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1.
ISME Commun ; 4(1): ycae028, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-38500704

RESUMO

While it is acknowledged that alpine soil bacterial communities are primarily driven by season and elevation, there is no consensus on the factors influencing fungi and protists. Here we used a holistic approach of the microbiome to investigate the seasonal dynamics in alpine grasslands, focusing on soil food web interactions. We collected 158 soil samples along elevation transects from three mountains in the Alps, in spring during snowmelt and in the following summer. Using metatranscriptomics, we simultaneously assessed prokaryotic and eukaryotic communities, further classified into trophic guilds. Our findings reveal that the consumers' pressure increases from spring to summer, leading to more diverse and evenly distributed prey communities. Consequently, consumers effectively maintain the diverse soil bacterial and fungal communities essential for ecosystem functioning. Our research highlights the significance of biotic interactions in understanding the distribution and dynamics of alpine microbial communities.

2.
Nat Commun ; 15(1): 1921, 2024 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-38429327

RESUMO

Rising temperatures are leading to increased prevalence of warm-affinity species in ecosystems, known as thermophilisation. However, factors influencing variation in thermophilisation rates among taxa and ecosystems, particularly freshwater communities with high diversity and high population decline, remain unclear. We analysed compositional change over time in 7123 freshwater and 6201 terrestrial, mostly temperate communities from multiple taxonomic groups. Overall, temperature change was positively linked to thermophilisation in both realms. Extirpated species had lower thermal affinities in terrestrial communities but higher affinities in freshwater communities compared to those persisting over time. Temperature change's impact on thermophilisation varied with community body size, thermal niche breadth, species richness and baseline temperature; these interactive effects were idiosyncratic in the direction and magnitude of their impacts on thermophilisation, both across realms and taxonomic groups. While our findings emphasise the challenges in predicting the consequences of temperature change across communities, conservation strategies should consider these variable responses when attempting to mitigate climate-induced biodiversity loss.


Assuntos
Biodiversidade , Ecossistema , Animais , Tamanho Corporal , Clima , Água Doce
3.
FEMS Microbiol Ecol ; 99(12)2023 11 13.
Artigo em Inglês | MEDLINE | ID: mdl-37951295

RESUMO

Climate warming and summer droughts alter soil microbial activity, affecting greenhouse gas (GHG) emissions in Arctic and alpine regions. However, the long-term effects of warming, and implications for future microbial resilience, are poorly understood. Using one alpine and three Arctic soils subjected to in situ long-term experimental warming, we simulated drought in laboratory incubations to test how microbial functional-gene abundance affects fluxes in three GHGs: carbon dioxide, methane, and nitrous oxide. We found that responses of functional gene abundances to drought and warming are strongly associated with vegetation type and soil carbon. Our sites ranged from a wet, forb dominated, soil carbon-rich systems to a drier, soil carbon-poor alpine site. Resilience of functional gene abundances, and in turn methane and carbon dioxide fluxes, was lower in the wetter, carbon-rich systems. However, we did not detect an effect of drought or warming on nitrous oxide fluxes. All gene-GHG relationships were modified by vegetation type, with stronger effects being observed in wetter, forb-rich soils. These results suggest that impacts of warming and drought on GHG emissions are linked to a complex set of microbial gene abundances and may be habitat-specific.


Assuntos
Gases de Efeito Estufa , Secas , Dióxido de Carbono/análise , Óxido Nitroso/análise , Solo , Metano/análise , Genes Microbianos
4.
Ecol Lett ; 26(2): 203-218, 2023 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-36560926

RESUMO

Human impacts such as habitat loss, climate change and biological invasions are radically altering biodiversity, with greater effects projected into the future. Evidence suggests human impacts may differ substantially between terrestrial and freshwater ecosystems, but the reasons for these differences are poorly understood. We propose an integrative approach to explain these differences by linking impacts to four fundamental processes that structure communities: dispersal, speciation, species-level selection and ecological drift. Our goal is to provide process-based insights into why human impacts, and responses to impacts, may differ across ecosystem types using a mechanistic, eco-evolutionary comparative framework. To enable these insights, we review and synthesise (i) how the four processes influence diversity and dynamics in terrestrial versus freshwater communities, specifically whether the relative importance of each process differs among ecosystems, and (ii) the pathways by which human impacts can produce divergent responses across ecosystems, due to differences in the strength of processes among ecosystems we identify. Finally, we highlight research gaps and next steps, and discuss how this approach can provide new insights for conservation. By focusing on the processes that shape diversity in communities, we aim to mechanistically link human impacts to ongoing and future changes in ecosystems.


