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1.
Methods Mol Biol ; 2457: 57-74, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35349132

RESUMO

Plant plasmodesmata (PD) are complex intercellular channels consisting of a thin endoplasmic reticulum (ER) tubule enveloped by the plasma membrane (PM). PD were first observed by electron microscopy about 50 years ago and, since, numerous studies in transmission and scanning electron microscopy have provided important information regarding their overall organization, revealing at the same time their diversity in terms of structure and morphology. However, and despite the fact that PD cell-cell communication is of critical importance for plant growth, development, cellular patterning, and response to biotic and abiotic stresses, linking their structural organization to their functional state has been proven difficult. This is in part due to their small size (20-50 nm in diameter) and the difficulty to resolve these structures in three dimensions at nanometer resolution to provide details of their internal organization.In this protocol, we provide in detail a complete process to produce high-resolution transmission electron tomograms of PD. We describe the preparation of the plant sample using high-pressure cryofixation and cryo-substitution. We also describe how to prepare filmed grids and how to cut and collect the sections using an ultramicrotome. We explain how to acquire a tilt series and how to reconstruct a tomogram from it using the IMOD software. We also give a few guidelines on segmentation of the reconstructed tomogram.


Assuntos
Tomografia com Microscopia Eletrônica , Plasmodesmos , Tomografia com Microscopia Eletrônica/métodos , Microscopia Eletrônica de Varredura , Microtomia , Células Vegetais , Plasmodesmos/metabolismo
2.
Dev Comp Immunol ; 126: 104240, 2022 01.
Artigo em Inglês | MEDLINE | ID: mdl-34461159

RESUMO

Accumulating evidence supports the crucial role intestinal microbiota and their metabolites play in the homeostasis of organisms. An important class of metabolites that have been shown to affect the immune system are short chain fatty acids (SCFAs). These SCFAs can affect the host cells via passive diffusion or via ligation to receptors, among others G-protein coupled receptor (GPR) 41 and 43. GPR41 and GPR43 are both part of a family of GPR40-related receptors. Mammalian studies have shown an important role for GPR41 and GPR43 in the modulation of immune responses by SCFAs. However, up till date, no validated coding sequences for orthologues of these SCFA receptors have been published for teleost fish. We used genomic resources and cDNA cloning, to identify and validate ten coding sequences for gpr40L genes in common carp. Phylogenetic analysis showed a division into three subclasses, putatively named class a, b and c, and showed the common carp genes had a closer phylogenetic relationship to mammalian GPR43 than to mammalian GPR41. Synteny analysis revealed a clear conservation of syntenic relationships between gpr40L in the genomes of spotted gar and common carp with the relevant region in the human genome. This conservation of synteny validates the genes identified, as gpr40L. Finally, presence of gpr40L genes was investigated in silico for genomes of 25 different, mostly teleost, fish species largely confirming the observations for gpr40L of common carp with regards to both, subdivision in three subclasses a-c and conservation of synteny. Our data provide an important first step towards an understanding of the role and function of receptors for SCFAs and immunomodulation in fish.


Assuntos
Carpas , Ácidos Graxos não Esterificados , Animais , Carpas/genética , Carpas/metabolismo , Ácidos Graxos Voláteis/metabolismo , Mamíferos , Filogenia , Receptores Acoplados a Proteínas G/genética , Receptores Acoplados a Proteínas G/metabolismo
3.
Fish Shellfish Immunol ; 115: 58-69, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-34033909

