135315

RESUMO

Sticholysin I (StI), a potent cytolysin isolated from the sea anemone Stichodactyla helianthus, was linked to the monoclonal antibody (mAb) ior C5. StI acts by forming hydrophilic pores in the membrane of the attacked cells leading to osmotic lysis. ior C5 is a murine IgG1, which recognizes the tumor associated antigen (TAA) ior C2. The cytolysin and the mAb were coupled by using the heterobifunctional cross-linking reagent sulfosuccinimidyl 4-(N-maleimidomethyl)-cyclohexane-1-carboxylate (SMCC). Two hybrid molecules composed by one ior C5 and one or two StI molecules were obtained (named conjugated I and II, respectively). The purified conjugates were evaluated by a binding affinity assay against an ior C2-positive colon cancer cell line (SW948). Both molecules were able to recognize the antigen (Ag) in the same way that unconjugated ior C5 does. The activity of both conjugates against human erythrocytes and SW948 cells was assessed. They lost most of their hemolytic activity but their residual activity was very similar. Nevertheless, when their cytotoxicity was studied on the SW948 cell line, only conjugate II killed efficiently the cells, indicating a specific mAb-Ag interaction. In this chimeric molecule the ratio between the cytotoxic and the hemolytic activity was larger than that of the free cytolysin. This fact indicates an increase of the specificity of the toxic effect toward the SW948 cell line and consequently an increase of the difference between its hemolytic and cytotoxic doses. The results herein support the feasibility of directing StI to the surface of cancer cells expressing ior C2 Ag via the mAb ior C5.


Assuntos
Adenocarcinoma/tratamento farmacológico , Anticorpos Monoclonais/química , Anticorpos Monoclonais/farmacologia , Neoplasias do Colo/tratamento farmacológico , Proteínas Hemolisinas/química , Proteínas Hemolisinas/farmacologia , Imunotoxinas/farmacologia , Porinas/química , Porinas/farmacologia , Adenocarcinoma/patologia , Animais , Anticorpos Monoclonais/isolamento & purificação , Western Blotting , Linhagem Celular Tumoral , Sobrevivência Celular/efeitos dos fármacos , Neoplasias do Colo/patologia , Eletroforese em Gel de Poliacrilamida , Ensaio de Imunoadsorção Enzimática , Citometria de Fluxo , Proteínas Hemolisinas/isolamento & purificação , Hemólise/efeitos dos fármacos , Humanos , Indicadores e Reagentes , Camundongos , Camundongos Endogâmicos BALB C , Compostos Orgânicos , Baço/citologia , Baço/efeitos dos fármacos
11.
Proteins ; 50(4): 600-8, 2003 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-12577266

RESUMO

Fold recognition techniques assist the exploration of protein structures, and web-based servers are part of the standard set of tools used in the analysis of biochemical problems. Despite their success, current methods are only able to predict the correct fold in a relatively small number of cases. We propose an approach that improves the selection of correct folds from among the results of two methods implemented as web servers (SAMT99 and 3DPSSM). Our approach is based on the training of a system of neural networks with models generated by the servers and a set of associated characteristics such as the quality of the sequence-structure alignment, distribution of sequence features (sequence-conserved positions and apolar residues), and compactness of the resulting models. Our results show that it is possible to detect adequate folds to model 80% of the sequences with a high level of confidence. The improvements achieved by taking into account sequence characteristics open the door to future improvements by directly including such factors in the step of model generation. This approach has been implemented as an automatic system LIBELLULA, available as a public web server at http://www.pdg.cnb.uam.es/servers/libellula.html.


Assuntos
Redes Neurais de Computação , Conformação Proteica , Proteínas/química , Homologia Estrutural de Proteína , Internet , Dobramento de Proteína , Sensibilidade e Especificidade , Alinhamento de Sequência
12.
Toxicon ; 41(1): 65-70, 2003 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-12467663

RESUMO

The effect of sodium dodecyl sulfate (SDS) upon the conformation and hemolytic activity of St I and St II strongly depends on its concentration. At relatively low surfactant concentrations (ca. 0.5-5mM range) the surfactant leads to the formation of aggregates, as suggested by the turbidity observed even at relatively low (micromolar range) protein concentrations. In this surfactant range, the proteins show an increase in intrinsic fluorescence intensity and reduced quenching by acrylamide, with an almost total loss of its hemolytic activity. At higher surfactant concentrations the protein adducts disaggregates. This produces a decrease in fluorescence intensity, increase in quenching efficiency by acrylamide, loss of the native tertiary conformation (as reported by the near UV-CD spectra), and increase in alpha-helix content (as evidenced by the far UV-CD spectra). However, and in spite of these substantial changes, the toxins partially recover their hemolytic activity. The reasons for this recovering of the activity at high surfactant concentrations is discussed.