Assuntos
Efeitos Antropogênicos , Ecossistema , Humanos , Biodiversidade , Água Doce , Evolução Biológica , Mudança Climática
5.
Ecol Evol ; 12(10): e9396, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-36262264

RESUMO

A growing body of work examines the direct and indirect effects of climate change on ecosystems, typically by using manipulative experiments at a single site or performing meta-analyses across many independent experiments. However, results from single-site studies tend to have limited generality. Although meta-analytic approaches can help overcome this by exploring trends across sites, the inherent limitations in combining disparate datasets from independent approaches remain a major challenge. In this paper, we present a globally distributed experimental network that can be used to disentangle the direct and indirect effects of climate change. We discuss how natural gradients, experimental approaches, and statistical techniques can be combined to best inform predictions about responses to climate change, and we present a globally distributed experiment that utilizes natural environmental gradients to better understand long-term community and ecosystem responses to environmental change. The warming and (species) removal in mountains (WaRM) network employs experimental warming and plant species removals at high- and low-elevation sites in a factorial design to examine the combined and relative effects of climatic warming and the loss of dominant species on community structure and ecosystem function, both above- and belowground. The experimental design of the network allows for increasingly common statistical approaches to further elucidate the direct and indirect effects of warming. We argue that combining ecological observations and experiments along gradients is a powerful approach to make stronger predictions of how ecosystems will function in a warming world as species are lost, or gained, in local communities.

6.
Nat Commun ; 12(1): 3442, 2021 06 11.
Artigo em Inglês | MEDLINE | ID: mdl-34117253

RESUMO

Rapid climate warming is altering Arctic and alpine tundra ecosystem structure and function, including shifts in plant phenology. While the advancement of green up and flowering are well-documented, it remains unclear whether all phenophases, particularly those later in the season, will shift in unison or respond divergently to warming. Here, we present the largest synthesis to our knowledge of experimental warming effects on tundra plant phenology from the International Tundra Experiment. We examine the effect of warming on a suite of season-wide plant phenophases. Results challenge the expectation that all phenophases will advance in unison to warming. Instead, we find that experimental warming caused: (1) larger phenological shifts in reproductive versus vegetative phenophases and (2) advanced reproductive phenophases and green up but delayed leaf senescence which translated to a lengthening of the growing season by approximately 3%. Patterns were consistent across sites, plant species and over time. The advancement of reproductive seasons and lengthening of growing seasons may have significant consequences for trophic interactions and ecosystem function across the tundra.


Assuntos
Fenômenos Fisiológicos Vegetais , Plantas , Reprodução/fisiologia , Tundra , Regiões Árticas , Clima , Ecossistema , Flores , Modelos Biológicos , Fenótipo , Plantas/genética , Estações do Ano , Análise Espaço-Temporal , Temperatura
7.
Biol Rev Camb Philos Soc ; 96(5): 1816-1835, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-33908168