RESUMO

Quantitative real-time PCR is one of the most widely used techniques for measuring changes in the expression of target transcripts due to its sensitivity, specificity, and cost-effectiveness. However, the essential step that determines appropriate and correct data interpretation is the selection of proper endogenous control genes. Identifying useful reference genes with stable expression is critical for accurate normalization and precise results. Functional divergence of duplicated genes in tetraploid species, like common carp, can complicate the choice for a proper reference gene. In the present study, we determined the expression stability of duplicated genes of 40s, b2m, ef1α, gapdh, g6pd, and odc1 in different tissues of common carp (Cyprinus carpio L.). Gene expression analysis comprised healthy control fish, fish under bacterial and parasitic infections, and across the early stage of common carp development. Obtained data were compared with the actb gene, which is used widely as a reference in RT-qPCR analysis. The application of the three different algorithms - geNorm, NormFinder, BestKeeper, allowed comparative evaluation of the expression stability of the tested genes. Subsequently, the RefFinder, a web-based tool, was used to rank the examined housekeeping genes comprehensively. We demonstrate variable transcription stability levels in the examined mRNAs as well as differences in expression between paralog gene copies. The 40s, b2m, ef1α and actb genes showed the most stable expression across all physiological conditions and tissues. The gapdh, odc1, and g6pd gene variants demonstrated lower stability. Differences in expression patterns between duplicated genes underline the possibility of functional divergence between them. This aspect should be considered in polyploid species before selecting the reference gene(s). Our study also points on the importance of choice for a reference gene (paralog) when expressing newly identified genes and the spatial expression profile is performed. SUBJECTS: Aquaculture, Molecular Biology, Fish Science.


Assuntos
Carpas/genética , Perfilação da Expressão Gênica/veterinária , Genes Duplicados , Genes Essenciais , Animais , Duplicação Gênica
4.
Sci Rep ; 11(1): 8221, 2021 04 15.
Artigo em Inglês | MEDLINE | ID: mdl-33859242

RESUMO

Sustainable aquafeed production requires fishmeal replacement, leading to an increasing use of plant-derived ingredients. As a consequence, higher levels of antinutritional substances, such as non-starch polysaccharides and phytate, are present in aquafeeds, with negative effects on fish performance, nutrient digestibility and overall gut health. To alleviate these negative effects, providing exogenous digestive enzymes and/or probiotics can be an effective solution. In this study, we tested the effect of dietary supplementation of enzymes (phytase and xylanase) and probiotics (three strains of Bacillus amyloliquefaciens) on nutrient digestion kinetics and volatile fatty acid content along the gut, and the distal gut microbiome diversity in Nile tilapia. Chyme volatile fatty content was increased with probiotic supplementation in the proximal gut, while lactate content, measured for the first time in vivo in fish, decreased with enzymes along the gut. Enzyme supplementation enhanced crude protein, Ca and P digestibility in proximal and middle gut. Enzymes and probiotics supplementation enhanced microbial interactions as shown by network analysis, while increased the abundance of lactic acid bacteria and Bacillus species. Such results suggest that supplementation with exogenous enzymes and probiotics increases nutrient availability, while at the same time benefits gut health and contributes to a more stable microbiome environment.


Assuntos
Ciclídeos , Digestão/fisiologia , Enzimas , Microbioma Gastrointestinal/fisiologia , Probióticos , 6-Fitase/administração & dosagem , 6-Fitase/farmacocinética , Ração Animal , Animais , Ciclídeos/metabolismo , Ciclídeos/microbiologia , Dieta , Suplementos Nutricionais , Enzimas/administração & dosagem , Enzimas/farmacocinética , Ácidos Graxos Voláteis/análise , Ácidos Graxos Voláteis/metabolismo , Microbioma Gastrointestinal/efeitos dos fármacos , Cinética , Interações Microbianas/fisiologia , Probióticos/administração & dosagem , Probióticos/farmacocinética , Xilosidases/administração & dosagem , Xilosidases/farmacocinética
5.
Front Immunol ; 12: 761820, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-35069532