Assuntos
Venenos de Cnidários/farmacologia , Proteínas Hemolisinas/farmacologia , Hemólise/efeitos dos fármacos , Dodecilsulfato de Sódio/farmacologia , Tensoativos/farmacologia , Animais , Dicroísmo Circular , Venenos de Cnidários/química , Relação Dose-Resposta a Droga , Eritrócitos/efeitos dos fármacos , Proteínas Hemolisinas/química , Humanos , Compostos Orgânicos , Conformação Proteica/efeitos dos fármacos , Anêmonas-do-Mar , Dodecilsulfato de Sódio/administração & dosagem , Espectrometria de Fluorescência , Tensoativos/administração & dosagem
13.
Bioinformatics ; 17(12): 1242-3, 2001 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-11751240

RESUMO

UNLABELLED: Evaluation of protein structure prediction methods is difficult and time-consuming. Here, we describe EVA, a web server for assessing protein structure prediction methods, in an automated, continuous and large-scale fashion. Currently, EVA evaluates the performance of a variety of prediction methods available through the internet. Every week, the sequences of the latest experimentally determined protein structures are sent to prediction servers, results are collected, performance is evaluated, and a summary is published on the web. EVA has so far collected data for more than 3000 protein chains. These results may provide valuable insight to both developers and users of prediction methods. AVAILABILITY: http://cubic.bioc.columbia.edu/eva. CONTACT: eva@cubic.bioc.columbia.edu


Assuntos
Conformação Proteica , Proteínas/análise , Software , Automação , Internet
14.
Proteins ; 45(4): 372-81, 2001 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-11746685

RESUMO

The manganese-stabilizing protein (PsbO) is an essential component of photosystem II (PSII) and is present in all oxyphotosynthetic organisms. PsbO allows correct water splitting and oxygen evolution by stabilizing the reactions driven by the manganese cluster. Despite its important role, its structure and detailed functional mechanism are still unknown. In this article we propose a structural model based on fold recognition and molecular modeling. This model has additional support from a study of the distribution of characteristics of the PsbO sequence family, such as the distribution of conserved, apolar, tree-determinants, and correlated positions. Our threading results consistently showed PsbO as an all-beta (beta) protein, with two homologous beta domains of approximately 120 amino acids linked by a flexible Proline-Glycine-Glycine (PGG) motif. These features are compatible with a general elongated and flexible architecture, in which the two domains form a sandwich-type structure with Greek key topology. The first domain is predicted to include 8 to 9 beta-strands, the second domain 6 to 7 beta-strands. An Ig-like beta-sandwich structure was selected as a template to build the 3-D model. The second domain has, between the strands, long-loops rich in Pro and Gly that are difficult to model. One of these long loops includes a highly conserved region (between P148 and P174) and a short alpha-helix (between E181 and N188)). These regions are characteristic parts of PsbO and show that the second domain is not so similar to the template. Overall, the model was able to account for much of the experimental data reported by several authors, and it would allow the detection of key residues and regions that are proposed in this article as essential for the structure and function of PsbO.


Assuntos
Modelos Moleculares , Complexo de Proteínas do Centro de Reação Fotossintética/química , Complexo de Proteína do Fotossistema II , Algoritmos , Sequência Conservada , Métodos , Estrutura Terciária de Proteína , Alinhamento de Sequência , Relação Estrutura-Atividade
15.
Protein Eng ; 14(9): 609-14, 2001 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-11707606

RESUMO

Deciphering the network of protein interactions that underlines cellular operations has become one of the main tasks of proteomics and computational biology. Recently, a set of bioinformatics approaches has emerged for the prediction of possible interactions by combining sequence and genomic information. Even though the initial results are very promising, the current methods are still far from perfect. We propose here a new way of discovering possible protein-protein interactions based on the comparison of the evolutionary distances between the sequences of the associated protein families, an idea based on previous observations of correspondence between the phylogenetic trees of associated proteins in systems such as ligands and receptors. Here, we extend the approach to different test sets, including the statistical evaluation of their capacity to predict protein interactions. To demonstrate the possibilities of the system to perform large-scale predictions of interactions, we present the application to a collection of more than 67 000 pairs of E.coli proteins, of which 2742 are predicted to correspond to interacting proteins.