RESUMO

Mountain areas are biodiversity hotspots and provide a multitude of ecosystem services of irreplaceable socio-economic value. In the European Alps, air temperature has increased at a rate of about 0.36°C decade-1 since 1970, leading to glacier retreat and significant snowpack reduction. Due to these rapid environmental changes, this mountainous region is undergoing marked changes in spring phenology and elevational distribution of animals, plants and fungi. Long-term monitoring in the European Alps offers an excellent natural laboratory to synthetize climate-related changes in spring phenology and elevational distribution for a large array of taxonomic groups. This review assesses the climatic changes that have occurred across the European Alps during recent decades, spring phenological changes and upslope shifts of plants, animals and fungi from evidence in published papers and previously unpublished data. Our review provides evidence that spring phenology has been shifting earlier during the past four decades and distribution ranges show an upwards trend for most of the taxonomic groups for which there are sufficient data. The first observed activity of reptiles and terrestrial insects (e.g. butterflies) in spring has shifted significantly earlier, at an average rate of -5.7 and -6.0 days decade-1 , respectively. By contrast, the first observed spring activity of semi-aquatic insects (e.g. dragonflies and damselflies) and amphibians, as well as the singing activity or laying dates of resident birds, show smaller non-significant trends ranging from -1.0 to +1.3 days decade-1 . Leaf-out and flowering of woody and herbaceous plants showed intermediate trends with mean values of -2.4 and -2.8 days decade-1 , respectively. Regarding species distribution, plants, animals and fungi (N = 2133 species) shifted the elevation of maximum abundance (optimum elevation) upslope at a similar pace (on average between +18 and +25 m decade-1 ) but with substantial differences among taxa. For example, the optimum elevation shifted upward by +36.2 m decade-1 for terrestrial insects and +32.7 m decade-1 for woody plants, whereas it was estimated to range between -1.0 and +11 m decade-1 for semi-aquatic insects, ferns, birds and wood-decaying fungi. The upper range limit (leading edge) of most species also shifted upslope with a rate clearly higher for animals (from +47 to +91 m decade-1 ) than for plants (from +17 to +40 m decade-1 ), except for semi-aquatic insects (-4.7 m decade-1 ). Although regional land-use changes could partly explain some trends, the consistent upward shift found in almost all taxa all over the Alps is likely reflecting the strong warming and the receding of snow cover that has taken place across the European Alps over recent decades. However, with the possible exception of terrestrial insects, the upward shift of organisms seems currently too slow to track the pace of isotherm shifts induced by climate warming, estimated at about +62 to +71 m decade-1 since 1970. In the light of these results, species interactions are likely to change over multiple trophic levels through phenological and spatial mismatches. This nascent research field deserves greater attention to allow us to anticipate structural and functional changes better at the ecosystem level.


Assuntos
Borboletas , Odonatos , Animais , Mudança Climática , Ecossistema , Fungos , Plantas , Estações do Ano , Temperatura
8.
Sci Total Environ ; 725: 138380, 2020 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-32298886

RESUMO

Snow accumulation and melt have multiple impacts on Land Surface Phenology (LSP) and greenness in Alpine grasslands. Our understanding of these impacts and their interactions with meteorological factors are still limited. In this study, we investigate this topic by analyzing LSP dynamics together with potential drivers, using satellite imagery and other data sources. LSP (start and end of season) and greenness metrics were extracted from time series of vegetation and leaf area index. As explanatory variables we used snow accumulation, snow cover melt date and meteorological factors. We tested for inter-annual co-variation of LSP and greenness metrics with seasonal snow and meteorological metrics across elevations and for four sub-regions of natural grasslands in the Swiss Alps over the period 2003-2014. We found strong positive correlations of snow cover melt date and snow accumulation with the start of season, especially at higher elevation. Autumn temperature was found to be important at the end of season below 2000 m above sea level (m asl), while autumn precipitation was relevant above 2000 m asl, indicating climatic growth limiting factors to be elevation dependent. The effects of snow and meteorological factors on greenness revealed that this metric tends to be influenced by temperatures at high elevations, and by snow melt date at low elevations. Given the high sensitivity of alpine grassland ecosystems, these results suggest that alpine grasslands may be particularly affected by future changes in seasonal snow, to varying degree depending on elevation.