RESUMO

Dietary supplementation of fish with ß-glucans has been commonly associated with immunomodulation and generally accepted as beneficial for fish health. However, to date the exact mechanisms of immunomodulation by ß-glucan supplementation in fish have remained elusive. In mammals, a clear relation between high-fibre diets, such as those including ß-glucans, and diet-induced immunomodulation via intestinal microbiota and associated metabolites has been observed. In this study, first we describe by 16S rRNA sequencing the active naive microbiota of common carp intestine. Based on the abundance of the genus Bacteroides, well known for their capacity to degrade and ferment carbohydrates, we hypothesize that common carp intestinal microbiota could ferment dietary ß-glucans. Indeed, two different ß-glucan preparations (curdlan and MacroGard®) were both fermented in vitro, albeit with distinct fermentation dynamics and distinct production of short-chain fatty acids (SCFA). Second, we describe the potential immunomodulatory effects of the three dominant SCFAs (acetate, butyrate, and propionate) on head kidney leukocytes, showing effects on both nitric oxide production and expression of several cytokines (il-1b, il-6, tnfα, and il-10) in vitro. Interestingly, we also observed a regulation of expression of several gpr40L genes, which were recently described as putative SCFA receptors. Third, we describe how a single in vivo oral gavage of carp with MacroGard® modulated simultaneously, the expression of several pro-inflammatory genes (il-1b, il-6, tnfα), type I IFN-associated genes (tlr3.1, mx3), and three specific gpr40L genes. The in vivo observations provide indirect support to our in vitro data and the possible role of SCFAs in ß-glucan-induced immunomodulation. We discuss how ß-glucan-induced immunomodulatory effects can be explained, at least in part, by fermentation of MacroGard® by specific bacteria, part of the naive microbiota of common carp intestine, and how a subsequent production of SFCAs could possibly explain immunomodulation by ß-glucan via SCFA receptors present on leukocytes.


Assuntos
Ração Animal , Carpas , Ácidos Graxos Voláteis/imunologia , Microbioma Gastrointestinal , Imunomodulação/efeitos dos fármacos , beta-Glucanas/farmacologia , Animais , Carpas/imunologia , Carpas/microbiologia , Microbioma Gastrointestinal/efeitos dos fármacos , Microbioma Gastrointestinal/imunologia
6.
Sci Rep ; 10(1): 13470, 2020 08 10.
Artigo em Inglês | MEDLINE | ID: mdl-32778701

RESUMO

Mammalian macrophages can adopt polarization states that, depending on the exact stimuli present in their extracellular environment, can lead to very different functions. Although these different polarization states have been shown primarily for macrophages of humans and mice, it is likely that polarized macrophages with corresponding phenotypes exist across mammals. Evidence of functional conservation in macrophages from teleost fish suggests that the same, or at least comparable polarization states should also be present in teleosts. However, corresponding transcriptional profiles of marker genes have not been reported thus far. In this study we confirm that macrophages from common carp can polarize into M1- and M2 phenotypes with conserved functions and corresponding transcriptional profiles compared to mammalian macrophages. Carp M1 macrophages show increased production of nitric oxide and a transcriptional profile with increased pro-inflammatory cytokines and mediators, including il6, il12 and saa. Carp M2 macrophages show increased arginase activity and a transcriptional profile with increased anti-inflammatory mediators, including cyr61, timp2b and tgm2b. Our RNA sequencing approach allowed us to list, in an unbiased manner, markers discriminating between M1 and M2 macrophages of teleost fish. We discuss the importance of our findings for the evaluation of immunostimulants for aquaculture and for the identification of gene targets to generate transgenic zebrafish for detailed studies on M1 and M2 macrophages. Above all, we discuss the striking degree of evolutionary conservation of macrophage polarization in a lower vertebrate.


Assuntos
Carpas/genética , Polaridade Celular/fisiologia , Macrófagos/metabolismo , Animais , Anti-Inflamatórios/farmacologia , Carpas/imunologia , Citocinas/farmacologia , Peixes , Interleucina-12/farmacologia , Ativação de Macrófagos , Macrófagos/citologia , Macrófagos/fisiologia , Óxido Nítrico/farmacologia , Análise de Sequência de RNA/métodos , Transdução de Sinais , Transcriptoma
7.
Fish Shellfish Immunol ; 98: 564-573, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-32001354

