Polarity profiling of porous architectures: solvatochromic dye encapsulation in metal-organic frameworks.

Metal-organic frameworks (MOFs) have gathered significant interest due to their tunable porosity leading to diverse potential applications. In this study, we investigate the incorporation of the fluorosolvatochromic dye 2-butyl-5,6-dimethoxyisoindoline-1,3-dione ([double bond, length as m-dash]Phth) into various MOF structures as a means to assess the polarity of these porous materials. As a purely inorganic compound, zeolite Y was tested for comparison. The fluorosolvatochromic behavior of Phth, which manifests as changes in its emission spectra in response to solvent polarity, provides a sensitive probe for characterizing the local environment within the MOF pores. Through systematic variation of the MOF frameworks, we demonstrate the feasibility of using (fluoro-)solvatochromic dyes as probes for assessing the polarity gradients within MOF structures. Additionally, the fluorosolvatochromic response was studied as a function of loading amount. Our findings not only offer insights into the interplay between MOF architecture and guest molecule interactions but also present a promising approach for the rational design and classification of porous materials based on their polarity properties.

Probing the range of applicability of structure- and energy-adjusted QM/MM link bonds III: QM/MM MD simulations of solid-state systems at the example of layered carbon structures.

The previously introduced workflow to achieve an energetically and structurally optimized description of frontier bonds in quantum mechanical/molecular mechanics (QM/MM)-type applications was extended into the regime of computational material sciences at the example of a layered carbon model systems. Optimized QM/MM link bond parameters at HSEsol/6-311G(d,p) and self-consistent density functional tight binding (SCC-DFTB) were derived for graphitic systems, enabling detailed investigation of specific structure motifs occurring in graphene-derived structures v i a $$ via $$ quantum-chemical calculations. Exemplary molecular dynamics (MD) simulations in the isochoric-isothermic (NVT) ensemble were carried out to study the intercalation of lithium and the properties of the Stone-Thrower-Wales defect. The diffusivity of lithium as well as hydrogen and proton adsorption on a defective graphene surface served as additional example. The results of the QM/MM MD simulations provide detailed insight into the applicability of the employed link-bond strategy when studying intercalation and adsorption properties of graphitic materials.

Modelling bulk and surface characteristics of cubic CeO2, Gd2O3, and gadolinium-doped ceria using a partial charge framework.

The development and characterization of materials for solid oxide fuel cells (SOFC) is an important step towards sustainable energy technologies. This present study models cubic CeO2, Gd2O3, and gadolinium-doped ceria (GDC) using newly constructed interaction potentials based on a partial atom charge framework. The interaction model was validated by comparing the structural properties with experimental reference data, which were found to be in good agreement. Validation of the potential model was conducted considering the surface stability of CeO2 and Gd2O3. Additionally, the accuracy of the novel potential model was assessed by comparing the oxygen diffusion coefficient in GDCn (n = 4-15) and the associated activation energy. The results demonstrate that the novel potential model is capable of describing the oxygen diffusion in GDC. In addition, this study compares the vibrational properties of the bulk with density functional theory (DFT) calculations, using a harmonic frequency analysis that avoids the need for computationally expensive quantum mechanical molecular dynamics (QM MD) simulations. The potential is compatible with a reactive water model, thus providing a framework for the simulation of solid-liquid interfaces.

Towards hybrid quantum mechanical/molecular mechanical simulations of Li and Na intercalation in graphite - force field development and DFTB parametrisation.

In this work a previously established QM/MM simulation protocol for the treatment of solid-state interfaces was extended towards the treatment of layered bulk materials enabling for instance investigation of metal intercalation in graphitic carbon materials. In order to study the intercalation of Li in graphite, new density functional tight binding (DFTB) parameters for Li have been created. Molecular dynamics (MD) simulations at constant temperatures (273.15, 298.15 and 323.15 K) have been carried out to assess the performance of the presented DFTB MD simulation approach. The intercalation of variable lithium and sodium content was investigated via z-distribution functions and analysis of the diffusivity in the direction parallel to the graphene plane. Both the calculated diffusion coefficients and the activation energy in case of lithium are in good agreement with experimental data. The comparison of the QM/MM MD simulation results provide detailed insights into the structural and dynamical properties of intercalated metal ions.

Terminal methylene phosphonium ions: precursors for transient monosubstituted phosphinocarbenes.

Isolable singlet carbenes are among the most important tools in chemistry, but generally require the interaction of two substituents with the electron deficient carbon atom. We herein report a synthetic approach to monosubstituted phosphinocarbenes via deprotonation of hitherto unknown diprotic terminal methylene phosphonium ions. Two methylene phosphonium salts bearing bulky N-heterocyclic imine substituents at the phosphorus atom were isolated and fully characterized. Deprotonation studies indicate the formation of transient monosubstituted carbenes that undergo intermolecular cycloadditions or intramolecular Buchner ring expansion to afford a cycloheptatriene derivative. The reaction mechanism of the latter transformation was elucidated using DFT calculations, which reveal the ambiphilic nature of the phosphinocarbene enabling the insertion into the aromatic C-C bond. Additional computational studies on the role of substituent effects are presented.

Beyond the Status Quo: Density Functional Tight Binding and Neural Network Potentials as a Versatile Simulation Strategy to Characterize Host-Guest Interactions in Metal- and Covalent Organic Frameworks.