9.
Front Microbiol ; 10: 1080, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31156590

RESUMO

While vegetation has intensively been surveyed on mountain summits, limited knowledge exists about the diversity and community structure of soil biota. Here, we study how climatic variables, vegetation, parent material, soil properties, and slope aspect affect the soil microbiome on 10 GLORIA (Global Observation Research Initiative in Alpine environments) mountain summits ranging from the lower alpine to the nival zone in Switzerland. At these summits we sampled soils from all four aspects and examined how the bacterial and fungal communities vary by using Illumina MiSeq sequencing. We found that mountain summit soils contain highly diverse microbial communities with a total of 10,406 bacterial and 6,291 fungal taxa. Bacterial α-diversity increased with increasing soil pH and decreased with increasing elevation, whereas fungal α-diversity did not change significantly. Soil pH was the strongest predictor for microbial ß-diversity. Bacterial and fungal community structures exhibited a significant positive relationship with plant communities, indicating that summits with a more distinct plant composition also revealed more distinct microbial communities. The influence of elevation was stronger than aspect on the soil microbiome. Several microbial taxa responded to elevation and soil pH. Chloroflexi and Mucoromycota were significantly more abundant on summits at higher elevations, whereas the relative abundance of Basidiomycota and Agaricomycetes decreased with elevation. Most bacterial OTUs belonging to the phylum Acidobacteria were indicators for siliceous parent material and several OTUs belonging to the phylum Planctomycetes were associated with calcareous soils. The trends for fungi were less clear. Indicator OTUs belonging to the genera Mortierella and Naganishia showed a mixed response to parent material, demonstrating their ubiquitous and opportunistic behaviour in soils. Overall, fungal communities responded weakly to abiotic and biotic factors. In contrast, bacterial communities were strongly influenced by environmental changes suggesting they will be strongly affected by future climate change and associated temperature increase and an upward migration of vegetation. Our results provide the first insights into the soil microbiome of mountain summits in the European Alps that are shaped as a result of highly variable local environmental conditions and may help to predict responses of the soil biota to global climate change.

11.
Nat Ecol Evol ; 3(1): 45-52, 2019 01.
Artigo em Inglês | MEDLINE | ID: mdl-30532048

RESUMO

Advancing phenology is one of the most visible effects of climate change on plant communities, and has been especially pronounced in temperature-limited tundra ecosystems. However, phenological responses have been shown to differ greatly between species, with some species shifting phenology more than others. We analysed a database of 42,689 tundra plant phenological observations to show that warmer temperatures are leading to a contraction of community-level flowering seasons in tundra ecosystems due to a greater advancement in the flowering times of late-flowering species than early-flowering species. Shorter flowering seasons with a changing climate have the potential to alter trophic interactions in tundra ecosystems. Interestingly, these findings differ from those of warmer ecosystems, where early-flowering species have been found to be more sensitive to temperature change, suggesting that community-level phenological responses to warming can vary greatly between biomes.


Assuntos
Mudança Climática , Flores/crescimento & desenvolvimento , Estações do Ano , Temperatura , Desenvolvimento Vegetal , Tundra
12.
Ecol Evol ; 8(16): 7921-7935, 2018 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-30250673

RESUMO

Global change is modifying species communities from local to landscape scales, with alterations in the abiotic and biotic determinants of geographic range limits causing species range shifts along both latitudinal and elevational gradients. An important but often overlooked component of global change is the effect of anthropogenic disturbance, and how it interacts with the effects of climate to affect both species and communities, as well as interspecies interactions, such as facilitation and competition. We examined the effects of frequent human trampling disturbances on alpine plant communities in Switzerland, focusing on the elevational range of the widely distributed cushion plant Silene acaulis and the interactions of this facilitator species with other plants. Examining size distributions and densities, we found that disturbance appears to favor individual Silene growth at middle elevations. However, it has negative effects at the population level, as evidenced by a reduction in population density and reproductive indices. Disturbance synergistically interacts with the effects of elevation to reduce species richness at low and high elevations, an effect not mitigated by Silene. In fact, we find predominantly competitive interactions, both by Silene on its hosted and neighboring species and by neighboring (but not hosted) species on Silene. Our results indicate that disturbance can be beneficial for Silene individual performance, potentially through changes in its neighboring species community. However, possible reduced recruitment in disturbed areas could eventually lead to population declines. While other studies have shown that light to moderate disturbances can maintain high species diversity, our results emphasize that heavier disturbance reduces species richness, diversity, as well as percent cover, and adversely affects cushion plants and that these effects are not substantially reduced by plant-plant interactions. Heavily disturbed alpine systems could therefore be at greater risk for upward encroachment of lower elevation species in a warming world.