RESUMO

A relatively large repertoire of type I interferon (IFN) genes is apparent in rainbow trout/Atlantic salmon, that includes six different IFN subgroups (IFNa-IFNf) belonging to the three known type I IFN groups (1-3) in bony fish. Whether this is true for other salmonids, and how the various type I subgroups evolved in teleost fish was studied using the extensive genomic resources available for fish. This confirmed that salmonids, at least the Salmoninae, indeed have a complex (in terms of IFN subgroups present) and large (number of genes) IFN repertoire relative to other teleost fish. This is in part a consequence of the salmonid 4 R WGD that duplicated the growth hormone (GH) locus in which type I IFNs are generally located. Divergence of the IFN genes at the two GH loci was apparent but was not seen in common carp, a species that also underwent an independent 4 R WGD. However, expansion of IFN gene number can be found at the CD79b locus of some perciform fish (both freshwater and marine), with expansion of the IFNd gene repertoire. Curiously the primordial gene order of GH-IFNc-IFNb-IFNa-IFNe is largely retained in many teleost lineages and likely reflects the tandem duplications that are taking place to increase IFN gene number. With respect to the evolution of the IFN subgroups, a complex acquisition and/or loss has occurred in different teleost lineages, with complete loss of IFN genes at the GH or CD79b locus in some species, and reduction to a single IFN subgroup in others. It becomes clear that there are many variations to be discovered regarding the mechanisms by which fish elicit protective (antiviral) immune responses.


Assuntos
Evolução Biológica , Genoma , Interferons/genética , Salmonidae/genética , Animais , Duplicação Gênica , Interferons/classificação , Salmonidae/imunologia
8.
Bio Protoc ; 10(5): e3545, 2020 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-33659519

RESUMO

Intercellular communication plays a crucial role in the establishment of multicellular organisms by organizing and coordinating growth, development and defence responses. In plants, cell-to-cell communication takes place through nanometric membrane channels called plasmodesmata (PD). Understanding how PD dictate cellular connectivity greatly depends on a comprehensive knowledge of the molecular composition and the functional characterization of PD components. While proteomic and genetic approaches have been crucial to identify PD-associated proteins, in vivo fluorescence microscopy combined with fluorescent protein tagging is equally crucial to visualise the subcellular localisation of a protein of interest and gain knowledge about their dynamic behaviour. In this protocol we describe in detail a robust method for quantifying the degree of association of a given protein with PD, through ratiometric fluorescent intensity using confocal microscopy. Although developed for N. benthamiana and Arabidopsis, this protocol can be adapted to other plant species.

9.
Curr Opin Plant Biol ; 53: 80-89, 2020 02.
Artigo em Inglês | MEDLINE | ID: mdl-31805513

RESUMO

Plasmodesmata pores control the entry and exit of molecules at cell-to-cell boundaries. Hundreds of pores perforate the plant cell wall, connecting cells together and establishing direct cytosolic and membrane continuity. This ability to connect cells in such a way is a hallmark of plant physiology and is thought to have allowed sessile multicellularity in Plantae kingdom. Indeed, plasmodesmata-mediated cell-to-cell signalling is fundamental to many plant-related processes. In fact, there are so many facets of plant biology under the control of plasmodesmata that it is hard to conceive how such tiny structures can do so much. While they provide 'open doors' between cells, they also need to guarantee cellular identities and territories by selectively transporting molecules. Although plasmodesmata operating mode remains difficult to grasp, little by little plant scientists are divulging their secrets. In this review, we highlight novel functions of cell-to-cell signalling and share recent insights into how plasmodesmata structural and molecular signatures confer functional specificity and plasticity to these unique cellular machines.


Assuntos
Comunicação Celular , Plasmodesmos , Membrana Celular , Parede Celular , Fenômenos Fisiológicos Vegetais
10.
BMC Genomics ; 20(1): 1019, 2019 Dec 26.
Artigo em Inglês | MEDLINE | ID: mdl-31878870