Assuntos
Biologia Computacional/métodos , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Filogenia , Chaperonina 60/química , Chaperonina 60/genética , Chaperonina 60/metabolismo , Proteínas de Escherichia coli/química , Evolução Molecular , Proteínas de Ligação ao GTP/química , Proteínas de Ligação ao GTP/genética , Proteínas de Ligação ao GTP/metabolismo , Genoma Bacteriano , Glutamato-tRNA Ligase/química , Glutamato-tRNA Ligase/genética , Glutamato-tRNA Ligase/metabolismo , Estrutura Terciária de Proteína , Proteoma/química , Proteoma/genética , Proteoma/metabolismo , Proteínas Ribossômicas/química , Proteínas Ribossômicas/genética , Proteínas Ribossômicas/metabolismo , Alinhamento de Sequência , Análise de Sequência de Proteína , Estatística como Assunto
16.
Toxicon ; 39(10): 1547-60, 2001 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-11478962

RESUMO

Sticholysins I and II are two highly hemolytic polypeptides purified from the Caribbean Sea anemone Stichodactyla helianthus. Their high sequence homology (93%) indicates that they correspond to isoforms of the same hemolysin. The spectroscopic measurements show a close similarity in the secondary structure content, conformation and stability of both toxins. Exposure of the toxins to high pHs (>11), a free radical source (AAPH), urea or temperature produce permanent changes in the toxin that lead to a significant loss of HA. It is significant to note that this loss of hemolytic activity occurs when other indicators, probably with the only exception of near-UV CD spectra, barely detect changes in the protein structure. This emphasizes the sensitivity of the protein function to changes in the macromolecule conformation. The most noticeable difference between both toxins is the considerably higher activity of St II, both measured in terms of erythrocyte internal K(+) exit or hemolysis; which is related to enthalpic factors. This difference is not due to an incomplete association of St I to the membrane. We consider then that the different pore forming capacity of both toxins in erythrocytes can be explained in terms of the difference in charge of the N-terminal fragment, than can considerably reduce the St I insertion rate in the membrane probably due to the negatively charged outer leaflet of the red blood cell, without a significant reduction of its capacity to bind to the cell membrane. This electrostatic effect, together with a slightly more relaxed structure in St II, could explain the higher pore forming capacity of St II in the red blood cell membrane.


Assuntos
Amidinas/metabolismo , Venenos de Cnidários/química , Eritrócitos/fisiologia , Proteínas Hemolisinas/metabolismo , Lipossomos/química , Lipossomos/metabolismo , Neurotoxinas/química , Neurotoxinas/metabolismo , Potássio/fisiologia , Isoformas de Proteínas/química , Isoformas de Proteínas/metabolismo , Anêmonas-do-Mar/patogenicidade , Animais , Dicroísmo Circular , Venenos de Cnidários/toxicidade , Eritrócitos/efeitos dos fármacos , Proteínas Hemolisinas/efeitos dos fármacos , Humanos , Concentração de Íons de Hidrogênio , Oxidantes/metabolismo , Potássio/análise , Conformação Proteica , Estrutura Secundária de Proteína , Homologia de Sequência de Aminoácidos , Espectrometria de Fluorescência , Temperatura , Fatores de Tempo
17.
Biophys J ; 80(6): 2761-74, 2001 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-11371451