13.
Nature ; 562(7725): 57-62, 2018 10.
Artigo em Inglês | MEDLINE | ID: mdl-30258229

RESUMO

The tundra is warming more rapidly than any other biome on Earth, and the potential ramifications are far-reaching because of global feedback effects between vegetation and climate. A better understanding of how environmental factors shape plant structure and function is crucial for predicting the consequences of environmental change for ecosystem functioning. Here we explore the biome-wide relationships between temperature, moisture and seven key plant functional traits both across space and over three decades of warming at 117 tundra locations. Spatial temperature-trait relationships were generally strong but soil moisture had a marked influence on the strength and direction of these relationships, highlighting the potentially important influence of changes in water availability on future trait shifts in tundra plant communities. Community height increased with warming across all sites over the past three decades, but other traits lagged far behind predicted rates of change. Our findings highlight the challenge of using space-for-time substitution to predict the functional consequences of future warming and suggest that functions that are tied closely to plant height will experience the most rapid change. They also reveal the strength with which environmental factors shape biotic communities at the coldest extremes of the planet and will help to improve projections of functional changes in tundra ecosystems with climate warming.


Assuntos
Aquecimento Global , Fenômenos Fisiológicos Vegetais , Plantas/anatomia & histologia , Tundra , Biometria , Mapeamento Geográfico , Umidade , Fenótipo , Solo/química , Análise Espaço-Temporal , Temperatura , Água/análise
14.
Sci Total Environ ; 642: 1172-1183, 2018 Nov 15.
Artigo em Inglês | MEDLINE | ID: mdl-30045499

RESUMO

Plant growth responses to environmental changes may be linked to xylem anatomical adjustments. The study of such links is essential for improving our understanding of plant functioning under global change. We investigated the xylem anatomy and above-ground growth of the dwarf shrub Vaccinium myrtillus in the understorey of Larix decidua and Pinus uncinata at the Swiss treeline after 9 years of free-air CO2 enrichment (+200 ppm) and 6 years of soil warming (+4 °C). We aimed to determine the responses of xylem anatomical traits and growth to these treatments, and to analyse xylem anatomy-growth relationships. We quantified anatomical characteristics of vessels and ray parenchyma and measured xylem ring width (RW), above-ground biomass and shoot elongation as growth parameters. Our results showed strong positive correlations between theoretical hydraulic conductivity (Kh) and shoot increment length or total biomass across all treatments. However, while soil warming stimulated shoot elongation and RW, it reduced vessel size (Dh) by 14%. Elevated CO2 had smaller effects than soil warming: it increased Dh (5%) in the last experimental years and only influenced growth by increasing basal stem size. The abundance of ray parenchyma, representing storage capacity, did not change under any treatment. Our results demonstrate a link between growth and stem Kh in V. myrtillus, but its growth responses to warming were not explained by the observed xylem anatomical changes. Smaller Dh under warming may increase resistance to freezing events frequently occurring at treeline and suggests that hydraulic efficiency is not limiting for V. myrtillus growing on moist soils at treeline. Our findings suggest that future higher atmospheric CO2 concentrations will have smaller effects on V. myrtillus growth and functioning than rising temperatures at high elevations; further, growth stimulation of this species under future warmer conditions may not be synchronized with xylem adjustments favouring hydraulic efficiency.


Assuntos
Dióxido de Carbono/metabolismo , Temperatura , Vaccinium myrtillus/fisiologia , Xilema/fisiologia , Monitoramento Ambiental , Larix , Solo/química
15.
Int J Biometeorol ; 62(9): 1755-1762, 2018 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-30003338

RESUMO

The length of the snow-free season is a key factor regulating plant phenology and shaping plant community composition in cold regions. While global warming has significantly advanced the time of snowmelt and the growth period at all elevations in the Swiss Alps, it remains unclear if it has altered the likelihood of frost risk for alpine plants. Here, we analyzed the influence of the snowmelt timing on the risk of frost exposure for subalpine and alpine plants shortly after snowmelt, i.e., during their most vulnerable period to frost at the beginning of their growth period. Furthermore, we tested whether recent climate warming has changed the risk of exposure of plants to frost after snowmelt. We analyzed snow and air temperature data in the Swiss Alps using six weather stations covering the period 1970-2016 and 77 weather stations covering the period 1998-2016, spanning elevations from 1418 to 2950 m asl. When analyzed across all years within each station, our results showed strong negative relationships between the time of snowmelt and the frequency and intensity of frost during the most vulnerable period to frost for subalpine and alpine plants, indicating a higher frost risk damage for plants during years with earlier snowmelt. However, over the last 46 years, the time of snowmelt and the last spring frost date have advanced at similar rates, so that the frequency and intensity of frost during the vulnerable period for plants remained unchanged.