RESUMO

BACKGROUND: Infectious disease outbreaks form major setbacks to aquaculture production and to further development of this important sector. Cyprinid herpes virus-3 (CyHV-3) is a dsDNA virus widely hampering production of common carp (Cyprinus carpio), one of the most farmed fish species worldwide. Genetically disease resistant strains are highly sought after as a sustainable solution to this problem. To study the genetic basis and cellular pathways underlying disease resistance, RNA-Seq was used to characterize transcriptional responses of susceptible and resistant fish at day 4 after CyHV-3 infection. RESULTS: In susceptible fish, over four times more differentially expressed genes were up-regulated between day 0 and 4 compared to resistant fish. Susceptible and resistant fish responded distinctively to infection as only 55 (9%) of the up-regulated genes were shared by these two fish types. Susceptible fish elicited a typical anti-viral response, involving interferon and interferon responsive genes, earlier than resistant fish did. Furthermore, chemokine profiles indicated that the two fish types elicited different cellular immunity responses. A comparative phylogenetic approach assisted in chemokine copies annotation pointing to different orthologous copies common to bony-fishes and even carp-specific paralogs that were differentially regulated and contributed to the different response of these two fish types. Susceptible fish up-regulated more ccl19 chemokines, which attract T-cells and macrophages, the anti-viral role of which is established, whereas resistant fish up-regulated more cxcl8/il8 chemokines, which attract neutrophils, the antiviral role of which is unfamiliar. CONCLUSIONS: Taken together, by pointing out transcriptional differences between susceptible and resistant fish in response to CyHV-3 infection, this study unraveled possible genes and pathways that take part in disease resistance mechanisms in fish and thus, enhances our understanding of fish immunogenetics and supports the development of sustainable and safe aquaculture.


Assuntos
Carpas/genética , Carpas/virologia , Resistência à Doença/genética , Doenças dos Peixes/virologia , Predisposição Genética para Doença/genética , Herpesviridae/fisiologia , Transcrição Gênica , Animais , Doenças dos Peixes/imunologia , Locos de Características Quantitativas/genética
12.
EMBO Rep ; 20(8): e47182, 2019 08.
Artigo em Inglês | MEDLINE | ID: mdl-31286648

RESUMO

In eukaryotes, membrane contact sites (MCS) allow direct communication between organelles. Plants have evolved a unique type of MCS, inside intercellular pores, the plasmodesmata, where endoplasmic reticulum (ER)-plasma membrane (PM) contacts coincide with regulation of cell-to-cell signalling. The molecular mechanism and function of membrane tethering within plasmodesmata remain unknown. Here, we show that the multiple C2 domains and transmembrane region protein (MCTP) family, key regulators of cell-to-cell signalling in plants, act as ER-PM tethers specifically at plasmodesmata. We report that MCTPs are plasmodesmata proteins that insert into the ER via their transmembrane region while their C2 domains dock to the PM through interaction with anionic phospholipids. A Atmctp3/Atmctp4 loss of function mutant induces plant developmental defects, impaired plasmodesmata function and composition, while MCTP4 expression in a yeast Δtether mutant partially restores ER-PM tethering. Our data suggest that MCTPs are unique membrane tethers controlling both ER-PM contacts and cell-to-cell signalling.


Assuntos
Proteínas de Arabidopsis/genética , Arabidopsis/genética , Regulação da Expressão Gênica de Plantas , Glicosiltransferases/genética , Proteínas de Membrana/genética , Plasmodesmos/genética , Arabidopsis/citologia , Arabidopsis/crescimento & desenvolvimento , Membrana Celular/metabolismo , Células Cultivadas , Retículo Endoplasmático/metabolismo , Perfilação da Expressão Gênica , Regulação da Expressão Gênica no Desenvolvimento , Genes Reporter , Glicosiltransferases/deficiência , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Humanos , Proteínas Luminescentes/genética , Proteínas Luminescentes/metabolismo , Proteínas de Membrana/deficiência , Fosfolipídeos/metabolismo , Células Vegetais , Plantas Geneticamente Modificadas , Plasmodesmos/metabolismo , Plasmodesmos/ultraestrutura , Domínios Proteicos , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo , Transdução de Sinais , Nicotiana/genética , Nicotiana/metabolismo , Proteína Vermelha Fluorescente
13.
Nat Plants ; 5(6): 604-615, 2019 06.
Artigo em Inglês | MEDLINE | ID: mdl-31182845

RESUMO

During phloem unloading, multiple cell-to-cell transport events move organic substances to the root meristem. Although the primary unloading event from the sieve elements to the phloem pole pericycle has been characterized to some extent, little is known about post-sieve element unloading. Here, we report a novel gene, PHLOEM UNLOADING MODULATOR (PLM), in the absence of which plasmodesmata-mediated symplastic transport through the phloem pole pericycle-endodermis interface is specifically enhanced. Increased unloading is attributable to a defect in the formation of the endoplasmic reticulum-plasma membrane tethers during plasmodesmal morphogenesis, resulting in the majority of pores lacking a visible cytoplasmic sleeve. PLM encodes a putative enzyme required for the biosynthesis of sphingolipids with very-long-chain fatty acid. Taken together, our results indicate that post-sieve element unloading involves sphingolipid metabolism, which affects plasmodesmal ultrastructure. They also raise the question of how and why plasmodesmata with no cytoplasmic sleeve facilitate molecular trafficking.