RESUMO

Sticholysin I and II (St I and St II), two basic cytolysins purified from the Caribbean sea anemone Stichodactyla helianthus, efficiently permeabilize lipid vesicles by forming pores in their membranes. A general characteristic of these toxins is their preference for membranes containing sphingomyelin (SM). As a consequence, vesicles formed by equimolar mixtures of SM with phosphatidylcholine (PC) are very good targets for St I and II. To better characterize the lipid dependence of the cytolysin-membrane interaction, we have now evaluated the effect of including different lipids in the composition of the vesicles. We observed that at low doses of either St I or St II vesicles composed of SM and phosphatidic acid (PA) were permeabilized faster and to a higher extent than vesicles of PC and SM. As in the case of PC/SM mixtures, permeabilization was optimal when the molar ratio of PA/SM was ~1. The preference for membranes containing PA was confirmed by inhibition experiments in which the hemolytic activity of St I was diminished by pre-incubation with vesicles of different composition. The inclusion of even small proportions of PA into PC/SM LUVs led to a marked increase in calcein release caused by both St I and St II, reaching maximal effect at ~5 mol % of PA. Inclusion of other negatively charged lipids (phosphatidylserine (PS), phosphatidylglycerol (PG), phosphatidylinositol (PI), or cardiolipin (CL)), all at 5 mol %, also elicited an increase in calcein release, the potency being in the order CL approximately PA >> PG approximately PI approximately PS. However, some boosting effect was also obtained, including the zwitterionic lipid phosphatidylethanolamine (PE) or even, albeit to a lesser extent, the positively charged lipid stearylamine (SA). This indicated that the effect was not mediated by electrostatic interactions between the cytolysin and the negative surface of the vesicles. In fact, increasing the ionic strength of the medium had only a small inhibitory effect on the interaction, but this was actually larger with uncharged vesicles than with negatively charged vesicles. A study of the fluidity of the different vesicles, probed by the environment-sensitive fluorescent dye diphenylhexatriene (DPH), showed that toxin activity was also not correlated to the average membrane fluidity. It is suggested that the insertion of the toxin channel could imply the formation in the bilayer of a nonlamellar structure, a toroidal lipid pore. In this case, the presence of lipids favoring a nonlamellar phase, in particular PA and CL, strong inducers of negative curvature in the bilayer, could help in the formation of the pore. This possibility is confirmed by the fact that the formation of toxin pores strongly promotes the rate of transbilayer movement of lipid molecules, which indicates local disruption of the lamellar structure.


Assuntos
Permeabilidade da Membrana Celular , Venenos de Cnidários/metabolismo , Proteínas Hemolisinas/metabolismo , Lipossomos/química , Lipossomos/metabolismo , Lipídeos de Membrana/metabolismo , Anêmonas-do-Mar , Animais , Cardiolipinas/metabolismo , Fluoresceínas/metabolismo , Hemólise , Modelos Biológicos , Compostos Orgânicos , Concentração Osmolar , Ácidos Fosfatídicos/metabolismo , Fosfatidilgliceróis/metabolismo , Fosfatidilinositóis/metabolismo , Fosfatidilserinas/metabolismo , Espectrometria de Fluorescência , Eletricidade Estática
18.
Proteins ; Suppl 5: 171-83, 2001.
Artigo em Inglês | MEDLINE | ID: mdl-11835495

RESUMO

The results of the second Critical Assessment of Fully Automated Structure Prediction (CAFASP2) are presented. The goals of CAFASP are to (i) assess the performance of fully automatic web servers for structure prediction, by using the same blind prediction targets as those used at CASP4, (ii) inform the community of users about the capabilities of the servers, (iii) allow human groups participating in CASP to use and analyze the results of the servers while preparing their nonautomated predictions for CASP, and (iv) compare the performance of the automated servers to that of the human-expert groups of CASP. More than 30 servers from around the world participated in CAFASP2, covering all categories of structure prediction. The category with the largest participation was fold recognition, where 24 CAFASP servers filed predictions along with 103 other CASP human groups. The CAFASP evaluation indicated that it is difficult to establish an exact ranking of the servers because the number of prediction targets was relatively small and the differences among many servers were also small. However, roughly a group of five "best" fold recognition servers could be identified. The CASP evaluation identified the same group of top servers albeit with a slightly different relative order. Both evaluations ranked a semiautomated method named CAFASP-CONSENSUS, that filed predictions using the CAFASP results of the servers, above any of the individual servers. Although the predictions of the CAFASP servers were available to human CASP predictors before the CASP submission deadline, the CASP assessment identified only 11 human groups that performed better than the best server. Furthermore, about one fourth of the top 30 performing groups corresponded to automated servers. At least half of the top 11 groups corresponded to human groups that also had a server in CAFASP or to human groups that used the CAFASP results to prepare their predictions. In particular, the CAFASP-CONSENSUS group was ranked 7. This shows that the automated predictions of the servers can be very helpful to human predictors. We conclude that as servers continue to improve, they will become increasingly important in any prediction process, especially when dealing with genome-scale prediction tasks. We expect that in the near future, the performance difference between humans and machines will continue to narrow and that fully automated structure prediction will become an effective companion and complement to experimental structural genomics.