Assuntos
Mudança Climática , Plantas , Neve , Temperatura , Risco , Estações do Ano , Suíça
16.
Sci Rep ; 8(1): 10894, 2018 Jul 18.
Artigo em Inglês | MEDLINE | ID: mdl-30022032

RESUMO

Treeline responses to climate change ultimately depend on successful seedling recruitment, which requires dispersal of viable seeds and establishment of individual propagules in novel environments. In this study, we evaluated the effects of several abiotic and biotic drivers of early tree seedling recruitment across an alpine treeline ecotone. In two consecutive years, we sowed seeds of low- and high-elevation provenances of Larix decidua (European larch) and Picea abies (Norway spruce) below, at, and above the current treeline into intact vegetation and into open microsites with artificially removed surface vegetation, as well as into plots protected from seed predators and herbivores. Seedling emergence and early establishment in treatment and in control plots were monitored over two years. Tree seedling emergence occurred at and several hundred metres above the current treeline when viable seeds and suitable microsites for germination were available. However, dense vegetation cover at lower elevations and winter mortality at higher elevations particularly limited early recruitment. Post-dispersal predation, species, and provenance also affected emergence and early establishment. This study demonstrates the importance of understanding multiple abiotic and biotic drivers of early seedling recruitment that should be incorporated into predictions of treeline dynamics under climate change.


Assuntos
Biota , Mudança Climática , Picea/fisiologia , Pinus/fisiologia , Plântula/fisiologia , Estresse Fisiológico , Árvores/fisiologia , Ecossistema , Germinação , Noruega , Estações do Ano
17.
Nature ; 556(7700): 231-234, 2018 04.
Artigo em Inglês | MEDLINE | ID: mdl-29618821

RESUMO

Globally accelerating trends in societal development and human environmental impacts since the mid-twentieth century 1-7 are known as the Great Acceleration and have been discussed as a key indicator of the onset of the Anthropocene epoch 6 . While reports on ecological responses (for example, changes in species range or local extinctions) to the Great Acceleration are multiplying 8, 9 , it is unknown whether such biotic responses are undergoing a similar acceleration over time. This knowledge gap stems from the limited availability of time series data on biodiversity changes across large temporal and geographical extents. Here we use a dataset of repeated plant surveys from 302 mountain summits across Europe, spanning 145 years of observation, to assess the temporal trajectory of mountain biodiversity changes as a globally coherent imprint of the Anthropocene. We find a continent-wide acceleration in the rate of increase in plant species richness, with five times as much species enrichment between 2007 and 2016 as fifty years ago, between 1957 and 1966. This acceleration is strikingly synchronized with accelerated global warming and is not linked to alternative global change drivers. The accelerating increases in species richness on mountain summits across this broad spatial extent demonstrate that acceleration in climate-induced biotic change is occurring even in remote places on Earth, with potentially far-ranging consequences not only for biodiversity, but also for ecosystem functioning and services.


Assuntos
Altitude , Biodiversidade , Mapeamento Geográfico , Aquecimento Global/estatística & dados numéricos , Plantas/classificação , Europa (Continente) , História do Século XX , História do Século XXI , Temperatura
18.
PLoS One ; 13(4): e0196653, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-29698464

RESUMO

Enhanced shrub growth and expansion are widespread responses to climate warming in many arctic and alpine ecosystems. Warmer temperatures and shrub expansion could cause major changes in plant community structure, affecting both species composition and diversity. To improve our understanding of the ongoing changes in plant communities in alpine tundra, we studied interrelations among climate, shrub growth, shrub cover and plant diversity, using an elevation gradient as a proxy for climate conditions. Specifically, we analyzed growth of bilberry (Vaccinium myrtillus L.) and its associated plant communities along an elevation gradient of ca. 600 vertical meters in the eastern European Alps. We assessed the ramet age, ring width and shoot length of V. myrtillus, and the shrub cover and plant diversity of the community. At higher elevation, ramets of V. myrtillus were younger, with shorter shoots and narrower growth rings. Shoot length was positively related to shrub cover, but shrub cover did not show a direct relationship with elevation. A greater shrub cover had a negative effect on species richness, also affecting species composition (beta-diversity), but these variables were not influenced by elevation. Our findings suggest that changes in plant diversity are driven directly by shrub cover and only indirectly by climate, here represented by changes in elevation.