Assuntos
Proteínas de Arabidopsis/metabolismo , Arabidopsis/metabolismo , Proteínas de Membrana/metabolismo , Floema/metabolismo , Plasmodesmos/ultraestrutura , Esfingolipídeos/biossíntese , Arabidopsis/genética , Arabidopsis/ultraestrutura , Proteínas de Arabidopsis/genética , Genes de Plantas , Glucanos/metabolismo , Proteínas de Fluorescência Verde/metabolismo , Proteínas de Membrana/genética , Mutação , Raízes de Plantas/metabolismo , Plasmodesmos/metabolismo , Transferases (Outros Grupos de Fosfato Substituídos)/genética , Transferases (Outros Grupos de Fosfato Substituídos)/metabolismo
14.
J Immunol ; 203(1): 216-224, 2019 07 01.
Artigo em Inglês | MEDLINE | ID: mdl-31127029

RESUMO

Trained immunity is a form of innate immune memory best described in mice and humans. Clear evidence of the evolutionary conservation of trained immunity in teleost fish is lacking. Given the evolutionary position of teleosts as early vertebrates with a fully developed immune system, we hypothesize that teleost myeloid cells show features of trained immunity common to those observed in mammalian macrophages. These would at least include the ability of fish macrophages to mount heightened responses to a secondary stimulus in a nonspecific manner. We established an in vitro model to study trained immunity in fish by adapting a well-described culture system of head kidney-derived macrophages of common carp. A soluble NOD-specific ligand and a soluble ß-glucan were used to train carp macrophages, after which cells were rested for 6 d prior to exposure to a secondary stimulus. Unstimulated trained macrophages displayed evidence of metabolic reprogramming as well as heightened phagocytosis and increased expression of the inflammatory cytokines il6 and tnf-α. Stimulated trained macrophages showed heightened production of reactive oxygen and nitrogen species as compared with the corresponding stimulated but untrained cells. We discuss the value of our findings for future studies on trained immunity in teleost fish.


Assuntos
Carpas/imunologia , Rim Cefálico/imunologia , Macrófagos/imunologia , Animais , Evolução Biológica , Células Cultivadas , Reprogramação Celular , Proteínas de Peixes/metabolismo , Imunidade , Imunização , Interleucina-6/metabolismo , Mamíferos , Oxigenases/imunologia , Fagocitose , Espécies Reativas de Oxigênio/metabolismo , Fator de Necrose Tumoral alfa/metabolismo , beta-Glucanas/imunologia
15.
Front Plant Sci ; 10: 198, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30846999

RESUMO

Understanding the mode of action of membrane contact sites (MCSs) across eukaryotic organisms at the near-atomic level to infer function at the cellular and tissue levels is a challenge scientists are currently facing. These peculiar systems dedicated to inter-organellar communication are perfect examples of cellular processes where the interplay between lipids and proteins is critical. In this mini review, we underline the link between membrane lipid environment, the recruitment of proteins at specialized membrane domains and the function of MCSs. More precisely, we want to give insights on the crucial role of lipids in defining the specificity of plant endoplasmic reticulum (ER)-plasma membrane (PM) MCSs and we further propose approaches to study them at multiple scales. Our goal is not so much to go into detailed description of MCSs, as there are numerous focused reviews on the subject, but rather try to pinpoint the critical elements defining those structures and give an original point of view by considering the subject from a near-atomic angle with a focus on lipids. We review current knowledge as to how lipids can define MCS territories, play a role in the recruitment and function of the MCS-associated proteins and in turn, how the lipid environment can be modified by proteins.