In recent years, research focused on synthesis, characterization, and application of metal-organic frameworks (MOFs) has attracted increased interest, from both an experimental as well as a theoretical perspective. Self-consistent charge density functional tight binding (SCC DFTB) in conjunction with a suitable constrained molecular dynamics (MD) simulation protocol provides a versatile and flexible platform for the study of pristine MOFs as well as guest@MOF systems. Although being a semi-empirical quantum mechanical method, SCC DFTB inherently accounts for polarization and many-body contributions, which may become a limiting factor in purely force field-based simulation studies. A number of examples such as CO2, indigo, and drug molecules embedded in various MOF hosts are discussed to highlight the capabilities of the presented simulation approach. Furthermore, a promising extension of the outlined simulation strategy toward the treatment of covalent organic frameworks utilizing state-of-the-art neural network potentials providing a description at DFT accuracy and force field cost is outlined.

Storage and diffusion of CO2 in covalent organic frameworks-A neural network-based molecular dynamics simulation approach.

As a consequence of the accelerated climate change, solutions to capture, store and potentially activate carbon dioxide received increased interest in recent years. Herein, it is demonstrated, that the neural network potential ANI-2x is able to describe nanoporous organic materials at approx. density functional theory accuracy and force field cost, using the example of the recently published two- and three-dimensional covalent organic frameworks HEX-COF1 and 3D-HNU5 and their interaction with CO2 guest molecules. Along with the investigation of the diffusion behaviour, a wide range of properties of interest is analyzed, such as the structure, pore size distribution and host-guest distribution functions. The workflow developed herein facilitates the estimation of the maximum CO2 adsorption capacity and is easily generalizable to other systems. Additionally, this work illustrates, that minimum distance distribution functions can be a highly useful tool in understanding the nature of interactions in host-gas systems at the atomic level.

Structural Properties of Metal-Organic Frameworks at Elevated Thermal Conditions via a Combined Density Functional Tight Binding Molecular Dynamics (DFTB MD) Approach.

The performance of different density functional tight binding (DFTB) methods for the description of six increasingly complex metal-organic framework (MOF) compounds have been assessed. In particular the self-consistent charge density functional tight binding (SCC DFTB) approach utilizing the 3ob and matsci parameter sets have been considered for a set of four Zn-based and two Al-based MOF systems. Moreover, the extended tight binding for geometries, frequencies, and noncovalent interactions (GFN2-xTB) approach has been considered as well. In addition to the application of energy minimizations of the respective unit cells, molecular dynamics (MD) simulations at constant temperature and pressure conditions (298.15 K, 1.013 bar) have been carried out to assess the performance of the different DFTB methods at nonzero thermal conditions. In order to obtain the XRD patterns from the MD simulations, a flexible workflow to obtain time-averaged XRD patterns from (in this study 5000) individual snapshots taken at regular intervals over the simulation trajectory has been applied. In addition, the comparison of pair-distribution functions (PDFs) directly accessible from the simulation data shows very good agreement with experimental reference data obtained via measurements employing synchrotron radiation in case of MOF-5. The comparison of the lattice constants and the associated X-ray diffraction (XRD) patterns with the experimental reference data demonstrate, that the SCC DFTB approach provides a highly efficient and accurate description of the target systems.

First ternary tungsten tellurate(IV) WTe2O7 with unique crystal structure type.

At multianvil high-pressure/high-temperature conditions of 10 GPa and 1273 K, the first ternary tungsten tellurate WTe2O7 is formed, starting from a stoichiometric mixture of WO3 and TeO2. The compound crystallizes triclinic in a hitherto unknown crystal structure type with the space group P1̄; (no. 2), and was refined from single-crystal X-ray diffractometer data: a = 538.3(1), b = 687.5(1), c = 802.3(1) pm, α = 72.4(1)°, ß = 85.7(1)°, γ = 68.1(1)°, wR2 = 0.0323, GooF = 1.048, 3157 F2 values, and 106 variables. The main motifs of the crystal structure are pairs of edge-linked [WO6]6- octahedra and fourfold oxygen-coordinated Te4+ atoms. The oxidation state of W6+ and Te4+ was further verified by measuring the characteristic binding energy values for the W 4f and the Te 3d core levels via X-ray photoelectron spectroscopy (XPS). In addition, DFT calculations of the structure, the associated electron localisation functions (ELF) and vibrational spectra have been carried out. The theoretical data clearly demonstrates the impact of the residual electron density located at the Te4+ ions, which can be directly interpreted as the presence of lone electron pairs within the solid structure.

Structural, dynamical, and photochemical properties of ortho-tetrafluoroazobenzene inside a flexible MOF under visible light irradiation.

Considering porous materials as host matrices is an elegant way to enable photoswitching of non-covalently attached organic dyes even in the solid state. By focusing on the resulting optical properties as a function of loading degree and synthesis procedure, the occurring host-guest and guest-guest interactions can be determined and further exploited. In the course of this study, the photochromic behavior of ortho-tetrafluoroazobenzene (tF-AZB) inside flexible DMOF-1 was investigated from these points of view. It was found that depending on the loading degree and temperature, tF-AZB shows varying E/Z ratios and switching efficiency. For systems with low loading, reversible visible light induced isomerization was observed over ten switching cycles: Upon violet light exposure, formation of 100% E isomer was generated, while green light irradiation resulted in ∼60% Z-tF-AZB. Complementary molecular dynamics simulations at DFTB (density functional tight binding)-level revealed changing binding sites for Z-tF-AZB inside DMOF-1. For the E isomer, only low oscillations have been found, which in turn display a rare T-stacking interaction. Although the interaction strengths of the E and Z isomers with DMOF-1 are in the same range, the different mobility of both isomers due to varying binding sites explains the preference of the E isomer even upon green light exposure.