Assuntos
Ecossistema , Vaccinium myrtillus/crescimento & desenvolvimento , Altitude , Clima , Brotos de Planta/crescimento & desenvolvimento , Brotos de Planta/fisiologia , Rhododendron/crescimento & desenvolvimento
19.
Mol Ecol Resour ; 18(2): 229-239, 2018 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-29058814

RESUMO

We describe the performance of a new metabarcoding approach to investigate the environmental diversity of a prominent group of widespread unicellular organisms, the Cercozoa. Cercozoa is an immensely large group of protists, and although it may dominate in soil and aquatic ecosystems, its environmental diversity remains undersampled. We designed PCR primers targeting the hypervariable region V4 of the small subunit ribosomal RNA (SSU or 18S) gene, which is the recommended barcode marker for Cercozoa. The length of the amplified fragment (c. 350 bp) is suitable for Illumina MiSeq, the most cost-effective platform for molecular environmental surveys. We provide barcoded primers, an economical alternative to multiple libraries for multiplex sequencing of over a hundred samples. In silico, our primers matched 68% of the cercozoan sequences of the reference database and performed better than previously proposed new-generation sequencing primers. In mountain grassland soils and in biological soil crusts from a variety of climatic regions, we were able to detect cercozoan sequences encompassing nearly the whole range of the phylum. We obtained 901 operational taxonomic units (OTUs) at 97% similarity threshold from 26 samples, with c. 50,000 sequences per site, and only 8% of noncercozoan sequences. We could report a further increase in the diversity of Cercozoa, as only 43% of the OTUs were 97%-100% similar to any known sequence. Our study thus provides an advanced tool for cercozoan metabarcoding and to investigate their diversity and distribution in the environment.


Assuntos
Cercozoários/classificação , Cercozoários/genética , Código de Barras de DNA Taxonômico/métodos , Primers do DNA/genética , Variação Genética , DNA de Protozoário/química , DNA de Protozoário/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Microbiologia Ambiental , Filogenia , RNA Ribossômico 18S/genética , Análise de Sequência de DNA
20.
New Phytol ; 215(2): 766-778, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28543616

RESUMO

Increased CO2 emissions and global warming may alter the composition of fungal communities through the removal of temperature limitation in the plant-soil system, faster nitrogen (N) cycling and changes in the carbon (C) allocation of host plants to the rhizosphere. At a Swiss treeline featuring Larix decidua and Pinus uncinata, the effects of multiple years of CO2 enrichment and experimental soil warming on the fungal community composition in the organic horizons were analysed using 454-pyrosequencing of ITS2 amplicons. Sporocarp production and colonization of ectomycorrhizal root tips were investigated in parallel. Fungal community composition was significantly altered by soil warming, whereas CO2 enrichment had little effect. Tree species influenced fungal community composition and the magnitude of the warming responses. The abundance of ectomycorrhizal fungal taxa was positively correlated with N availability, and ectomycorrhizal taxa specialized for conditions of high N availability proliferated with warming, corresponding to considerable increases in inorganic N in warmed soils. Traits related to N utilization are important in determining the responses of ectomycorrhizal fungi to warming in N-poor cold ecosystems. Shifts in the overall fungal community composition in response to higher temperatures may alter fungal-driven processes with potential feedbacks on ecosystem N cycling and C storage at the alpine treeline.


Assuntos
Fungos/fisiologia , Microbiologia do Solo , Altitude , Disponibilidade Biológica , Dióxido de Carbono , Fungos/genética , Larix , Micorrizas/fisiologia , Nitrogênio/farmacocinética , Pinus , Raízes de Plantas/microbiologia , Solo/química , Suíça , Temperatura
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