16.
Front Immunol ; 10: 280, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30863400

RESUMO

Immune-modulatory effects of ß-glucans are generally considered beneficial to fish health. Despite the frequent application of ß-glucans in aquaculture practice, the exact receptors and downstream signalling remains to be described for fish. In mammals, Dectin-1 is a member of the C-type lectin receptor (CLR) family and the best-described receptor for ß-glucans. In fish genomes, no clear homologue of Dectin-1 could be identified so far. Yet, in previous studies we could activate carp macrophages with curdlan, considered a Dectin-1-specific ß-(1,3)-glucan ligand in mammals. It was therefore proposed that immune-modulatory effects of ß-glucan in carp macrophages could be triggered by a member of the CLR family activating the classical CLR signalling pathway, different from Dectin-1. In the current study, we used primary macrophages of common carp to examine immune modulation by ß-glucans using transcriptome analysis of RNA isolated 6 h after stimulation with two different ß-glucan preparations. Pathway analysis of differentially expressed genes (DEGs) showed that both ß-glucans regulate a comparable signalling pathway typical of CLR activation. Carp genome analysis identified 239 genes encoding for proteins with at least one C-type Lectin Domains (CTLD). Narrowing the search for candidate ß-glucan receptors, based on the presence of a conserved glucan-binding motif, identified 13 genes encoding a WxH sugar-binding motif in their CTLD. These genes, however, were not expressed in macrophages. Instead, among the ß-glucan-stimulated DEGs, a total of six CTLD-encoding genes were significantly regulated, all of which were down-regulated in carp macrophages. Several candidates had a protein architecture similar to Dectin-1, therefore potential conservation of synteny of the mammalian Dectin-1 region was investigated by mining the zebrafish genome. Partial conservation of synteny with a region on the zebrafish chromosome 16 highlighted two genes as candidate ß-glucan receptor. Altogether, the regulation of a gene expression profile typical of a signalling pathway associated with CLR activation and, the identification of several candidate ß-glucan receptors, suggest that immune-modulatory effects of ß-glucan in carp macrophages could be a result of signalling mediated by a member of the CLR family.


Assuntos
Carpas/imunologia , Proteínas de Peixes/imunologia , Lectinas Tipo C/imunologia , Macrófagos/imunologia , Transcriptoma/imunologia , beta-Glucanas/imunologia , Animais , Carpas/genética , Carpas/metabolismo , Células Cultivadas , Proteínas de Peixes/genética , Proteínas de Peixes/metabolismo , Perfilação da Expressão Gênica/métodos , Ontologia Genética , Lectinas Tipo C/classificação , Lectinas Tipo C/genética , Macrófagos/metabolismo , Filogenia , Transdução de Sinais/genética , Transdução de Sinais/imunologia , Sintenia/genética , Sintenia/imunologia , Transcriptoma/genética , Peixe-Zebra/genética , Peixe-Zebra/imunologia , Peixe-Zebra/metabolismo , beta-Glucanas/metabolismo
17.
Front Immunol ; 8: 1340, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-29114248

RESUMO

Although spring viremia of carp virus (SVCV) can cause high mortalities in common carp, a commercial vaccine is not available for worldwide use. Here, we report a DNA vaccine based on the expression of the SVCV glycoprotein (G) which, when injected in the muscle even at a single low dose of 0.1 µg DNA/g of fish, confers up to 100% protection against a subsequent bath challenge with SVCV. Importantly, to best validate vaccine efficacy, we also optimized a reliable bath challenge model closely mimicking a natural infection, based on a prolonged exposure of carp to SVCV at 15°C. Using this optimized bath challenge, we showed a strong age-dependent susceptibility of carp to SVCV, with high susceptibility at young age (3 months) and a full resistance at 9 months. We visualized local expression of the G protein and associated early inflammatory response by immunohistochemistry and described changes in the gene expression of pro-inflammatory cytokines, chemokines, and antiviral genes in the muscle of vaccinated fish. Adaptive immune responses were investigated by analyzing neutralizing titers against SVCV in the serum of vaccinated fish and the in vitro proliferation capacity of peripheral SVCV-specific T cells. We show significantly higher serum neutralizing titers and the presence of SVCV-specific T cells in the blood of vaccinated fish, which proliferated upon stimulation with SVCV. Altogether, this is the first study reporting on a protective DNA vaccine against SVCV in carp and the first to provide a detailed characterization of local innate as well as systemic adaptive immune responses elicited upon DNA vaccination that suggest a role not only of B cells but also of T cells in the protection conferred by the SVCV-G DNA vaccine.