Assuntos
Conformação Proteica , Software , Automação , Modelos Moleculares , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Análise de Sequência de Proteína , Homologia de Sequência
19.
Toxicon ; 39(2-3): 187-94, 2001.
Artigo em Inglês | MEDLINE | ID: mdl-10978735

RESUMO

Two hemolysins, Sticholysin I (St I) and Sticholysin II (St II) were purified from the sea anemone Stichodactyla helianthus combining gel filtration and ion exchange chromatography. The amino acid composition of both cytolysins was determined revealing a high proportion of glycine, lysine, tyrosine and non-polar amino acids (alanine, leucine and valine). Cysteine was not found in either polypeptide. Molecular masses of St I and St II were 19401 and 19290 Da, respectively. N-terminal sequence analysis of St I and St II showed a high homology between them suggesting they are isoforms of the same cytolysin. Compared with other sea anemone cytolysins, St I and St II contain a 22 amino acid insertion fragment also present in Eq T II/Tn C and probably in CaT I and Hm T and absent in C III, the major hemolysin previously reported in this anemone.


Assuntos
Venenos de Cnidários/isolamento & purificação , Proteínas Hemolisinas/isolamento & purificação , Peptídeos/isolamento & purificação , Anêmonas-do-Mar , Sequência de Aminoácidos , Animais , Cromatografia em Gel , Cromatografia Líquida de Alta Pressão , Venenos de Cnidários/análise , Proteínas Hemolisinas/análise , Dados de Sequência Molecular , Compostos Orgânicos , Peptídeos/análise
20.
Pediatr Res ; 48(1): 96-103, 2000 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-10879806

RESUMO

It is well known that the sex difference in body growth at puberty is modulated by a complex interplay between sex steroids and somatotropic axis; however, the exact role played by sex steroids remains a matter of controversy. The aim of this study was to assess the mechanisms by which sex steroids regulate body growth during pubertal development. Flutamide, a non-steroid-blocking androgen receptor, was subcutaneously administered to 30-d-old male Wistar rats for 4 wk. The blockade of the androgen receptor led to a marked elevation in serum testosterone and an increment in serum estradiol. Flutamide administration decreased body weight gain, serum IGF-I levels, hepatic IGF-I mRNA, and GH receptor mRNA content. There were no significant changes in serum GH concentration, pituitary GH reserve, and pituitary GH mRNA content. Flutamide lowered hypothalamic somatostatin mRNA content and augmented hypothalamic immunoreactive somatostatin stores, but did not alter hypothalamic immunoreactive GH-releasing factor stores. Our findings indicate that during pubertal development of the male rat, the imbalance between androgen and estrogen actions determines an abnormal somatic growth, which is at least partly exerted through the peripheral or hepatic modification of the somatotropic axis that occurs under the high or exclusive action of estrogens. Potential implication of coincident sex-specific regulated mode of pulsatile GH secretion cannot be excluded from this random serum GH sample study.


Assuntos
Antagonistas de Receptores de Andrógenos , Flutamida/farmacologia , Maturidade Sexual/efeitos dos fármacos , Aumento de Peso/efeitos dos fármacos , Envelhecimento , Animais , Regulação da Expressão Gênica/efeitos dos fármacos , Hormônio do Crescimento/sangue , Sistema Hipotálamo-Hipofisário/efeitos dos fármacos , Sistema Hipotálamo-Hipofisário/fisiologia , Fator de Crescimento Insulin-Like I/genética , Fator de Crescimento Insulin-Like I/metabolismo , Fígado/metabolismo , Masculino , Ratos , Ratos Wistar , Receptores da Somatotropina/genética , Transcrição Gênica/efeitos dos fármacos
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