18.
Dev Comp Immunol ; 75: 48-62, 2017 10.
Artigo em Inglês | MEDLINE | ID: mdl-28257855

RESUMO

Accelerated by the introduction of Next-Generation Sequencing (NGS), a number of genomes of cyprinid fish species have been drafted, leading to a highly valuable collective resource of comparative genome information on cyprinids (Cyprinidae). In addition, NGS-based transcriptome analyses of different developmental stages, organs, or cell types, increasingly contribute to the understanding of complex physiological processes, including immune responses. Cyprinids are a highly interesting family because they comprise one of the most-diversified families of teleosts and because of their variation in ploidy level, with diploid, triploid, tetraploid, hexaploid and sometimes even octoploid species. The wealth of data obtained from NGS technologies provides both challenges and opportunities for immunological research, which will be discussed here. Correct interpretation of ploidy effects on immune responses requires knowledge of the degree of functional divergence between duplicated genes, which can differ even between closely-related cyprinid fish species. We summarize NGS-based progress in analysing immune responses and discuss the importance of respecting the presence of (multiple) duplicated gene sequences when performing transcriptome analyses for detailed understanding of complex physiological processes. Progressively, advances in NGS technology are providing workable methods to further elucidate the implications of gene duplication events and functional divergence of duplicates genes and proteins involved in immune responses in cyprinids. We conclude with discussing how future applications of NGS technologies and analysis methods could enhance immunological research and understanding.


Assuntos
Cyprinidae/genética , Cyprinidae/imunologia , Genótipo , Imunidade Inata/genética , Transcriptoma , Alergia e Imunologia , Animais , Evolução Biológica , Duplicação Gênica , Genoma , Sequenciamento de Nucleotídeos em Larga Escala , Fenótipo , Filogenia , Poliploidia , Especificidade da Espécie
19.
Dev Comp Immunol ; 64: 93-102, 2016 11.
Artigo em Inglês | MEDLINE | ID: mdl-26945622

RESUMO

Over the past decades, it has become evident that immune-modulation of fish with ß-glucans, using injection, dietary or even immersion routes of administration, has stimulating but presumed short-lived effects on both intestinal and systemic immunity and can increase protection against a subsequent pathogenic challenge. Although the exact effects can be variable depending on, among others, fish species and administration route, the immune-stimulating effects of ß-glucans on the immune system of fish appear to be universal. This review provides a condensed update of the most recent literature describing the effects of ß-glucans on the teleost fish immune system. We shortly discuss possible mechanisms influencing immune-stimulation by ß-glucans, including microbial composition of the gut, receptor recognition and downstream signalling. Of interest, in mammalian monocytes, ß-glucans are potent inducers of trained immunity. First, we screened the literature for indications of this phenomenon in fish. Criteria that we applied include indications for at least one out of three features considered characteristic of trained immunity; (i) providing protection against a secondary infection in a T- and B-lymphocyte independent manner, (ii) conferring increased resistance upon re-infection and, (iii) relying on key roles for innate immune cell types such as natural killer cells and macrophages. We conclude that several indications exist that support the notion that the innate immune system of teleost fish can be trained. Second, we screened the literature for indications of long-lived effects on innate immunity of fish after administering ß-glucans, a criterion which could help to identify key roles for macrophages on resistance to infection. We discuss whether ß-glucans, as well-known immune-stimulants, are able to train the immune system of fish and argue in favour of further studies designed to specifically investigate this phenomenon in fish.


Assuntos
Peixes/imunologia , Sistema Imunitário , Memória Imunológica , Intestinos/imunologia , Células Matadoras Naturais/imunologia , Macrófagos/imunologia , Microbiota/imunologia , beta-Glucanas/imunologia , Animais , Imunidade nas Mucosas , Imunização , Mamíferos , Receptores de Reconhecimento de Padrão/metabolismo , Transdução de Sinais
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